Wall clock time and date at job start Tue Mar 31 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 113.40990 * 2 1 4 4 C 1.53493 * 114.20848 * 133.20178 * 2 1 3 5 5 N 1.47063 * 87.98639 * 87.52272 * 4 2 1 6 6 C 1.34772 * 136.06018 * 207.08692 * 5 4 2 7 7 O 1.21281 * 120.00323 * 175.02352 * 6 5 4 8 8 C 1.50700 * 119.99816 * 355.02076 * 6 5 4 9 9 C 1.53000 * 109.47158 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47158 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00375 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00264 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46822 * 179.97438 * 14 12 10 16 16 H 1.48488 * 109.47092 * 300.00080 * 14 12 10 17 17 H 1.48505 * 109.46921 * 60.00313 * 14 12 10 18 18 C 1.47068 * 87.88441 * 27.34252 * 5 4 2 19 19 H 1.08995 * 113.46954 * 87.43798 * 18 5 4 20 20 C 1.52998 * 113.46716 * 217.88093 * 18 5 4 21 21 H 1.09006 * 110.27924 * 57.87482 * 20 18 5 22 22 C 1.54947 * 110.31082 * 180.02562 * 20 18 5 23 23 C 1.55303 * 100.94435 * 155.35756 * 22 20 18 24 24 C 1.54377 * 102.25376 * 325.86681 * 23 22 20 25 25 O 1.43238 * 107.58730 * 21.35783 * 24 23 22 26 26 H 1.08994 * 109.47456 * 306.30005 * 1 2 3 27 27 H 1.08997 * 109.47208 * 66.30487 * 1 2 3 28 28 H 1.09008 * 109.46836 * 186.30284 * 1 2 3 29 29 H 1.09001 * 109.47476 * 173.69561 * 3 2 1 30 30 H 1.08999 * 109.47607 * 293.69704 * 3 2 1 31 31 H 1.09003 * 109.47326 * 53.69836 * 3 2 1 32 32 H 1.09000 * 113.46583 * 332.74342 * 4 2 1 33 33 H 1.09002 * 113.52243 * 202.30879 * 4 2 1 34 34 H 1.08997 * 109.47071 * 60.00377 * 8 6 5 35 35 H 1.08999 * 109.47103 * 299.99931 * 8 6 5 36 36 H 1.09003 * 109.47172 * 60.00069 * 9 8 6 37 37 H 1.09003 * 109.47511 * 300.00227 * 9 8 6 38 38 H 0.97007 * 119.99839 * 359.97438 * 13 12 10 39 39 H 1.08999 * 111.12701 * 273.27784 * 22 20 18 40 40 H 1.09001 * 111.12440 * 37.44059 * 22 20 18 41 41 H 1.09002 * 110.85226 * 207.67542 * 23 22 20 42 42 H 1.09004 * 111.02423 * 84.13254 * 23 22 20 43 43 H 1.08997 * 109.83527 * 261.84070 * 24 23 22 44 44 H 1.09000 * 109.90830 * 140.90965 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1594 -0.9584 1.0205 5 7 2.0803 -2.0143 -0.0001 6 6 1.9801 -3.3583 -0.0002 7 8 1.8438 -3.9562 -1.0465 8 6 2.0376 -4.1182 1.2999 9 6 1.9008 -5.6164 1.0214 10 6 1.9577 -6.3763 2.3216 11 1 2.0788 -5.8439 3.2534 12 6 1.8551 -7.7512 2.3215 13 7 1.7071 -8.3996 1.1869 14 14 1.9263 -8.6932 3.9331 15 1 1.7934 -10.1474 3.6627 16 1 3.2251 -8.4304 4.6031 17 1 0.8161 -8.2507 4.8146 18 6 2.1651 -0.9587 -1.0206 19 1 3.1883 -0.6935 -1.2868 20 6 1.2838 -1.2212 -2.2434 21 1 0.2421 -1.3311 -1.9417 22 6 1.4293 -0.0685 -3.2686 23 6 1.0376 -0.7935 -4.5850 24 6 1.5846 -2.2179 -4.3498 25 8 1.7300 -2.3978 -2.9362 26 1 -0.3634 0.6083 0.8282 27 1 -0.3633 0.4130 -0.9410 28 1 -0.3633 -1.0215 0.1128 29 1 3.2196 1.3317 0.1128 30 1 1.9033 1.9017 -0.9410 31 1 1.7239 1.9793 0.8282 32 1 1.5267 -1.1451 1.8882 33 1 3.1811 -0.6939 1.2931 34 1 1.2227 -3.7935 1.9469 35 1 2.9910 -3.9252 1.7917 36 1 2.7155 -5.9415 0.3742 37 1 0.9472 -5.8091 0.5298 38 1 1.6698 -7.9104 0.3501 39 1 0.7375 0.7441 -3.0469 40 1 2.4568 0.2930 -3.3100 41 1 1.5227 -0.3285 -5.4432 42 1 -0.0445 -0.8103 -4.7151 43 1 2.5530 -2.3274 -4.8380 44 1 0.8855 -2.9541 -4.7463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:33 Heat of formation + Delta-G solvation = -61.473439 kcal Electronic energy + Delta-G solvation = -23239.315566 eV Core-core repulsion = 19964.408579 eV Total energy + Delta-G solvation = -3274.906987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04248 -38.74958 -37.65339 -33.67031 -32.58402 -31.89143 -30.78423 -30.02816 -27.78545 -26.86243 -25.43332 -24.43722 -21.92915 -21.53315 -21.20424 -19.19872 -18.34441 -16.94508 -16.58742 -16.22753 -15.80095 -15.52760 -15.04470 -14.54337 -14.32821 -13.89533 -13.79663 -13.64323 -13.30071 -12.89826 -12.62868 -12.43499 -12.31248 -12.02607 -11.99203 -11.78872 -11.58217 -11.45607 -11.33733 -11.22597 -11.04842 -10.92904 -10.76511 -10.27370 -10.08376 -10.01034 -9.83444 -9.25779 -8.93737 -8.46557 -8.31056 -8.21187 -6.25502 -3.94963 3.08089 3.39265 3.48563 3.51533 3.70271 3.82179 4.12336 4.37348 4.54799 4.61264 4.67641 4.73857 4.83444 4.96314 5.10124 5.14525 5.22179 5.31928 5.36193 5.46178 5.49705 5.50750 5.52188 5.55685 5.64000 5.69743 5.72168 5.77103 5.82443 5.90133 5.93727 6.01629 6.14571 6.20225 6.26594 6.38746 6.86621 7.27394 7.61273 7.67027 8.19778 8.28078 8.57150 8.89265 9.01199 9.78639 11.15437 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.004239 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.105755 B = 6603.753807 C = 7585.525123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.096 4.096 3 C -0.133 4.133 4 C 0.107 3.893 5 N -0.647 5.647 6 C 0.531 3.469 7 O -0.500 6.500 8 C -0.114 4.114 9 C 0.026 3.974 10 C -0.607 4.607 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 1.070 2.930 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.289 1.289 18 C 0.140 3.860 19 H 0.088 0.912 20 C 0.076 3.924 21 H 0.074 0.926 22 C -0.148 4.148 23 C -0.155 4.155 24 C 0.044 3.956 25 O -0.337 6.337 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.272 0.728 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 24.463 -6.076 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.017 4.017 5 N -0.386 5.386 6 C 0.322 3.678 7 O -0.372 6.372 8 C -0.154 4.154 9 C -0.012 4.012 10 C -0.645 4.645 11 H 0.066 0.934 12 C -0.189 4.189 13 N -0.547 5.547 14 Si 0.898 3.102 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 C 0.036 3.964 19 H 0.105 0.895 20 C 0.018 3.982 21 H 0.092 0.908 22 C -0.186 4.186 23 C -0.192 4.192 24 C -0.033 4.033 25 O -0.256 6.256 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.927 22.089 -5.907 22.884 hybrid contribution 0.127 1.837 -0.765 1.994 sum -0.800 23.925 -6.672 24.851 Atomic orbital electron populations 1.21537 0.92116 1.02743 1.01927 1.22335 0.96650 0.94241 0.96478 1.21655 1.00649 0.94499 1.02317 1.23010 1.00484 0.84851 0.93378 1.49871 1.75754 1.04079 1.08913 1.21165 0.75189 0.78673 0.92816 1.90758 1.46617 1.65872 1.33938 1.21656 1.02217 0.98834 0.92664 1.19012 0.97192 0.87758 0.97230 1.22032 1.55551 0.94163 0.92796 0.93390 1.25838 0.93912 0.95316 1.03872 1.70727 1.45684 1.39521 0.98803 0.83543 0.76352 0.76172 0.74094 1.20780 1.21512 1.21516 1.22864 0.98403 0.85703 0.89444 0.89471 1.23201 0.98025 0.85050 0.91971 0.90832 1.23268 1.02565 0.98255 0.94492 1.23120 1.01791 0.96083 0.98234 1.23119 1.00275 0.95656 0.84221 1.88894 1.85594 1.35596 1.15470 0.91812 0.92090 0.91756 0.92098 0.92062 0.91794 0.90298 0.90178 0.90652 0.90563 0.96774 0.96769 0.91716 0.90067 0.90375 0.90321 0.90737 0.91899 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 7.78 37.16 0.29 -0.88 16 2 C -0.10 -0.91 1.44 -153.86 -0.22 -1.13 16 3 C -0.13 -0.88 9.25 37.16 0.34 -0.53 16 4 C 0.11 1.22 7.56 -8.51 -0.06 1.16 16 5 N -0.65 -10.52 3.33 -177.21 -0.59 -11.11 16 6 C 0.53 11.42 8.00 -10.99 -0.09 11.33 16 7 O -0.50 -12.77 13.95 -17.03 -0.24 -13.01 16 8 C -0.11 -2.55 5.47 -27.88 -0.15 -2.70 16 9 C 0.03 0.73 3.57 -27.88 -0.10 0.63 16 10 C -0.61 -18.15 9.11 -34.44 -0.31 -18.46 16 11 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 12 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 13 N -0.91 -29.66 13.65 55.43 0.76 -28.91 16 14 Si 1.07 26.15 29.90 -169.99 -5.08 21.06 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.14 1.81 3.22 -72.27 -0.23 1.58 16 19 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 20 C 0.08 1.03 2.74 -25.70 -0.07 0.96 16 21 H 0.07 1.06 6.25 -51.93 -0.32 0.73 16 22 C -0.15 -1.38 6.57 -24.48 -0.16 -1.54 16 23 C -0.15 -1.47 7.02 -24.79 -0.17 -1.64 16 24 C 0.04 0.59 7.79 37.88 0.30 0.89 16 25 O -0.34 -6.01 8.39 -57.82 -0.48 -6.49 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 28 H 0.06 0.77 7.69 -51.92 -0.40 0.37 16 29 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 33 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 37 H 0.01 0.43 7.97 -51.93 -0.41 0.01 16 38 H 0.27 9.04 7.22 -40.82 -0.29 8.75 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -37.04 349.61 -8.88 -45.92 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.76 Total: -2.73 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.75 Total: -10.00 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.17 Total: -40.02 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.72 Total: -19.50 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.04 -8.88 -45.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.556 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds