Wall clock time and date at job start Tue Mar 31 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.41103 * 2 1 4 4 C 1.53758 * 114.39813 * 226.79029 * 2 1 3 5 5 N 1.47061 * 87.88595 * 272.67186 * 4 2 1 6 6 C 1.34784 * 136.05697 * 152.96014 * 5 4 2 7 7 O 1.21279 * 119.99925 * 179.62935 * 6 5 4 8 8 C 1.50700 * 119.99961 * 359.63167 * 6 5 4 9 9 C 1.52992 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99915 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 90.00701 * 14 12 10 16 16 H 1.48505 * 109.47302 * 210.00596 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00397 * 14 12 10 18 18 C 1.47062 * 87.88485 * 332.70566 * 5 4 2 19 19 H 1.09000 * 113.46348 * 272.55688 * 18 5 4 20 20 C 1.53005 * 113.46777 * 142.18419 * 18 5 4 21 21 H 1.08998 * 109.86898 * 318.49274 * 20 18 5 22 22 C 1.54103 * 109.88045 * 79.50197 * 20 18 5 23 23 C 1.54804 * 104.18691 * 121.45594 * 22 20 18 24 24 C 1.54999 * 102.09568 * 20.87778 * 23 22 20 25 25 O 1.43748 * 109.87834 * 197.33594 * 20 18 5 26 26 H 1.08997 * 109.47227 * 286.79343 * 1 2 3 27 27 H 1.08999 * 109.47448 * 46.79910 * 1 2 3 28 28 H 1.09001 * 109.46950 * 166.79993 * 1 2 3 29 29 H 1.09002 * 109.47326 * 193.19955 * 3 2 1 30 30 H 1.08998 * 109.47190 * 313.20527 * 3 2 1 31 31 H 1.09005 * 109.47322 * 73.20354 * 3 2 1 32 32 H 1.09001 * 113.46754 * 157.93391 * 4 2 1 33 33 H 1.09001 * 113.54710 * 27.41916 * 4 2 1 34 34 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 35 35 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 36 36 H 1.09004 * 109.47330 * 299.99977 * 9 8 6 37 37 H 1.09005 * 109.47124 * 59.99773 * 9 8 6 38 38 H 0.97000 * 119.99655 * 179.97438 * 13 12 10 39 39 H 1.09003 * 110.48233 * 240.12938 * 22 20 18 40 40 H 1.08997 * 110.48983 * 2.64389 * 22 20 18 41 41 H 1.09004 * 110.91104 * 139.07529 * 23 22 20 42 42 H 1.09006 * 110.90968 * 262.68167 * 23 22 20 43 43 H 1.09003 * 110.61525 * 81.47485 * 24 23 22 44 44 H 1.08995 * 110.61991 * 204.32013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1651 -0.9587 -1.0206 5 7 2.0803 -2.0142 -0.0001 6 6 1.9801 -3.3584 -0.0001 7 8 1.9355 -3.9631 1.0502 8 6 1.9235 -4.1097 -1.3052 9 6 1.8112 -5.6097 -1.0257 10 6 1.7540 -6.3610 -2.3309 11 1 1.7933 -5.8224 -3.2661 12 6 1.6503 -7.7358 -2.3309 13 7 1.6009 -8.3915 -3.4699 14 14 1.5815 -8.6674 -0.7132 15 1 0.1671 -8.8091 -0.2834 16 1 2.1820 -10.0139 -0.8913 17 1 2.3407 -7.9198 0.3212 18 6 2.1594 -0.9583 1.0204 19 1 3.1811 -0.6932 1.2923 20 6 1.2725 -1.2211 2.2392 21 1 0.3077 -1.6132 1.9176 22 6 1.9604 -2.2290 3.1804 23 6 2.0870 -1.4689 4.5230 24 6 1.0077 -0.3663 4.3750 25 8 1.0861 -0.0033 2.9798 26 1 -0.3633 0.2969 0.9838 27 1 -0.3634 0.7035 -0.7491 28 1 -0.3633 -1.0005 -0.2347 29 1 3.2004 1.3400 -0.2347 30 1 1.6366 2.0170 -0.7491 31 1 2.0097 1.8555 0.9839 32 1 3.1882 -0.6935 -1.2869 33 1 1.5372 -1.1457 -1.8917 34 1 1.0553 -3.7809 -1.8764 35 1 2.8303 -3.9132 -1.8773 36 1 2.6791 -5.9388 -0.4544 37 1 0.9041 -5.8058 -0.4539 38 1 1.5283 -9.3588 -3.4699 39 1 1.3434 -3.1192 3.3026 40 1 2.9449 -2.4979 2.7975 41 1 1.8606 -2.1244 5.3640 42 1 3.0791 -1.0302 4.6296 43 1 0.0203 -0.7612 4.6139 44 1 1.2421 0.4880 5.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:25 Heat of formation + Delta-G solvation = -57.918632 kcal Electronic energy + Delta-G solvation = -23256.521171 eV Core-core repulsion = 19981.768332 eV Total energy + Delta-G solvation = -3274.752839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15187 -38.90160 -37.86606 -33.48831 -32.54710 -32.03520 -31.22488 -30.11361 -27.66872 -27.22202 -25.55339 -24.95407 -22.24805 -21.36785 -20.65321 -19.19034 -18.47323 -17.17351 -16.44746 -16.35011 -16.18593 -15.49737 -14.91111 -14.75140 -14.16302 -14.16184 -13.89798 -13.80499 -13.63013 -12.77672 -12.61760 -12.51733 -12.27343 -12.18290 -11.97500 -11.76975 -11.67852 -11.46788 -11.34639 -11.26469 -11.11269 -10.96845 -10.72572 -10.16397 -10.04754 -10.02304 -9.78815 -9.70788 -9.20120 -9.10618 -8.55125 -8.49615 -6.03431 -4.02097 2.88800 3.09802 3.36910 3.43471 3.54139 3.83654 4.11828 4.50200 4.53072 4.64386 4.68169 4.82177 4.91156 4.98423 5.05821 5.14192 5.23800 5.26306 5.32035 5.47752 5.51173 5.56178 5.58330 5.64103 5.71765 5.76485 5.82687 5.87827 5.90338 6.02841 6.09170 6.11346 6.12245 6.17864 6.23673 6.32192 6.69631 6.82919 7.35269 7.42814 7.77095 7.98274 8.49013 8.63259 8.99660 9.59578 11.09475 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.004564 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.858467 B = 6133.434762 C = 7129.633987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.105 3.895 5 N -0.644 5.644 6 C 0.539 3.461 7 O -0.534 6.534 8 C -0.114 4.114 9 C 0.003 3.997 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C 0.140 3.860 19 H 0.091 0.909 20 C 0.080 3.920 21 H 0.073 0.927 22 C -0.135 4.135 23 C -0.159 4.159 24 C 0.047 3.953 25 O -0.370 6.370 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 21.635 11.540 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.189 4.189 4 C -0.019 4.019 5 N -0.383 5.383 6 C 0.331 3.669 7 O -0.409 6.409 8 C -0.154 4.154 9 C -0.035 4.035 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.542 5.542 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 C 0.036 3.964 19 H 0.108 0.892 20 C 0.022 3.978 21 H 0.091 0.909 22 C -0.173 4.173 23 C -0.197 4.197 24 C -0.029 4.029 25 O -0.288 6.288 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.122 21.044 11.940 24.195 hybrid contribution 0.095 -0.919 0.769 1.202 sum 0.218 20.124 12.709 23.802 Atomic orbital electron populations 1.21535 0.92024 1.02098 1.02554 1.22233 0.96733 0.94371 0.95770 1.21622 1.00124 0.94504 1.02624 1.23198 1.00811 0.84475 0.93367 1.49848 1.74802 1.04041 1.09627 1.21214 0.74102 0.78588 0.92986 1.90648 1.49797 1.66314 1.34189 1.21613 1.03164 0.98221 0.92367 1.19371 0.97537 0.89027 0.97562 1.21105 1.50975 0.91840 0.92314 0.90965 1.24961 0.94350 0.97658 0.96198 1.69914 1.50838 1.08004 1.25481 0.86801 0.78871 0.79053 0.84851 1.20248 1.21427 1.18581 1.22768 0.98632 0.85332 0.89692 0.89175 1.22782 0.98385 0.84709 0.91952 0.90888 1.22875 1.02638 0.98451 0.93338 1.23195 0.99826 0.98008 0.98623 1.23520 0.98119 0.97896 0.83401 1.88813 1.93921 1.28842 1.17237 0.91257 0.92150 0.92297 0.92451 0.92132 0.91491 0.89859 0.89972 0.89822 0.89807 0.95871 0.96304 0.92717 0.90013 0.90421 0.90481 0.90867 0.92388 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.03 37.15 0.30 -0.99 16 2 C -0.09 -0.92 1.33 -153.86 -0.21 -1.12 16 3 C -0.13 -1.05 9.30 37.16 0.35 -0.71 16 4 C 0.10 1.14 7.54 -8.38 -0.06 1.08 16 5 N -0.64 -9.39 3.37 -177.22 -0.60 -9.99 16 6 C 0.54 10.10 7.98 -10.98 -0.09 10.01 16 7 O -0.53 -11.53 13.72 5.56 0.08 -11.45 16 8 C -0.11 -2.28 5.47 -27.89 -0.15 -2.44 16 9 C 0.00 0.07 3.33 -27.89 -0.09 -0.02 16 10 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 14 Si 0.88 22.71 27.47 -169.99 -4.67 18.04 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 18 C 0.14 1.75 2.95 -72.41 -0.21 1.53 16 19 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 20 C 0.08 1.05 2.21 -26.15 -0.06 0.99 16 21 H 0.07 1.08 7.21 -51.93 -0.37 0.70 16 22 C -0.14 -1.85 4.84 -25.20 -0.12 -1.97 16 23 C -0.16 -1.64 7.15 -24.72 -0.18 -1.81 16 24 C 0.05 0.46 7.72 38.21 0.29 0.75 16 25 O -0.37 -4.41 10.39 -35.23 -0.37 -4.77 16 26 H 0.07 0.75 6.80 -51.93 -0.35 0.39 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 29 H 0.06 0.42 7.89 -51.93 -0.41 0.01 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 33 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.08 1.27 7.71 -51.93 -0.40 0.87 16 40 H 0.08 1.18 7.32 -51.93 -0.38 0.80 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -32.97 345.87 -7.97 -40.94 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.73 Total: -2.43 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.66 Total: -8.18 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.18 Total: -37.36 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.23 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.67 Total: 18.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -7.97 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.977 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds