Wall clock time and date at job start Tue Mar 31 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48492 * 109.47003 * 269.99409 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99450 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99179 * 3 2 1 7 7 C 1.37880 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99438 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00266 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.08015 * 35.03076 * 14 13 11 16 16 C 1.54360 * 110.05737 * 273.54971 * 14 13 11 17 17 C 1.54923 * 104.31951 * 264.38235 * 16 14 13 18 18 C 1.54958 * 102.79030 * 322.17311 * 17 16 14 19 19 C 1.53873 * 110.11334 * 156.68735 * 14 13 11 20 20 C 1.52782 * 110.07097 * 238.36338 * 19 14 13 21 21 C 1.53165 * 109.18819 * 177.38560 * 20 19 14 22 22 O 1.42915 * 109.35867 * 303.07100 * 21 20 19 23 23 C 1.42902 * 114.17937 * 61.52827 * 22 21 20 24 24 C 1.52783 * 110.04192 * 359.78159 * 19 14 13 25 25 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46510 * 60.00257 * 9 7 2 27 27 H 1.08992 * 109.47554 * 300.00257 * 9 7 2 28 28 H 1.08996 * 109.46970 * 60.00571 * 10 9 7 29 29 H 1.08999 * 109.47652 * 300.00285 * 10 9 7 30 30 H 0.97004 * 120.00172 * 0.02562 * 13 11 10 31 31 H 1.09002 * 110.48535 * 145.63400 * 16 14 13 32 32 H 1.08998 * 110.48536 * 23.12703 * 16 14 13 33 33 H 1.08996 * 110.74725 * 80.50509 * 17 16 14 34 34 H 1.09006 * 110.74308 * 203.85095 * 17 16 14 35 35 H 1.09004 * 110.49875 * 156.30545 * 18 17 16 36 36 H 1.08999 * 110.50815 * 278.85788 * 18 17 16 37 37 H 1.09000 * 109.51619 * 297.29287 * 20 19 14 38 38 H 1.09002 * 109.51991 * 57.46804 * 20 19 14 39 39 H 1.09005 * 109.49193 * 183.10750 * 21 20 19 40 40 H 1.09000 * 109.49359 * 63.03597 * 21 20 19 41 41 H 1.09002 * 109.49089 * 178.49856 * 23 22 21 42 42 H 1.09001 * 109.50689 * 58.44187 * 23 22 21 43 43 H 1.08997 * 109.51882 * 302.50757 * 24 19 14 44 44 H 1.09002 * 109.51547 * 62.67534 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2789 -4.9671 -0.0010 13 7 2.1655 -6.1344 -0.0007 14 6 1.4331 -7.4031 -0.0019 15 1 0.5202 -7.3077 -0.5898 16 6 1.0902 -7.8178 1.4449 17 6 2.2300 -8.7873 1.8460 18 6 2.4857 -9.5764 0.5371 19 6 2.3179 -8.5244 -0.5743 20 6 1.6417 -9.1572 -1.7894 21 6 2.5671 -10.2245 -2.3815 22 8 3.8243 -9.6307 -2.7123 23 6 4.5243 -9.0809 -1.5943 24 6 3.6836 -7.9641 -0.9683 25 1 -0.4849 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8898 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8720 -3.6044 -0.8894 30 1 3.1356 -6.1345 -0.0004 31 1 0.1269 -8.3270 1.4776 32 1 1.0824 -6.9465 2.0997 33 1 3.1206 -8.2341 2.1437 34 1 1.9052 -9.4563 2.6430 35 1 3.4969 -9.9832 0.5280 36 1 1.7528 -10.3751 0.4233 37 1 0.7024 -9.6184 -1.4843 38 1 1.4453 -8.3895 -2.5379 39 1 2.1136 -10.6407 -3.2811 40 1 2.7211 -11.0184 -1.6507 41 1 5.4792 -8.6743 -1.9273 42 1 4.6997 -9.8622 -0.8548 43 1 3.5521 -7.1586 -1.6907 44 1 4.1893 -7.5806 -0.0821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408235186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:08 Heat of formation + Delta-G solvation = -105.554897 kcal Electronic energy + Delta-G solvation = -22947.397235 eV Core-core repulsion = 19670.578732 eV Total energy + Delta-G solvation = -3276.818502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -41.00271 -38.87267 -37.20732 -33.44860 -33.35938 -32.34926 -31.45786 -30.94302 -27.99335 -26.19162 -25.43340 -24.09428 -22.70410 -21.83990 -20.31510 -19.45166 -18.60170 -17.17040 -16.58357 -16.26952 -16.08667 -15.47749 -15.34043 -14.88565 -14.66926 -14.42635 -14.29347 -13.97950 -13.49288 -13.09462 -12.54492 -12.48142 -12.30416 -12.10556 -11.80894 -11.60400 -11.41000 -11.36101 -11.13013 -10.98943 -10.91412 -10.81283 -10.66884 -10.58147 -10.31162 -9.93596 -9.69785 -9.62616 -9.14524 -8.96513 -8.68630 -8.30349 -5.94615 -3.98951 3.29518 3.34283 3.40042 3.42583 3.57180 3.64580 4.17692 4.31533 4.40061 4.49104 4.76250 4.82938 4.86837 4.93974 5.04912 5.07645 5.20787 5.37940 5.39901 5.40278 5.41008 5.48130 5.53118 5.59818 5.61021 5.72376 5.75385 5.81131 5.89391 6.00942 6.10174 6.13378 6.22783 6.26171 6.27308 6.86447 6.92134 6.95078 7.76103 7.88556 7.94337 8.09140 8.40739 8.83999 9.09916 9.64494 11.16354 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.003499 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.249599 B = 7999.277696 C = 8393.901192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.739 5.739 14 C 0.151 3.849 15 H 0.089 0.911 16 C -0.134 4.134 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.144 4.144 21 C 0.062 3.938 22 O -0.383 6.383 23 C 0.061 3.939 24 C -0.150 4.150 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.397 0.603 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 -23.500 -0.218 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.394 5.394 14 C 0.046 3.954 15 H 0.107 0.893 16 C -0.173 4.173 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.068 4.068 20 C -0.182 4.182 21 C -0.015 4.015 22 O -0.301 6.301 23 C -0.015 4.015 24 C -0.187 4.187 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.387 -23.348 -0.409 24.492 hybrid contribution 0.733 0.970 0.339 1.263 sum 8.121 -22.378 -0.070 23.806 Atomic orbital electron populations 1.70001 1.06053 1.26548 1.50250 1.25026 0.94820 0.99210 0.95324 0.86595 0.79770 0.83539 0.78065 1.20673 1.21231 1.19895 1.21230 0.92914 0.91053 1.51321 0.92640 1.18887 0.93169 0.89375 0.98576 1.21864 1.00714 0.92150 1.02333 1.21563 0.88701 0.85748 0.74312 1.90661 1.14483 1.87684 1.48197 1.46529 1.10101 1.05214 1.77597 1.21479 0.95141 0.82784 0.96014 0.89331 1.22805 0.98313 0.99539 0.96651 1.22509 0.98850 0.97824 0.96863 1.22553 1.01688 0.97211 0.94154 1.21230 0.95193 0.95163 0.95186 1.22260 0.98948 0.99499 0.97455 1.22594 0.84175 0.94256 1.00433 1.87933 1.32752 1.76436 1.33014 1.22646 0.95106 0.94885 0.88908 1.22209 0.95476 0.99527 1.01527 0.92972 0.95866 0.95859 0.90396 0.90378 0.76669 0.91114 0.90906 0.91529 0.91587 0.91343 0.91213 0.90513 0.90653 0.88979 0.93157 0.88821 0.93048 0.89974 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 11 C 0.51 9.82 7.82 -10.99 -0.09 9.74 16 12 O -0.53 -12.68 15.66 5.55 0.09 -12.59 16 13 N -0.74 -10.35 4.47 -52.67 -0.24 -10.58 16 14 C 0.15 1.89 2.87 -66.76 -0.19 1.70 16 15 H 0.09 1.32 7.15 -51.93 -0.37 0.95 16 16 C -0.13 -1.56 6.53 -25.00 -0.16 -1.73 16 17 C -0.12 -1.08 6.91 -24.68 -0.17 -1.25 16 18 C -0.12 -0.92 4.78 -25.21 -0.12 -1.04 16 19 C -0.07 -0.62 0.63 -153.79 -0.10 -0.72 16 20 C -0.14 -1.31 4.56 -26.76 -0.12 -1.43 16 21 C 0.06 0.51 6.64 37.24 0.25 0.76 16 22 O -0.38 -3.95 10.75 -35.23 -0.38 -4.33 16 23 C 0.06 0.50 6.62 37.24 0.25 0.75 16 24 C -0.15 -1.32 3.50 -26.76 -0.09 -1.41 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.53 5.81 -40.82 -0.24 4.29 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.47 6.07 -51.93 -0.32 0.16 16 36 H 0.07 0.50 7.78 -51.93 -0.40 0.10 16 37 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.36 7.47 -51.93 -0.39 -0.03 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16 43 H 0.08 0.85 7.57 -51.93 -0.39 0.46 16 44 H 0.08 0.59 7.11 -51.93 -0.37 0.22 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -34.09 339.26 -8.35 -42.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.41 Total: 0.47 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.24 Total: -10.38 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.50 Total: -37.52 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.29 Total: -16.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.09 -8.35 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408235186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.110 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds