Wall clock time and date at job start Tue Mar 31 2020 07:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 113.40990 * 2 1 4 4 C 1.53493 * 114.20848 * 133.20178 * 2 1 3 5 5 N 1.47063 * 87.98639 * 87.52272 * 4 2 1 6 6 C 1.34772 * 136.06018 * 207.08692 * 5 4 2 7 7 O 1.21281 * 120.00323 * 175.02352 * 6 5 4 8 8 C 1.50700 * 119.99816 * 355.02076 * 6 5 4 9 9 C 1.53000 * 109.47158 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47158 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00375 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00264 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46822 * 179.97438 * 14 12 10 16 16 H 1.48488 * 109.47092 * 300.00080 * 14 12 10 17 17 H 1.48505 * 109.46921 * 60.00313 * 14 12 10 18 18 C 1.47068 * 87.88441 * 27.34252 * 5 4 2 19 19 H 1.08995 * 113.46954 * 87.43798 * 18 5 4 20 20 C 1.52998 * 113.46716 * 217.88093 * 18 5 4 21 21 H 1.09006 * 110.27924 * 57.87482 * 20 18 5 22 22 C 1.54947 * 110.31082 * 180.02562 * 20 18 5 23 23 C 1.55303 * 100.94435 * 155.35756 * 22 20 18 24 24 C 1.54377 * 102.25376 * 325.86681 * 23 22 20 25 25 O 1.43238 * 107.58730 * 21.35783 * 24 23 22 26 26 H 1.08994 * 109.47456 * 306.30005 * 1 2 3 27 27 H 1.08997 * 109.47208 * 66.30487 * 1 2 3 28 28 H 1.09008 * 109.46836 * 186.30284 * 1 2 3 29 29 H 1.09001 * 109.47476 * 173.69561 * 3 2 1 30 30 H 1.08999 * 109.47607 * 293.69704 * 3 2 1 31 31 H 1.09003 * 109.47326 * 53.69836 * 3 2 1 32 32 H 1.09000 * 113.46583 * 332.74342 * 4 2 1 33 33 H 1.09002 * 113.52243 * 202.30879 * 4 2 1 34 34 H 1.08997 * 109.47071 * 60.00377 * 8 6 5 35 35 H 1.08999 * 109.47103 * 299.99931 * 8 6 5 36 36 H 1.09003 * 109.47172 * 60.00069 * 9 8 6 37 37 H 1.09003 * 109.47511 * 300.00227 * 9 8 6 38 38 H 0.97007 * 119.99839 * 359.97438 * 13 12 10 39 39 H 1.08999 * 111.12701 * 273.27784 * 22 20 18 40 40 H 1.09001 * 111.12440 * 37.44059 * 22 20 18 41 41 H 1.09002 * 110.85226 * 207.67542 * 23 22 20 42 42 H 1.09004 * 111.02423 * 84.13254 * 23 22 20 43 43 H 1.08997 * 109.83527 * 261.84070 * 24 23 22 44 44 H 1.09000 * 109.90830 * 140.90965 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1594 -0.9584 1.0205 5 7 2.0803 -2.0143 -0.0001 6 6 1.9801 -3.3583 -0.0002 7 8 1.8438 -3.9562 -1.0465 8 6 2.0376 -4.1182 1.2999 9 6 1.9008 -5.6164 1.0214 10 6 1.9577 -6.3763 2.3216 11 1 2.0788 -5.8439 3.2534 12 6 1.8551 -7.7512 2.3215 13 7 1.7071 -8.3996 1.1869 14 14 1.9263 -8.6932 3.9331 15 1 1.7934 -10.1474 3.6627 16 1 3.2251 -8.4304 4.6031 17 1 0.8161 -8.2507 4.8146 18 6 2.1651 -0.9587 -1.0206 19 1 3.1883 -0.6935 -1.2868 20 6 1.2838 -1.2212 -2.2434 21 1 0.2421 -1.3311 -1.9417 22 6 1.4293 -0.0685 -3.2686 23 6 1.0376 -0.7935 -4.5850 24 6 1.5846 -2.2179 -4.3498 25 8 1.7300 -2.3978 -2.9362 26 1 -0.3634 0.6083 0.8282 27 1 -0.3633 0.4130 -0.9410 28 1 -0.3633 -1.0215 0.1128 29 1 3.2196 1.3317 0.1128 30 1 1.9033 1.9017 -0.9410 31 1 1.7239 1.9793 0.8282 32 1 1.5267 -1.1451 1.8882 33 1 3.1811 -0.6939 1.2931 34 1 1.2227 -3.7935 1.9469 35 1 2.9910 -3.9252 1.7917 36 1 2.7155 -5.9415 0.3742 37 1 0.9472 -5.8091 0.5298 38 1 1.6698 -7.9104 0.3501 39 1 0.7375 0.7441 -3.0469 40 1 2.4568 0.2930 -3.3100 41 1 1.5227 -0.3285 -5.4432 42 1 -0.0445 -0.8103 -4.7151 43 1 2.5530 -2.3274 -4.8380 44 1 0.8855 -2.9541 -4.7463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408237154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:32 Heat of formation + Delta-G solvation = -85.759990 kcal Electronic energy + Delta-G solvation = -23240.368710 eV Core-core repulsion = 19964.408579 eV Total energy + Delta-G solvation = -3275.960131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12511 -39.92630 -39.15969 -35.94660 -33.72223 -32.96705 -32.60879 -31.09261 -28.61115 -28.17059 -26.64801 -26.13814 -23.74659 -22.56847 -22.30484 -20.45897 -19.41608 -19.03061 -17.80205 -17.43514 -17.13056 -16.90170 -16.35648 -15.88944 -15.62799 -15.33857 -15.05619 -14.91398 -14.44620 -14.14879 -14.09490 -13.74550 -13.57441 -13.45835 -12.96729 -12.86617 -12.68494 -12.63348 -12.40816 -12.17799 -12.13877 -12.08843 -12.06148 -11.99628 -11.87393 -11.73829 -11.15957 -10.85740 -10.58289 -10.52350 -10.36217 -9.62090 -8.73314 -6.45142 1.51673 1.62736 1.69062 1.81463 1.88637 2.57849 2.88015 3.13818 3.22169 3.51253 3.64227 3.69267 3.87758 3.97042 4.07114 4.15994 4.21904 4.24296 4.26480 4.33246 4.42771 4.55615 4.59101 4.76115 4.76819 4.78872 4.82017 4.84806 4.92425 4.93438 5.02023 5.08965 5.12810 5.15512 5.22933 5.27018 5.31784 5.34107 5.52112 5.89654 6.12603 6.25469 6.46337 6.80731 7.31881 7.41775 8.66090 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.004239 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.105755 B = 6603.753807 C = 7585.525123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 C -0.128 4.128 4 C 0.097 3.903 5 N -0.652 5.652 6 C 0.526 3.474 7 O -0.558 6.558 8 C -0.102 4.102 9 C 0.032 3.968 10 C -0.620 4.620 11 H 0.066 0.934 12 C -0.045 4.045 13 N -0.938 5.938 14 Si 1.127 2.873 15 H -0.285 1.285 16 H -0.263 1.263 17 H -0.262 1.262 18 C 0.130 3.870 19 H 0.096 0.904 20 C 0.064 3.936 21 H 0.056 0.944 22 C -0.133 4.133 23 C -0.144 4.144 24 C 0.031 3.969 25 O -0.389 6.389 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.093 0.907 36 H -0.025 1.025 37 H -0.024 1.024 38 H 0.249 0.751 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 28.316 -4.253 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.185 4.185 4 C -0.025 4.025 5 N -0.388 5.388 6 C 0.316 3.684 7 O -0.435 6.435 8 C -0.142 4.142 9 C -0.005 4.005 10 C -0.657 4.657 11 H 0.084 0.916 12 C -0.241 4.241 13 N -0.575 5.575 14 Si 0.946 3.054 15 H -0.211 1.211 16 H -0.188 1.188 17 H -0.187 1.187 18 C 0.027 3.973 19 H 0.114 0.886 20 C 0.006 3.994 21 H 0.074 0.926 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.046 4.046 25 O -0.308 6.308 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.111 0.889 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.058 0.942 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.597 26.054 -4.070 26.377 hybrid contribution 0.021 0.699 -1.374 1.542 sum -0.576 26.753 -5.443 27.307 Atomic orbital electron populations 1.21570 0.91985 1.01067 1.03744 1.22255 0.96550 0.95246 0.92977 1.21664 1.00917 0.91900 1.04020 1.23475 1.02410 0.83245 0.93325 1.49792 1.73200 1.03173 1.12640 1.20805 0.75465 0.80709 0.91402 1.90734 1.49669 1.67845 1.35263 1.21393 1.03656 0.95058 0.94059 1.18813 0.93623 0.92191 0.95892 1.22474 1.54758 0.94839 0.93670 0.91596 1.27773 0.92388 0.97304 1.06683 1.70897 1.48189 1.39486 0.98909 0.82856 0.78390 0.74376 0.69756 1.21104 1.18764 1.18725 1.23310 0.99374 0.85133 0.89531 0.88589 1.23393 0.97062 0.85761 0.93166 0.92609 1.23256 1.04223 0.97204 0.92375 1.23099 1.02260 0.93286 0.99469 1.23301 1.00395 0.98215 0.82672 1.88863 1.85910 1.38436 1.17641 0.89441 0.90658 0.95368 0.91402 0.90444 0.89984 0.89625 0.87779 0.88944 0.88908 1.00646 1.00586 0.94160 0.87038 0.89035 0.87631 0.90125 0.91697 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.78 71.98 0.56 -1.48 16 2 C -0.07 -1.10 1.44 -51.76 -0.07 -1.18 16 3 C -0.13 -1.03 9.25 71.98 0.67 -0.36 16 4 C 0.10 2.00 7.56 83.18 0.63 2.63 16 5 N -0.65 -21.22 3.33 -832.97 -2.78 -23.99 16 6 C 0.53 23.78 8.00 87.66 0.70 24.48 16 7 O -0.56 -30.89 13.95 18.57 0.26 -30.63 16 8 C -0.10 -4.71 5.47 29.85 0.16 -4.55 16 9 C 0.03 1.95 3.57 29.85 0.11 2.06 16 10 C -0.62 -37.81 9.11 25.60 0.23 -37.58 16 11 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 12 C -0.05 -2.79 5.46 84.65 0.46 -2.33 16 13 N -0.94 -63.68 13.65 21.45 0.29 -63.38 16 14 Si 1.13 52.11 29.90 68.60 2.05 54.16 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 C 0.13 3.20 3.22 41.87 0.13 3.33 16 19 H 0.10 2.21 8.08 -2.39 -0.02 2.19 16 20 C 0.06 1.73 2.74 31.26 0.09 1.82 16 21 H 0.06 1.65 6.25 -2.38 -0.01 1.64 16 22 C -0.13 -2.13 6.57 32.05 0.21 -1.92 16 23 C -0.14 -2.49 7.02 31.85 0.22 -2.27 16 24 C 0.03 0.86 7.79 72.45 0.56 1.43 16 25 O -0.39 -14.70 8.39 -127.38 -1.07 -15.77 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.01 7.53 -2.39 -0.02 0.99 16 28 H 0.03 0.66 7.69 -2.38 -0.02 0.64 16 29 H 0.07 0.51 8.04 -2.39 -0.02 0.49 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.10 1.70 8.03 -2.39 -0.02 1.69 16 34 H 0.09 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.09 3.93 8.14 -2.39 -0.02 3.91 16 36 H -0.02 -1.66 7.97 -2.39 -0.02 -1.68 16 37 H -0.02 -1.62 7.97 -2.39 -0.02 -1.64 16 38 H 0.25 17.76 7.22 -92.70 -0.67 17.09 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -88.80 349.61 4.47 -84.33 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.05 Total: 11.19 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 4.67 Total: -15.91 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.48 Total: -87.38 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.81 Total: -46.40 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Total: -88.80 4.47 -84.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.430 kcal (2) G-P(sol) polarization free energy of solvation -88.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds