Wall clock time and date at job start Tue Mar 31 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99621 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.08996 * 109.55067 * 324.99819 * 14 13 11 16 16 C 1.53184 * 109.55210 * 85.18967 * 14 13 11 17 17 C 1.53079 * 109.23412 * 177.13139 * 16 14 13 18 18 O 1.42979 * 109.40585 * 302.09565 * 17 16 14 19 19 C 1.42546 * 114.11760 * 60.49175 * 18 17 16 20 20 C 1.53594 * 110.06905 * 178.27964 * 19 18 17 21 21 C 1.54346 * 106.48839 * 240.72927 * 20 19 18 22 22 C 1.54922 * 104.20386 * 23.57288 * 21 20 19 23 23 C 1.54007 * 109.79863 * 60.87611 * 19 18 17 24 24 C 1.52782 * 110.41537 * 299.87205 * 19 18 17 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.09007 * 109.50637 * 297.06079 * 16 14 13 32 32 H 1.08995 * 109.50736 * 57.20000 * 16 14 13 33 33 H 1.08999 * 109.48332 * 62.07349 * 17 16 14 34 34 H 1.09001 * 109.48360 * 182.11602 * 17 16 14 35 35 H 1.09000 * 110.05188 * 359.97438 * 20 19 18 36 36 H 1.08995 * 110.05521 * 121.47291 * 20 19 18 37 37 H 1.09001 * 110.48278 * 264.89456 * 21 20 19 38 38 H 1.08996 * 110.59755 * 142.31060 * 21 20 19 39 39 H 1.08995 * 110.74721 * 203.88333 * 22 21 20 40 40 H 1.08995 * 110.90698 * 80.59909 * 22 21 20 41 41 H 1.08999 * 110.49874 * 214.58937 * 23 19 18 42 42 H 1.08998 * 110.50374 * 337.26928 * 23 19 18 43 43 H 1.08995 * 109.45275 * 296.72929 * 24 19 18 44 44 H 1.09002 * 109.60077 * 176.53224 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 1 0.5217 -7.2955 0.5992 16 6 1.0724 -7.7929 -1.4259 17 6 0.3707 -9.1535 -1.4182 18 8 1.2273 -10.1263 -0.8147 19 6 1.5766 -9.8365 0.5365 20 6 2.4594 -10.9577 1.1047 21 6 1.6936 -11.5521 2.3058 22 6 0.2112 -11.2026 2.0221 23 6 0.3054 -9.7847 1.4044 24 6 2.3116 -8.4998 0.6221 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.4060 -7.0420 -1.8505 32 1 1.9807 -7.8551 -2.0250 33 1 -0.5557 -9.0815 -0.8485 34 1 0.1458 -9.4523 -2.4421 35 1 2.6217 -11.7254 0.3481 36 1 3.4147 -10.5500 1.4353 37 1 2.0235 -11.0888 3.2356 38 1 1.8290 -12.6327 2.3501 39 1 -0.3648 -11.1834 2.9472 40 1 -0.2249 -11.9050 1.3118 41 1 0.4081 -9.0333 2.1873 42 1 -0.5695 -9.5779 0.7880 43 1 3.2492 -8.5651 0.0702 44 1 2.5178 -8.2620 1.6657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408235124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:18 Heat of formation + Delta-G solvation = -113.187121 kcal Electronic energy + Delta-G solvation = -22538.596355 eV Core-core repulsion = 19261.446895 eV Total energy + Delta-G solvation = -3277.149461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75625 -38.98049 -36.39174 -35.06588 -33.44379 -31.74594 -30.88461 -30.59101 -29.02171 -26.38415 -25.32201 -23.95031 -22.24180 -21.37983 -20.50707 -19.74607 -19.11269 -17.08163 -16.69093 -16.26036 -15.85853 -15.43525 -15.38315 -14.92920 -14.46619 -14.44761 -14.28671 -13.59912 -13.33256 -13.26862 -13.01662 -12.32299 -12.17089 -11.99772 -11.85206 -11.58157 -11.45768 -11.29056 -11.15711 -11.12159 -10.97148 -10.91743 -10.81545 -10.59328 -10.32895 -9.96163 -9.71865 -9.64815 -9.14522 -8.95662 -8.78678 -8.32516 -5.96482 -4.00777 3.24476 3.32241 3.38850 3.41956 3.46777 3.57692 4.26072 4.29644 4.47204 4.60125 4.70376 4.73981 4.89849 4.99782 5.06960 5.19033 5.21921 5.29975 5.38270 5.38548 5.45500 5.52059 5.57545 5.60570 5.63632 5.68167 5.78301 5.83273 5.86462 5.99072 6.04160 6.07979 6.19135 6.23436 6.25343 6.75509 6.89682 7.14060 7.74459 7.86144 7.89896 8.06965 8.38694 8.78613 9.08102 9.62830 11.14483 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038430 B = 0.002953 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.418485 B = 9479.279977 C = 9576.067829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.740 5.740 14 C 0.144 3.856 15 H 0.087 0.913 16 C -0.167 4.167 17 C 0.060 3.940 18 O -0.371 6.371 19 C 0.120 3.880 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.147 4.147 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -24.367 1.927 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.393 5.393 14 C 0.039 3.961 15 H 0.105 0.895 16 C -0.206 4.206 17 C -0.017 4.017 18 O -0.290 6.290 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.193 4.193 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.172 -24.380 1.838 24.802 hybrid contribution 0.830 1.290 0.026 1.534 sum 5.001 -23.090 1.864 23.698 Atomic orbital electron populations 1.70013 1.06053 1.26453 1.50318 1.25032 0.94833 0.99249 0.95325 0.86536 0.80007 0.83835 0.77587 1.19751 1.21011 1.21015 1.21264 0.92960 0.91023 1.51219 0.92572 1.18897 0.93170 0.89396 0.98582 1.21873 1.00723 0.92005 1.02450 1.21582 0.88691 0.85685 0.74159 1.90660 1.14457 1.87633 1.48249 1.46281 1.09905 1.05310 1.77800 1.20869 0.96122 0.83212 0.95915 0.89469 1.22607 1.02147 0.97894 0.97912 1.22617 0.92780 0.87812 0.98443 1.87914 1.68072 1.47355 1.25676 1.21820 0.93849 0.93666 0.82631 1.22124 0.97851 0.97276 0.97542 1.22375 0.95292 1.00615 0.97831 1.22460 0.96478 0.96424 1.00517 1.23071 0.98425 0.98061 0.99784 1.22507 0.99449 0.94339 1.02196 0.93014 0.95861 0.95850 0.90280 0.90289 0.76992 0.90059 0.91018 0.92550 0.88652 0.90300 0.90690 0.91445 0.91412 0.91517 0.91279 0.90482 0.90523 0.90652 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.81 16 11 C 0.51 9.79 7.80 -10.98 -0.09 9.71 16 12 O -0.53 -12.53 15.65 5.55 0.09 -12.44 16 13 N -0.74 -10.40 5.09 -53.59 -0.27 -10.68 16 14 C 0.14 1.83 2.31 -67.71 -0.16 1.68 16 15 H 0.09 1.29 6.88 -51.93 -0.36 0.94 16 16 C -0.17 -2.05 5.71 -26.60 -0.15 -2.20 16 17 C 0.06 0.64 6.57 37.20 0.24 0.89 16 18 O -0.37 -4.15 10.16 -35.23 -0.36 -4.50 16 19 C 0.12 1.17 0.98 -89.90 -0.09 1.08 16 20 C -0.11 -0.89 6.27 -25.72 -0.16 -1.05 16 21 C -0.12 -0.88 6.84 -25.01 -0.17 -1.05 16 22 C -0.12 -0.97 6.91 -24.69 -0.17 -1.14 16 23 C -0.16 -1.48 4.92 -25.18 -0.12 -1.60 16 24 C -0.15 -1.45 4.01 -26.72 -0.11 -1.56 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.42 8.61 -40.82 -0.35 4.07 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.59 6.06 -51.93 -0.31 0.28 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 42 H 0.08 0.77 5.82 -51.93 -0.30 0.47 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -33.65 344.25 -8.86 -42.51 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.57 Total: 0.95 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.66 Total: -10.94 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.46 Total: -37.48 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.27 Total: -16.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.65 -8.86 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408235124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.676 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds