Wall clock time and date at job start Tue Mar 31 2020 07:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 112.93929 * 2 1 4 4 C 1.53905 * 113.65446 * 131.37370 * 2 1 3 5 5 H 1.08997 * 113.71205 * 333.82741 * 4 2 1 6 6 N 1.46499 * 113.71216 * 202.71179 * 4 2 1 7 7 C 1.34784 * 119.99893 * 154.99901 * 6 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 4 9 9 C 1.50694 * 119.99988 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.53355 * 86.47415 * 88.32141 * 4 2 1 20 20 H 1.08995 * 111.94578 * 273.64825 * 19 4 2 21 21 C 1.51028 * 115.03260 * 145.36135 * 19 4 2 22 22 C 1.51904 * 113.42382 * 289.51504 * 21 19 4 23 23 C 1.52661 * 110.74811 * 315.45899 * 22 21 19 24 24 O 1.43928 * 109.61001 * 61.15824 * 23 22 21 25 25 C 1.42844 * 113.17854 * 296.67662 * 24 23 22 26 26 H 1.09005 * 113.09947 * 274.43397 * 25 24 23 27 27 H 1.09004 * 109.46871 * 288.62489 * 1 2 3 28 28 H 1.09001 * 109.47113 * 48.62879 * 1 2 3 29 29 H 1.09004 * 109.47194 * 168.62950 * 1 2 3 30 30 H 1.09003 * 109.47433 * 191.37337 * 3 2 1 31 31 H 1.09000 * 109.47285 * 311.37567 * 3 2 1 32 32 H 1.08995 * 109.46906 * 71.37624 * 3 2 1 33 33 H 0.96991 * 120.00466 * 335.00138 * 6 4 2 34 34 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 35 35 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 36 36 H 1.09007 * 109.46922 * 59.99702 * 10 9 7 37 37 H 1.09003 * 109.46836 * 300.00457 * 10 9 7 38 38 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 39 39 H 1.09003 * 108.69179 * 50.53872 * 21 19 4 40 40 H 1.08998 * 108.69356 * 168.49299 * 21 19 4 41 41 H 1.09002 * 109.21709 * 75.78041 * 22 21 19 42 42 H 1.08999 * 109.22022 * 195.12763 * 22 21 19 43 43 H 1.09008 * 109.55830 * 181.12047 * 23 22 21 44 44 H 1.09000 * 109.56379 * 301.34223 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1475 -0.9318 1.0579 5 1 1.5030 -1.1044 1.9198 6 7 3.5172 -0.5717 1.4326 7 6 4.0020 -0.9289 2.6385 8 8 3.3043 -1.5487 3.4131 9 6 5.4107 -0.5580 3.0242 10 6 5.7078 -1.0782 4.4320 11 6 7.1167 -0.7079 4.8175 12 1 7.7381 -0.1563 4.1276 13 6 7.6127 -1.0734 6.0511 14 7 6.8558 -1.7447 6.8914 15 14 9.3594 -0.6149 6.5285 16 1 10.2868 -1.6973 6.1118 17 1 9.7411 0.6513 5.8532 18 1 9.4389 -0.4344 8.0004 19 6 2.0686 -2.0347 -0.0047 20 1 1.0982 -2.5311 -0.0053 21 6 3.1969 -3.0381 0.0306 22 6 4.5287 -2.4653 -0.4227 23 6 4.3543 -1.6241 -1.6847 24 8 3.4705 -0.5214 -1.4118 25 6 2.1488 -0.9337 -1.0604 26 1 1.5097 -1.1049 -1.9267 27 1 -0.3633 0.3282 0.9739 28 1 -0.3633 0.6792 -0.7712 29 1 -0.3634 -1.0075 -0.2026 30 1 3.1958 1.3510 -0.2027 31 1 1.6424 2.0084 -0.7711 32 1 1.9657 1.8715 0.9738 33 1 4.0752 -0.0763 0.8130 34 1 5.5183 0.5266 3.0078 35 1 6.1103 -1.0033 2.3168 36 1 5.6000 -2.1628 4.4488 37 1 5.0081 -0.6326 5.1392 38 1 7.2049 -2.0021 7.7591 39 1 3.3042 -3.4072 1.0506 40 1 2.9389 -3.8767 -0.6160 41 1 4.9395 -1.8409 0.3708 42 1 5.2194 -3.2829 -0.6289 43 1 5.3231 -1.2396 -2.0037 44 1 3.9267 -2.2388 -2.4768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:18 Heat of formation + Delta-G solvation = -76.088849 kcal Electronic energy + Delta-G solvation = -23596.631095 eV Core-core repulsion = 20321.090336 eV Total energy + Delta-G solvation = -3275.540759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59515 -38.53811 -36.53106 -34.00590 -33.41886 -32.84823 -30.90303 -30.37031 -27.56013 -26.50491 -25.61859 -24.46714 -23.08459 -21.45608 -19.68447 -19.48035 -18.71451 -16.98783 -16.34778 -16.03099 -15.89818 -15.51864 -15.10094 -14.83387 -14.40217 -14.21523 -13.94017 -13.64056 -13.23581 -12.88038 -12.79751 -12.62567 -12.31648 -12.22420 -12.13875 -11.65280 -11.35179 -11.24946 -11.14931 -11.05235 -10.91523 -10.68604 -10.57589 -10.54390 -10.03371 -9.92038 -9.63268 -9.37897 -9.13481 -8.95553 -8.49212 -8.29581 -5.94189 -3.98351 3.28601 3.34496 3.39319 3.41272 3.43829 3.66767 4.21834 4.42114 4.49645 4.57917 4.75869 4.87020 4.88933 4.99399 5.17925 5.21299 5.33706 5.40792 5.45802 5.50458 5.51279 5.56606 5.66379 5.73756 5.82399 5.84950 5.91354 5.99822 6.01121 6.09965 6.21759 6.26680 6.29895 6.34079 6.34913 6.87805 6.93839 7.05583 7.76757 7.89047 8.03203 8.09681 8.41504 8.86898 9.10582 9.65062 11.16766 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.004131 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.562809 B = 6776.077871 C = 7055.494986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.130 4.130 4 C 0.140 3.860 5 H 0.100 0.900 6 N -0.716 5.716 7 C 0.510 3.490 8 O -0.536 6.536 9 C -0.130 4.130 10 C 0.039 3.961 11 C -0.526 4.526 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.287 1.287 19 C -0.147 4.147 20 H 0.099 0.901 21 C -0.102 4.102 22 C -0.158 4.158 23 C 0.061 3.939 24 O -0.361 6.361 25 C 0.077 3.923 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 1.952 -20.064 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 C -0.187 4.187 4 C 0.033 3.967 5 H 0.118 0.882 6 N -0.370 5.370 7 C 0.299 3.701 8 O -0.412 6.412 9 C -0.170 4.170 10 C 0.001 3.999 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.212 1.212 19 C -0.167 4.167 20 H 0.117 0.883 21 C -0.139 4.139 22 C -0.196 4.196 23 C -0.015 4.015 24 O -0.280 6.280 25 C 0.018 3.982 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.124 1.620 -19.294 22.330 hybrid contribution 1.123 0.039 -0.011 1.124 sum -10.001 1.659 -19.305 21.805 Atomic orbital electron populations 1.21547 0.91992 1.02119 1.02621 1.22499 0.95804 0.95801 0.95288 1.21511 1.01689 0.94049 1.01442 1.21807 0.85327 0.93361 0.96176 0.88182 1.46010 1.13632 1.59172 1.18190 1.21540 0.90505 0.78004 0.80038 1.90656 1.60305 1.39522 1.50681 1.21872 0.90071 1.02096 1.02982 1.18880 0.96122 0.97055 0.87843 1.21230 0.98396 1.36045 1.00784 0.92638 1.25020 0.97553 0.95211 0.96557 1.70003 1.36124 1.38601 1.08139 0.86603 0.84979 0.78790 0.77642 1.20702 1.19883 1.21235 1.22825 1.00343 0.95870 0.97671 0.88305 1.20528 0.93718 0.97227 1.02447 1.21911 0.97966 1.00654 0.99057 1.22615 0.93931 0.88867 0.96106 1.88145 1.20160 1.30735 1.88947 1.23058 0.84792 0.95172 0.95132 0.90930 0.91521 0.91910 0.92189 0.91254 0.92763 0.92464 0.76012 0.90319 0.90456 0.95903 0.95860 0.92991 0.90974 0.92647 0.90099 0.90944 0.88754 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.09 37.16 0.34 -0.70 16 2 C -0.09 -0.95 1.35 -153.40 -0.21 -1.16 16 3 C -0.13 -1.36 8.44 37.16 0.31 -1.04 16 4 C 0.14 1.83 3.65 -67.28 -0.25 1.59 16 5 H 0.10 1.51 7.43 -51.93 -0.39 1.13 16 6 N -0.72 -10.51 2.41 -53.17 -0.13 -10.64 16 7 C 0.51 9.90 7.32 -10.98 -0.08 9.82 16 8 O -0.54 -12.65 15.58 5.56 0.09 -12.56 16 9 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 10 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 11 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 C -0.15 -1.63 3.52 -91.58 -0.32 -1.95 16 20 H 0.10 0.96 7.37 -51.93 -0.38 0.58 16 21 C -0.10 -1.21 5.36 -28.28 -0.15 -1.36 16 22 C -0.16 -1.78 5.52 -27.46 -0.15 -1.93 16 23 C 0.06 0.59 6.78 36.98 0.25 0.84 16 24 O -0.36 -3.94 7.59 -35.23 -0.27 -4.21 16 25 C 0.08 0.78 4.19 -26.21 -0.11 0.67 16 26 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 7.13 -51.93 -0.37 0.07 16 30 H 0.07 0.77 5.61 -51.93 -0.29 0.48 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 5.35 5.31 -40.82 -0.22 5.13 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.02 0.67 8.10 -51.92 -0.42 0.25 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.06 5.50 -51.93 -0.29 0.78 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.02 337.68 -7.94 -40.96 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.39 Total: 2.35 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.05 Total: -10.90 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.61 Total: -37.50 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.18 Total: -16.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.02 -7.94 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.126 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds