Wall clock time and date at job start Tue Mar 31 2020 07:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 113.01609 * 2 1 4 4 C 1.53952 * 113.74208 * 131.66205 * 2 1 3 5 5 N 1.47578 * 86.23773 * 137.90018 * 4 2 1 6 6 C 1.34785 * 134.48820 * 155.43254 * 5 4 2 7 7 O 1.21278 * 119.99489 * 184.94850 * 6 5 4 8 8 C 1.50697 * 120.00236 * 4.94190 * 6 5 4 9 9 C 1.52994 * 109.46846 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46965 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99809 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00162 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99855 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47124 * 89.99757 * 14 12 10 16 16 H 1.48497 * 109.47297 * 209.99831 * 14 12 10 17 17 H 1.48501 * 109.47388 * 330.00041 * 14 12 10 18 18 C 1.47805 * 90.92844 * 335.45726 * 5 4 2 19 19 H 1.08996 * 113.66933 * 270.24020 * 18 5 4 20 20 C 1.53000 * 113.83817 * 138.87369 * 18 5 4 21 21 H 1.09004 * 109.82299 * 317.00508 * 20 18 5 22 22 C 1.54380 * 109.83138 * 196.02436 * 20 18 5 23 23 C 1.55313 * 102.25010 * 219.12891 * 22 20 18 24 24 C 1.54949 * 100.93975 * 34.13630 * 23 22 20 25 25 O 1.43233 * 109.82768 * 77.88810 * 20 18 5 26 26 H 1.09000 * 109.47371 * 307.83974 * 1 2 3 27 27 H 1.09004 * 109.47238 * 67.84854 * 1 2 3 28 28 H 1.09006 * 109.47394 * 187.84441 * 1 2 3 29 29 H 1.09000 * 109.46780 * 172.15780 * 3 2 1 30 30 H 1.09001 * 109.46730 * 292.15277 * 3 2 1 31 31 H 1.08989 * 109.47148 * 52.15715 * 3 2 1 32 32 H 1.09002 * 113.76677 * 252.25617 * 4 2 1 33 33 H 1.08995 * 113.77029 * 23.53711 * 4 2 1 34 34 H 1.08993 * 109.47440 * 300.00805 * 8 6 5 35 35 H 1.09003 * 109.46434 * 60.00554 * 8 6 5 36 36 H 1.08999 * 109.47735 * 299.99783 * 9 8 6 37 37 H 1.08990 * 109.47413 * 60.00426 * 9 8 6 38 38 H 0.96997 * 119.99707 * 179.97438 * 13 12 10 39 39 H 1.08996 * 110.84808 * 337.32132 * 22 20 18 40 40 H 1.09000 * 110.84584 * 100.93986 * 22 20 18 41 41 H 1.08998 * 111.12193 * 276.21425 * 23 22 20 42 42 H 1.08993 * 111.12305 * 152.05417 * 23 22 20 43 43 H 1.09004 * 110.30647 * 204.63989 * 24 23 22 44 44 H 1.08991 * 110.39499 * 82.51412 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1282 1.4083 0.0000 4 6 2.1498 -0.9368 1.0528 5 7 3.1109 -1.3230 0.0017 6 6 4.3618 -1.8251 0.0038 7 8 4.9596 -1.9679 -1.0417 8 6 5.0174 -2.2091 1.3053 9 6 6.4228 -2.7468 1.0291 10 6 7.0783 -3.1313 2.3305 11 1 6.5457 -3.0044 3.2616 12 6 8.3581 -3.6441 2.3328 13 7 8.9302 -3.9792 3.4686 14 14 9.2794 -3.8629 0.7227 15 1 10.0421 -2.6260 0.4168 16 1 10.2187 -5.0070 0.8412 17 1 8.3100 -4.1295 -0.3702 18 6 2.1498 -0.9368 -1.0527 19 1 1.4903 -1.7476 -1.3619 20 6 2.7887 -0.2015 -2.2326 21 1 3.5066 0.5323 -1.8659 22 6 1.6956 0.5029 -3.0647 23 6 2.1911 0.2759 -4.5191 24 6 2.8424 -1.1244 -4.3927 25 8 3.4483 -1.1400 -3.0903 26 1 -0.3634 0.6304 0.8116 27 1 -0.3634 0.3875 -0.9518 28 1 -0.3634 -1.0181 0.1403 29 1 3.2072 1.3445 0.1402 30 1 1.9135 1.8941 -0.9518 31 1 1.6900 1.9891 0.8115 32 1 2.6049 -0.4129 1.8933 33 1 1.4895 -1.7464 1.3635 34 1 5.0840 -1.3334 1.9508 35 1 4.4236 -2.9792 1.7978 36 1 6.3566 -3.6225 0.3835 37 1 7.0163 -1.9765 0.5368 38 1 9.8305 -4.3403 3.4701 39 1 0.7251 0.0325 -2.9076 40 1 1.6549 1.5666 -2.8303 41 1 2.9271 1.0272 -4.8050 42 1 1.3567 0.2593 -5.2201 43 1 3.6003 -1.2601 -5.1642 44 1 2.0843 -1.9039 -4.4667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:29 Heat of formation + Delta-G solvation = -59.040077 kcal Electronic energy + Delta-G solvation = -23250.640273 eV Core-core repulsion = 19975.838804 eV Total energy + Delta-G solvation = -3274.801469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00542 -38.81350 -37.66166 -33.37625 -32.68908 -31.87742 -31.14825 -30.15675 -27.75784 -27.15919 -25.63800 -24.93950 -21.98215 -21.48408 -20.76854 -19.06430 -18.37208 -17.09360 -16.66505 -16.26435 -15.89263 -15.51423 -15.26665 -14.41624 -14.23341 -14.03012 -13.84797 -13.83237 -13.31287 -12.91087 -12.62812 -12.49005 -12.46447 -12.34349 -12.05739 -11.86412 -11.51389 -11.36540 -11.32688 -11.17532 -11.14101 -10.96855 -10.88269 -10.57134 -10.06170 -9.94202 -9.70385 -9.39063 -9.12007 -8.88458 -8.45644 -8.32552 -5.97789 -3.95870 3.02531 3.33627 3.42930 3.48979 3.62177 3.79992 4.13177 4.31955 4.50285 4.56758 4.64159 4.69490 4.79123 4.93161 5.07400 5.08374 5.16520 5.28514 5.34826 5.38076 5.41902 5.47594 5.51647 5.54887 5.56393 5.66863 5.68612 5.72393 5.76546 5.82686 5.93278 6.00222 6.12758 6.17755 6.24695 6.37186 6.80397 7.17072 7.45547 7.52658 7.84476 8.13267 8.56797 8.85362 9.05844 9.65852 11.15138 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.004602 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.141944 B = 6082.796396 C = 7109.435722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.131 4.131 4 C 0.109 3.891 5 N -0.647 5.647 6 C 0.527 3.473 7 O -0.512 6.512 8 C -0.114 4.114 9 C 0.002 3.998 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.260 1.260 18 C 0.132 3.868 19 H 0.087 0.913 20 C 0.083 3.917 21 H 0.084 0.916 22 C -0.147 4.147 23 C -0.156 4.156 24 C 0.043 3.957 25 O -0.344 6.344 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.807 11.991 -11.575 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.014 4.014 5 N -0.385 5.385 6 C 0.318 3.682 7 O -0.385 6.385 8 C -0.154 4.154 9 C -0.036 4.036 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.544 5.544 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C 0.028 3.972 19 H 0.105 0.895 20 C 0.025 3.975 21 H 0.101 0.899 22 C -0.185 4.185 23 C -0.194 4.194 24 C -0.034 4.034 25 O -0.263 6.263 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.871 11.590 -12.002 26.721 hybrid contribution 0.316 -0.164 -0.699 0.784 sum -20.555 11.426 -12.701 26.728 Atomic orbital electron populations 1.21740 0.93151 1.02317 1.02260 1.22457 0.95514 0.95615 0.95889 1.21659 1.01425 0.93622 1.02139 1.23227 0.89592 0.95880 0.92739 1.50251 1.13155 1.66684 1.08424 1.21248 0.79083 0.75157 0.92761 1.90734 1.61826 1.51781 1.34201 1.21604 0.99369 1.01683 0.92763 1.19366 0.90195 0.96517 0.97481 1.21126 0.99875 1.42287 0.92763 0.91022 1.24957 0.97357 0.94702 0.96174 1.69915 1.14756 1.44145 1.25615 0.86803 0.79977 0.77851 0.85005 1.20253 1.21475 1.18462 1.23235 0.88969 0.95114 0.89900 0.89506 1.22873 0.93572 0.90823 0.90255 0.89854 1.23177 0.99171 1.01599 0.94575 1.23275 1.01015 0.98173 0.96900 1.23400 0.97271 0.95732 0.86981 1.88821 1.56030 1.60887 1.20533 0.91821 0.92154 0.92128 0.91779 0.91927 0.91864 0.89841 0.90039 0.90172 0.90061 0.95870 0.96307 0.92782 0.90331 0.89897 0.90437 0.90146 0.90031 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.19 37.15 0.34 -0.53 16 2 C -0.09 -0.85 1.11 -153.57 -0.17 -1.02 16 3 C -0.13 -1.13 7.78 37.16 0.29 -0.84 16 4 C 0.11 1.19 7.72 -2.97 -0.02 1.17 16 5 N -0.65 -10.00 3.36 -169.52 -0.57 -10.57 16 6 C 0.53 10.76 7.98 -10.98 -0.09 10.67 16 7 O -0.51 -12.50 14.75 -12.33 -0.18 -12.68 16 8 C -0.11 -2.43 5.39 -27.89 -0.15 -2.58 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.52 -15.52 9.66 -34.44 -0.33 -15.86 16 11 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.91 -28.72 13.96 55.43 0.77 -27.95 16 14 Si 0.88 23.40 27.47 -169.99 -4.67 18.73 16 15 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 17 H -0.26 -6.99 6.54 56.52 0.37 -6.62 16 18 C 0.13 1.63 3.32 -66.74 -0.22 1.41 16 19 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 20 C 0.08 1.08 2.47 -26.01 -0.06 1.01 16 21 H 0.08 1.21 6.93 -51.93 -0.36 0.85 16 22 C -0.15 -1.25 5.74 -24.78 -0.14 -1.39 16 23 C -0.16 -1.32 7.16 -24.48 -0.18 -1.50 16 24 C 0.04 0.50 7.78 38.19 0.30 0.80 16 25 O -0.34 -5.68 9.43 -53.12 -0.50 -6.18 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.33 7.64 -51.93 -0.40 -0.06 16 28 H 0.06 0.38 8.02 -51.93 -0.42 -0.04 16 29 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 30 H 0.06 0.47 5.80 -51.93 -0.30 0.17 16 31 H 0.06 0.45 8.14 -51.94 -0.42 0.02 16 32 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 37 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 39 H 0.08 0.57 7.34 -51.93 -0.38 0.19 16 40 H 0.08 0.58 6.79 -51.93 -0.35 0.23 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -36.52 344.32 -8.18 -44.71 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -7.59 Total: -4.58 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.63 Total: -6.67 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.20 Total: -38.52 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.68 Total: -18.86 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.67 Total: 18.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.52 -8.18 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.334 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds