Wall clock time and date at job start Tue Mar 31 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.41103 * 2 1 4 4 C 1.53758 * 114.39813 * 226.79029 * 2 1 3 5 5 N 1.47061 * 87.88595 * 272.67186 * 4 2 1 6 6 C 1.34784 * 136.05697 * 152.96014 * 5 4 2 7 7 O 1.21279 * 119.99925 * 179.62935 * 6 5 4 8 8 C 1.50700 * 119.99961 * 359.63167 * 6 5 4 9 9 C 1.52992 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99915 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 90.00701 * 14 12 10 16 16 H 1.48505 * 109.47302 * 210.00596 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00397 * 14 12 10 18 18 C 1.47062 * 87.88485 * 332.70566 * 5 4 2 19 19 H 1.09000 * 113.46348 * 272.55688 * 18 5 4 20 20 C 1.53005 * 113.46777 * 142.18419 * 18 5 4 21 21 H 1.08998 * 109.86898 * 318.49274 * 20 18 5 22 22 C 1.54103 * 109.88045 * 79.50197 * 20 18 5 23 23 C 1.54804 * 104.18691 * 121.45594 * 22 20 18 24 24 C 1.54999 * 102.09568 * 20.87778 * 23 22 20 25 25 O 1.43748 * 109.87834 * 197.33594 * 20 18 5 26 26 H 1.08997 * 109.47227 * 286.79343 * 1 2 3 27 27 H 1.08999 * 109.47448 * 46.79910 * 1 2 3 28 28 H 1.09001 * 109.46950 * 166.79993 * 1 2 3 29 29 H 1.09002 * 109.47326 * 193.19955 * 3 2 1 30 30 H 1.08998 * 109.47190 * 313.20527 * 3 2 1 31 31 H 1.09005 * 109.47322 * 73.20354 * 3 2 1 32 32 H 1.09001 * 113.46754 * 157.93391 * 4 2 1 33 33 H 1.09001 * 113.54710 * 27.41916 * 4 2 1 34 34 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 35 35 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 36 36 H 1.09004 * 109.47330 * 299.99977 * 9 8 6 37 37 H 1.09005 * 109.47124 * 59.99773 * 9 8 6 38 38 H 0.97000 * 119.99655 * 179.97438 * 13 12 10 39 39 H 1.09003 * 110.48233 * 240.12938 * 22 20 18 40 40 H 1.08997 * 110.48983 * 2.64389 * 22 20 18 41 41 H 1.09004 * 110.91104 * 139.07529 * 23 22 20 42 42 H 1.09006 * 110.90968 * 262.68167 * 23 22 20 43 43 H 1.09003 * 110.61525 * 81.47485 * 24 23 22 44 44 H 1.08995 * 110.61991 * 204.32013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1651 -0.9587 -1.0206 5 7 2.0803 -2.0142 -0.0001 6 6 1.9801 -3.3584 -0.0001 7 8 1.9355 -3.9631 1.0502 8 6 1.9235 -4.1097 -1.3052 9 6 1.8112 -5.6097 -1.0257 10 6 1.7540 -6.3610 -2.3309 11 1 1.7933 -5.8224 -3.2661 12 6 1.6503 -7.7358 -2.3309 13 7 1.6009 -8.3915 -3.4699 14 14 1.5815 -8.6674 -0.7132 15 1 0.1671 -8.8091 -0.2834 16 1 2.1820 -10.0139 -0.8913 17 1 2.3407 -7.9198 0.3212 18 6 2.1594 -0.9583 1.0204 19 1 3.1811 -0.6932 1.2923 20 6 1.2725 -1.2211 2.2392 21 1 0.3077 -1.6132 1.9176 22 6 1.9604 -2.2290 3.1804 23 6 2.0870 -1.4689 4.5230 24 6 1.0077 -0.3663 4.3750 25 8 1.0861 -0.0033 2.9798 26 1 -0.3633 0.2969 0.9838 27 1 -0.3634 0.7035 -0.7491 28 1 -0.3633 -1.0005 -0.2347 29 1 3.2004 1.3400 -0.2347 30 1 1.6366 2.0170 -0.7491 31 1 2.0097 1.8555 0.9839 32 1 3.1882 -0.6935 -1.2869 33 1 1.5372 -1.1457 -1.8917 34 1 1.0553 -3.7809 -1.8764 35 1 2.8303 -3.9132 -1.8773 36 1 2.6791 -5.9388 -0.4544 37 1 0.9041 -5.8058 -0.4539 38 1 1.5283 -9.3588 -3.4699 39 1 1.3434 -3.1192 3.3026 40 1 2.9449 -2.4979 2.7975 41 1 1.8606 -2.1244 5.3640 42 1 3.0791 -1.0302 4.6296 43 1 0.0203 -0.7612 4.6139 44 1 1.2421 0.4880 5.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408237151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:25 Heat of formation + Delta-G solvation = -78.967837 kcal Electronic energy + Delta-G solvation = -23257.433933 eV Core-core repulsion = 19981.768332 eV Total energy + Delta-G solvation = -3275.665601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20147 -39.96272 -39.17328 -35.57676 -33.66253 -33.33664 -32.80643 -31.09675 -28.88615 -28.26909 -26.88362 -26.14757 -23.21529 -22.93813 -21.93231 -20.44480 -19.51926 -19.10679 -17.77378 -17.44159 -17.19508 -16.79251 -16.31666 -16.21087 -15.74735 -15.18839 -15.06067 -14.81675 -14.67373 -14.58851 -14.14593 -13.84093 -13.47182 -13.14447 -12.97271 -12.95978 -12.85323 -12.71136 -12.59496 -12.25450 -12.12084 -12.06509 -12.03738 -11.97526 -11.80812 -11.66980 -11.43450 -10.95004 -10.80894 -10.67506 -10.56504 -9.71315 -8.34212 -6.37333 1.30389 1.32167 1.47241 1.63790 1.75702 2.32232 2.87497 3.01321 3.22003 3.58103 3.64057 3.70257 3.89462 3.97641 4.03156 4.19422 4.23528 4.29676 4.32609 4.38032 4.42587 4.53967 4.61699 4.74692 4.82078 4.84048 4.89787 4.92192 4.93144 5.03187 5.07357 5.11930 5.12101 5.15903 5.19443 5.30705 5.38975 5.39962 5.52665 5.57693 5.88131 6.20821 6.67038 6.73451 7.20486 7.28021 8.81613 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.004564 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.858467 B = 6133.434762 C = 7129.633987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.101 3.899 5 N -0.645 5.645 6 C 0.538 3.462 7 O -0.573 6.573 8 C -0.107 4.107 9 C 0.010 3.990 10 C -0.530 4.530 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.263 1.263 18 C 0.133 3.867 19 H 0.100 0.900 20 C 0.086 3.914 21 H 0.050 0.950 22 C -0.137 4.137 23 C -0.151 4.151 24 C 0.044 3.956 25 O -0.372 6.372 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 24.077 12.598 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.182 4.182 4 C -0.021 4.021 5 N -0.381 5.381 6 C 0.330 3.670 7 O -0.452 6.452 8 C -0.146 4.146 9 C -0.028 4.028 10 C -0.568 4.568 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.763 3.237 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.187 1.187 18 C 0.030 3.970 19 H 0.118 0.882 20 C 0.028 3.972 21 H 0.068 0.932 22 C -0.175 4.175 23 C -0.189 4.189 24 C -0.032 4.032 25 O -0.290 6.290 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.484 23.546 12.983 26.892 hybrid contribution -0.031 -1.590 0.401 1.640 sum 0.453 21.956 13.384 25.717 Atomic orbital electron populations 1.21521 0.92246 1.01336 1.02897 1.22198 0.96471 0.95274 0.93779 1.21596 1.00864 0.92641 1.03105 1.23555 1.02585 0.82835 0.93126 1.49777 1.72783 1.03309 1.12267 1.20758 0.74521 0.80093 0.91661 1.90634 1.51935 1.67695 1.34931 1.21391 1.04254 0.95259 0.93731 1.19189 0.96249 0.92247 0.95151 1.21399 1.50210 0.92231 0.92970 0.93313 1.25777 0.94184 0.98782 0.99427 1.70021 1.52120 1.08607 1.27538 0.85836 0.79251 0.78049 0.80613 1.19353 1.20146 1.18716 1.23035 0.99342 0.84901 0.89703 0.88204 1.22573 0.97279 0.85032 0.92341 0.93155 1.22780 1.00890 0.98086 0.95712 1.23185 1.00814 0.97967 0.96905 1.23728 0.98081 0.98810 0.82564 1.88800 1.93897 1.27980 1.18339 0.91815 0.90011 0.94492 0.91241 0.90493 0.91704 0.87412 0.89216 0.88791 0.88652 0.97191 0.97383 0.92301 0.92833 0.92374 0.89423 0.89704 0.92126 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.03 71.98 0.58 -1.74 16 2 C -0.08 -1.36 1.33 -51.76 -0.07 -1.43 16 3 C -0.12 -1.54 9.30 71.98 0.67 -0.87 16 4 C 0.10 1.95 7.54 83.26 0.63 2.58 16 5 N -0.64 -18.26 3.37 -833.00 -2.80 -21.07 16 6 C 0.54 20.31 7.98 87.66 0.70 21.01 16 7 O -0.57 -25.45 13.72 -3.03 -0.04 -25.50 16 8 C -0.11 -4.29 5.47 29.85 0.16 -4.12 16 9 C 0.01 0.49 3.33 29.85 0.10 0.59 16 10 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 11 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 12 C 0.02 0.97 5.47 84.65 0.46 1.44 16 13 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 14 Si 0.94 47.36 27.47 68.60 1.88 49.25 16 15 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.26 -13.24 6.54 99.48 0.65 -12.59 16 18 C 0.13 3.15 2.95 41.78 0.12 3.28 16 19 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 20 C 0.09 2.23 2.21 30.97 0.07 2.30 16 21 H 0.05 1.53 7.21 -2.39 -0.02 1.51 16 22 C -0.14 -3.79 4.84 31.58 0.15 -3.64 16 23 C -0.15 -2.91 7.15 31.89 0.23 -2.68 16 24 C 0.04 0.77 7.72 72.67 0.56 1.33 16 25 O -0.37 -8.21 10.39 -148.98 -1.55 -9.76 16 26 H 0.06 1.28 6.80 -2.39 -0.02 1.27 16 27 H 0.08 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.04 0.85 7.90 -2.39 -0.02 0.83 16 29 H 0.07 0.72 7.89 -2.39 -0.02 0.70 16 30 H 0.08 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.64 7.93 -2.39 -0.02 1.62 16 33 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 34 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 35 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 37 H 0.01 0.41 7.53 -2.38 -0.02 0.40 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.05 1.76 7.71 -2.39 -0.02 1.74 16 40 H 0.06 1.81 7.32 -2.39 -0.02 1.80 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.78 345.87 3.30 -69.48 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.90 Total: 9.73 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.61 Total: -12.91 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.50 Total: -80.29 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.59 Total: -35.26 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.88 Total: 49.25 kcal Total: -72.78 3.30 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.483 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds