Wall clock time and date at job start Tue Mar 31 2020 07:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 113.28701 * 2 1 4 4 C 1.53762 * 114.39349 * 226.65049 * 2 1 3 5 5 N 1.47066 * 87.88767 * 272.67513 * 4 2 1 6 6 C 1.34774 * 136.05424 * 152.96069 * 5 4 2 7 7 O 1.21288 * 120.00049 * 179.63138 * 6 5 4 8 8 C 1.50699 * 120.00325 * 359.63248 * 6 5 4 9 9 C 1.53001 * 109.47500 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48498 * 109.47200 * 59.99994 * 14 12 10 16 16 H 1.48498 * 109.46671 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47156 * 300.00008 * 14 12 10 18 18 C 1.47067 * 87.88835 * 332.70619 * 5 4 2 19 19 H 1.08999 * 113.46864 * 142.12129 * 18 5 4 20 20 C 1.53004 * 113.46825 * 272.56194 * 18 5 4 21 21 H 1.09002 * 110.32523 * 42.74290 * 20 18 5 22 22 C 1.54477 * 110.36865 * 280.49338 * 20 18 5 23 23 C 1.54506 * 104.06211 * 217.18833 * 22 20 18 24 24 C 1.54480 * 104.06126 * 0.02562 * 23 22 20 25 25 O 1.44423 * 110.37095 * 165.11063 * 20 18 5 26 26 H 1.09002 * 109.46832 * 286.93455 * 1 2 3 27 27 H 1.08997 * 109.47103 * 46.93373 * 1 2 3 28 28 H 1.08999 * 109.47107 * 166.93495 * 1 2 3 29 29 H 1.09000 * 109.47790 * 193.06949 * 3 2 1 30 30 H 1.09006 * 109.47055 * 313.06958 * 3 2 1 31 31 H 1.08997 * 109.47032 * 73.06441 * 3 2 1 32 32 H 1.09004 * 113.46497 * 157.94337 * 4 2 1 33 33 H 1.08996 * 113.55229 * 27.42557 * 4 2 1 34 34 H 1.09000 * 109.46737 * 59.99782 * 8 6 5 35 35 H 1.09002 * 109.46890 * 299.99893 * 8 6 5 36 36 H 1.08998 * 109.46837 * 60.00023 * 9 8 6 37 37 H 1.09002 * 109.46926 * 299.99827 * 9 8 6 38 38 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 39 39 H 1.08999 * 110.51478 * 335.83536 * 22 20 18 40 40 H 1.09006 * 110.50939 * 98.54646 * 22 20 18 41 41 H 1.08994 * 110.51344 * 118.64555 * 23 22 20 42 42 H 1.09004 * 110.51322 * 241.22332 * 23 22 20 43 43 H 1.09000 * 110.37445 * 142.80922 * 24 23 22 44 44 H 1.09006 * 110.37024 * 265.03643 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4053 0.0000 4 6 2.1650 -0.9613 -1.0183 5 7 2.0801 -2.0144 0.0047 6 6 1.9799 -3.3584 0.0079 7 8 1.9352 -3.9607 1.0596 8 6 1.9232 -4.1128 -1.2954 9 6 1.8108 -5.6122 -1.0124 10 6 1.7547 -6.3667 -2.3157 11 1 1.7949 -5.8304 -3.2523 12 6 1.6523 -7.7417 -2.3124 13 7 1.6029 -8.3947 -1.1719 14 14 1.5751 -8.6763 -3.9280 15 1 2.8071 -8.4102 -4.7132 16 1 1.4685 -10.1317 -3.6532 17 1 0.3889 -8.2300 -4.7019 18 6 2.1594 -0.9560 1.0228 19 1 1.5267 -1.1406 1.8910 20 6 3.5936 -0.5829 1.4035 21 1 4.2176 -0.5194 0.5120 22 6 4.1735 -1.6173 2.3935 23 6 5.0299 -0.7710 3.3618 24 6 4.8654 0.6747 2.8427 25 8 3.6130 0.6687 2.1239 26 1 -0.3633 0.2993 0.9831 27 1 -0.3633 0.7017 -0.7508 28 1 -0.3633 -1.0011 -0.2323 29 1 3.1980 1.3434 -0.2324 30 1 1.6338 2.0165 -0.7508 31 1 2.0035 1.8574 0.9831 32 1 3.1883 -0.6968 -1.2852 33 1 1.5372 -1.1503 -1.8890 34 1 2.8301 -3.9177 -1.8678 35 1 1.0550 -3.7854 -1.8673 36 1 0.9037 -5.8069 -0.4402 37 1 2.6787 -5.9400 -0.4403 38 1 1.5312 -9.3621 -1.1697 39 1 3.3716 -2.1208 2.9333 40 1 4.7952 -2.3421 1.8678 41 1 4.6512 -0.8560 4.3803 42 1 6.0745 -1.0790 3.3167 43 1 4.8211 1.3747 3.6770 44 1 5.6866 0.9335 2.1743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:21 Heat of formation + Delta-G solvation = -60.197750 kcal Electronic energy + Delta-G solvation = -23016.610540 eV Core-core repulsion = 19741.758871 eV Total energy + Delta-G solvation = -3274.851669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19356 -38.93299 -37.72679 -33.44970 -32.61492 -31.96490 -30.97145 -30.00927 -27.43441 -26.96477 -25.60477 -24.87767 -22.53322 -21.52299 -20.94441 -19.09468 -18.17159 -17.05360 -16.53894 -16.03200 -15.96486 -15.46625 -14.98440 -14.79368 -14.41348 -14.29434 -13.90518 -13.70264 -13.60650 -12.78925 -12.38909 -12.32804 -12.19048 -12.09630 -11.91346 -11.73381 -11.61243 -11.43475 -11.26375 -11.10900 -11.00750 -10.90984 -10.70446 -10.61677 -10.14185 -9.95459 -9.86658 -9.65441 -9.17780 -9.00301 -8.45057 -8.31006 -5.95932 -4.00483 2.89465 3.25088 3.34474 3.39114 3.40966 3.85462 4.05254 4.43073 4.47216 4.58334 4.75441 4.78279 4.87537 5.01967 5.09507 5.16322 5.21773 5.27232 5.38852 5.45783 5.49141 5.53154 5.61445 5.68934 5.73417 5.81036 5.86813 5.89859 5.90340 5.96778 6.08522 6.10812 6.16384 6.23185 6.32469 6.35382 6.68304 6.90827 7.73810 7.85618 8.05004 8.08732 8.38383 8.74308 9.07535 9.62922 11.14989 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.003892 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.373717 B = 7193.162057 C = 7907.186998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 C -0.125 4.125 4 C 0.104 3.896 5 N -0.643 5.643 6 C 0.540 3.460 7 O -0.529 6.529 8 C -0.121 4.121 9 C 0.038 3.962 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.142 3.858 19 H 0.088 0.912 20 C 0.079 3.921 21 H 0.072 0.928 22 C -0.147 4.147 23 C -0.155 4.155 24 C 0.044 3.956 25 O -0.361 6.361 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 22.490 4.277 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 C -0.182 4.182 4 C -0.020 4.020 5 N -0.381 5.381 6 C 0.332 3.668 7 O -0.403 6.403 8 C -0.161 4.161 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.037 3.963 19 H 0.106 0.894 20 C 0.020 3.980 21 H 0.090 0.910 22 C -0.185 4.185 23 C -0.193 4.193 24 C -0.033 4.033 25 O -0.279 6.279 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.147 21.836 4.934 22.767 hybrid contribution 0.335 -0.852 -0.851 1.250 sum 4.482 20.983 4.083 21.842 Atomic orbital electron populations 1.21488 0.91989 1.02463 1.02092 1.22250 0.96459 0.94622 0.96061 1.21611 1.00157 0.94007 1.02472 1.23227 1.00510 0.84695 0.93529 1.49915 1.74744 1.04062 1.09405 1.21299 0.74048 0.78346 0.93091 1.90680 1.49161 1.66227 1.34267 1.21825 1.02384 0.99728 0.92155 1.18907 0.98530 0.85700 0.96837 1.21171 1.51239 0.91727 0.92457 0.92670 1.25021 0.95280 0.97807 0.96202 1.69991 1.49846 1.07921 1.25071 0.86647 0.78560 0.78796 0.83898 1.20256 1.21265 1.20220 1.22343 0.94017 0.85395 0.94544 0.89394 1.23046 0.96049 0.83819 0.95081 0.91012 1.22919 1.00256 0.98156 0.97170 1.22940 1.00791 0.95253 1.00272 1.23387 0.87038 0.96985 0.95841 1.89134 1.38092 1.37133 1.63567 0.92084 0.91942 0.91971 0.92367 0.92739 0.91094 0.90203 0.90105 0.90414 0.90328 0.95794 0.95881 0.92887 0.90018 0.90539 0.90725 0.90687 0.89169 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.24 37.16 0.34 -0.92 16 2 C -0.09 -0.99 1.50 -153.86 -0.23 -1.22 16 3 C -0.12 -1.10 7.74 37.16 0.29 -0.82 16 4 C 0.10 1.20 7.19 -8.36 -0.06 1.14 16 5 N -0.64 -9.93 3.30 -177.15 -0.58 -10.52 16 6 C 0.54 10.94 8.08 -10.99 -0.09 10.85 16 7 O -0.53 -12.86 16.76 5.55 0.09 -12.76 16 8 C -0.12 -2.56 5.47 -27.88 -0.15 -2.71 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.92 16 10 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.14 1.88 3.42 -72.38 -0.25 1.63 16 19 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 20 C 0.08 0.94 2.28 -25.95 -0.06 0.88 16 21 H 0.07 0.82 6.82 -51.93 -0.35 0.47 16 22 C -0.15 -1.88 6.63 -25.17 -0.17 -2.04 16 23 C -0.15 -1.49 7.09 -25.16 -0.18 -1.67 16 24 C 0.04 0.39 7.63 37.93 0.29 0.68 16 25 O -0.36 -3.98 8.83 -35.23 -0.31 -4.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 29 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 30 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 32 H 0.08 0.80 7.09 -51.93 -0.37 0.44 16 33 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 1.21 7.84 -51.93 -0.41 0.81 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -33.51 351.70 -8.30 -41.81 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.72 Total: -2.31 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.79 Total: -7.11 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.15 Total: -37.40 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.22 Total: -17.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.51 -8.30 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.388 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds