Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48492 * 109.47003 * 269.99409 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99450 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99179 * 3 2 1 7 7 C 1.37880 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99438 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00266 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.08015 * 35.03076 * 14 13 11 16 16 C 1.54360 * 110.05737 * 273.54971 * 14 13 11 17 17 C 1.54923 * 104.31951 * 264.38235 * 16 14 13 18 18 C 1.54958 * 102.79030 * 322.17311 * 17 16 14 19 19 C 1.53873 * 110.11334 * 156.68735 * 14 13 11 20 20 C 1.52782 * 110.07097 * 238.36338 * 19 14 13 21 21 C 1.53165 * 109.18819 * 177.38560 * 20 19 14 22 22 O 1.42915 * 109.35867 * 303.07100 * 21 20 19 23 23 C 1.42902 * 114.17937 * 61.52827 * 22 21 20 24 24 C 1.52783 * 110.04192 * 359.78159 * 19 14 13 25 25 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46510 * 60.00257 * 9 7 2 27 27 H 1.08992 * 109.47554 * 300.00257 * 9 7 2 28 28 H 1.08996 * 109.46970 * 60.00571 * 10 9 7 29 29 H 1.08999 * 109.47652 * 300.00285 * 10 9 7 30 30 H 0.97004 * 120.00172 * 0.02562 * 13 11 10 31 31 H 1.09002 * 110.48535 * 145.63400 * 16 14 13 32 32 H 1.08998 * 110.48536 * 23.12703 * 16 14 13 33 33 H 1.08996 * 110.74725 * 80.50509 * 17 16 14 34 34 H 1.09006 * 110.74308 * 203.85095 * 17 16 14 35 35 H 1.09004 * 110.49875 * 156.30545 * 18 17 16 36 36 H 1.08999 * 110.50815 * 278.85788 * 18 17 16 37 37 H 1.09000 * 109.51619 * 297.29287 * 20 19 14 38 38 H 1.09002 * 109.51991 * 57.46804 * 20 19 14 39 39 H 1.09005 * 109.49193 * 183.10750 * 21 20 19 40 40 H 1.09000 * 109.49359 * 63.03597 * 21 20 19 41 41 H 1.09002 * 109.49089 * 178.49856 * 23 22 21 42 42 H 1.09001 * 109.50689 * 58.44187 * 23 22 21 43 43 H 1.08997 * 109.51882 * 302.50757 * 24 19 14 44 44 H 1.09002 * 109.51547 * 62.67534 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2789 -4.9671 -0.0010 13 7 2.1655 -6.1344 -0.0007 14 6 1.4331 -7.4031 -0.0019 15 1 0.5202 -7.3077 -0.5898 16 6 1.0902 -7.8178 1.4449 17 6 2.2300 -8.7873 1.8460 18 6 2.4857 -9.5764 0.5371 19 6 2.3179 -8.5244 -0.5743 20 6 1.6417 -9.1572 -1.7894 21 6 2.5671 -10.2245 -2.3815 22 8 3.8243 -9.6307 -2.7123 23 6 4.5243 -9.0809 -1.5943 24 6 3.6836 -7.9641 -0.9683 25 1 -0.4849 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8898 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8720 -3.6044 -0.8894 30 1 3.1356 -6.1345 -0.0004 31 1 0.1269 -8.3270 1.4776 32 1 1.0824 -6.9465 2.0997 33 1 3.1206 -8.2341 2.1437 34 1 1.9052 -9.4563 2.6430 35 1 3.4969 -9.9832 0.5280 36 1 1.7528 -10.3751 0.4233 37 1 0.7024 -9.6184 -1.4843 38 1 1.4453 -8.3895 -2.5379 39 1 2.1136 -10.6407 -3.2811 40 1 2.7211 -11.0184 -1.6507 41 1 5.4792 -8.6743 -1.9273 42 1 4.6997 -9.8622 -0.8548 43 1 3.5521 -7.1586 -1.6907 44 1 4.1893 -7.5806 -0.0821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408235186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = -128.553890 kcal Electronic energy + Delta-G solvation = -22948.394546 eV Core-core repulsion = 19670.578732 eV Total energy + Delta-G solvation = -3277.815814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91306 -40.22720 -38.14803 -35.57750 -34.67015 -33.14850 -32.92085 -32.13511 -29.18311 -27.43546 -26.81678 -24.88626 -23.81364 -23.25266 -21.54303 -20.84070 -19.38682 -18.84068 -17.90206 -17.44558 -16.93665 -16.76641 -16.47505 -16.27920 -16.03581 -15.71095 -15.22900 -14.94682 -14.49753 -14.37328 -14.17579 -14.14732 -13.30277 -13.17982 -12.99201 -12.88173 -12.76570 -12.49598 -12.33892 -12.27354 -12.12674 -11.93709 -11.79586 -11.64852 -11.57490 -11.36849 -11.31546 -11.01014 -10.69546 -10.58059 -10.40658 -9.96275 -8.18897 -6.33314 1.41385 1.44424 1.55330 1.71950 2.25956 2.44613 3.02241 3.14006 3.36563 3.52822 3.66783 4.02241 4.10632 4.12949 4.14687 4.24106 4.29800 4.34032 4.47142 4.52974 4.55391 4.63059 4.71055 4.75025 4.77177 4.78025 4.81366 4.95086 5.03077 5.05888 5.10308 5.15803 5.19042 5.23767 5.41792 5.43925 5.47514 5.61345 5.64313 5.84211 6.16512 6.32705 6.61241 6.85140 7.35804 7.37893 8.93892 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.003499 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.249599 B = 7999.277696 C = 8393.901192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.120 4.120 11 C 0.509 3.491 12 O -0.590 6.590 13 N -0.712 5.712 14 C 0.145 3.855 15 H 0.057 0.943 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.060 4.060 20 C -0.144 4.144 21 C 0.063 3.937 22 O -0.406 6.406 23 C 0.061 3.939 24 C -0.151 4.151 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.018 1.018 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.413 0.587 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -24.982 0.300 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.160 4.160 11 C 0.297 3.703 12 O -0.470 6.470 13 N -0.367 5.367 14 C 0.040 3.960 15 H 0.075 0.925 16 C -0.175 4.175 17 C -0.152 4.152 18 C -0.147 4.147 19 C -0.061 4.061 20 C -0.182 4.182 21 C -0.013 4.013 22 O -0.325 6.325 23 C -0.016 4.016 24 C -0.189 4.189 25 H 0.071 0.929 26 H -0.002 1.002 27 H 0.000 1.000 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.688 -24.882 0.110 27.081 hybrid contribution -0.333 1.387 0.162 1.435 sum 10.355 -23.496 0.272 25.678 Atomic orbital electron populations 1.70185 1.08360 1.27821 1.51454 1.26156 0.95726 1.04001 0.94572 0.85303 0.78683 0.77611 0.78539 1.19704 1.21135 1.17813 1.21717 0.93995 0.91601 1.50855 0.90590 1.18672 0.93677 0.92522 0.94572 1.21639 0.99336 0.90365 1.04643 1.21344 0.87872 0.86909 0.74138 1.90645 1.16717 1.88431 1.51166 1.46246 1.10868 1.04424 1.75157 1.21664 0.94762 0.82849 0.96763 0.92451 1.22780 1.00058 0.99416 0.95235 1.22483 0.97500 0.97292 0.97878 1.22543 1.03340 0.96587 0.92241 1.21191 0.94749 0.94339 0.95807 1.22256 0.99822 0.99316 0.96791 1.22678 0.83278 0.94027 1.01317 1.87910 1.33448 1.76733 1.34425 1.22769 0.94945 0.94978 0.88866 1.22224 0.95380 0.99520 1.01765 0.92851 1.00153 0.99999 0.87843 0.88029 0.74674 0.90992 0.93629 0.90979 0.90053 0.89185 0.90062 0.89721 0.93231 0.88314 0.91061 0.87872 0.90981 0.91975 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.29 21.45 0.28 -60.11 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.47 4.26 29.85 0.13 2.59 16 10 C -0.12 -4.96 5.64 29.85 0.17 -4.79 16 11 C 0.51 20.35 7.82 87.66 0.69 21.04 16 12 O -0.59 -29.90 15.66 -3.04 -0.05 -29.94 16 13 N -0.71 -19.88 4.47 -438.95 -1.96 -21.84 16 14 C 0.14 3.63 2.87 45.75 0.13 3.76 16 15 H 0.06 1.82 7.15 -2.39 -0.02 1.80 16 16 C -0.14 -3.13 6.53 31.71 0.21 -2.92 16 17 C -0.11 -1.68 6.91 31.92 0.22 -1.46 16 18 C -0.11 -1.32 4.78 31.58 0.15 -1.16 16 19 C -0.06 -1.02 0.63 -51.71 -0.03 -1.05 16 20 C -0.14 -2.48 4.56 30.58 0.14 -2.34 16 21 C 0.06 0.90 6.64 72.04 0.48 1.38 16 22 O -0.41 -7.46 10.75 -148.98 -1.60 -9.07 16 23 C 0.06 0.80 6.62 72.04 0.48 1.28 16 24 C -0.15 -2.31 3.50 30.58 0.11 -2.20 16 25 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 26 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 27 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 28 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.41 8.77 5.81 -92.71 -0.54 8.23 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 0.78 6.07 -2.38 -0.01 0.76 16 36 H 0.08 0.85 7.78 -2.39 -0.02 0.83 16 37 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 40 H 0.07 0.74 7.47 -2.39 -0.02 0.72 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 0.68 6.43 -2.39 -0.02 0.66 16 43 H 0.06 1.21 7.57 -2.39 -0.02 1.19 16 44 H 0.09 1.11 7.11 -2.39 -0.02 1.09 16 Total: -1.00 -78.84 339.26 2.69 -76.14 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.44 Total: 15.12 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 3.56 Total: -17.08 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.68 Total: -81.95 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.65 Total: -39.01 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.84 2.69 -76.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408235186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.411 kcal (2) G-P(sol) polarization free energy of solvation -78.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds