Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.46933 * 294.99325 * 17 16 15 19 19 C 1.52999 * 109.47441 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47231 * 60.00037 * 19 18 17 21 21 C 1.52998 * 109.46878 * 300.00308 * 20 19 18 22 22 C 1.53004 * 109.46775 * 175.00133 * 17 16 15 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 29 29 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 30 30 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 31 31 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 32 32 H 1.08997 * 109.47594 * 54.99951 * 17 16 15 33 33 H 1.08997 * 109.47491 * 300.00689 * 18 17 16 34 34 H 1.09005 * 109.47226 * 60.00238 * 18 17 16 35 35 H 1.09005 * 109.46966 * 300.00273 * 19 18 17 36 36 H 1.08997 * 109.47215 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.47291 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.46695 * 60.00349 * 20 19 18 39 39 H 1.08997 * 109.47491 * 299.99553 * 21 20 19 40 40 H 1.08998 * 109.47087 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.46923 * 299.99031 * 22 17 16 42 42 H 1.08992 * 109.47666 * 59.99649 * 22 17 16 43 43 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 44 44 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 6 -0.8681 -6.9351 5.0863 19 6 -1.9168 -7.1504 6.1794 20 6 -2.2038 -8.6464 6.3233 21 6 -2.7310 -9.1944 4.9956 22 6 -1.6827 -8.9790 3.9027 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 0.1879 -5.3004 3.3596 29 1 -1.0946 -5.3215 2.1255 30 1 -0.6840 -7.7370 1.7414 31 1 0.5985 -7.7151 2.9756 32 1 -2.3133 -6.9611 3.4889 33 1 0.0499 -7.4571 5.3561 34 1 -0.6633 -5.8694 4.9838 35 1 -2.8350 -6.6285 5.9098 36 1 -1.5414 -6.7595 7.1251 37 1 -2.9512 -8.7997 7.1017 38 1 -1.2856 -9.1681 6.5929 39 1 -3.6492 -8.6726 4.7260 40 1 -2.9350 -10.2602 5.0979 41 1 -2.0583 -9.3695 2.9569 42 1 -0.7648 -9.5011 4.1725 43 1 2.1758 -4.2745 -0.9513 44 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408299080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = -91.479995 kcal Electronic energy + Delta-G solvation = -22372.392916 eV Core-core repulsion = 19096.184747 eV Total energy + Delta-G solvation = -3276.208169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59930 -38.80363 -37.30724 -33.93239 -33.72409 -32.20007 -30.90221 -29.82316 -28.16381 -25.55865 -25.23043 -23.80951 -22.63452 -20.89834 -19.83446 -19.79709 -18.14993 -17.38547 -16.32423 -15.55808 -15.41320 -15.26691 -14.82645 -14.41920 -14.23169 -14.13972 -14.03218 -13.50094 -12.97927 -12.77621 -12.41436 -12.37898 -12.18496 -11.87286 -11.77131 -11.55681 -11.50374 -11.22879 -11.12119 -11.05871 -11.03315 -10.73065 -10.54257 -10.47502 -10.28594 -10.11379 -9.99133 -9.59246 -9.14021 -8.75823 -8.39601 -7.79851 -6.39553 -4.49772 3.15816 3.21704 3.23719 3.28514 3.61659 4.18267 4.54980 4.60139 4.64558 4.84051 4.99911 5.06704 5.07118 5.28302 5.39012 5.41071 5.42063 5.45652 5.53756 5.58744 5.66229 5.81755 5.87477 5.90752 5.95779 5.99534 6.03424 6.07004 6.14157 6.18697 6.23039 6.27108 6.39100 6.42656 6.51574 6.54120 6.66147 6.71565 7.11093 7.62962 7.82655 8.52823 8.55273 8.82914 9.21385 9.46431 10.66988 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.003311 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.063042 B = 8455.627391 C = 8980.337776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.077 3.923 12 N -0.633 5.633 13 C 0.526 3.474 14 O -0.569 6.569 15 C -0.134 4.134 16 C -0.096 4.096 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.114 4.114 23 C 0.110 3.890 24 H 0.274 0.726 25 H 0.392 0.608 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -10.516 11.137 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.046 4.046 12 N -0.367 5.367 13 C 0.316 3.684 14 O -0.449 6.449 15 C -0.173 4.173 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.012 4.012 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.624 -11.635 10.766 16.513 hybrid contribution 0.108 1.530 0.295 1.562 sum -4.516 -10.105 11.062 15.648 Atomic orbital electron populations 1.69312 1.06177 1.28247 1.50192 1.25068 0.95024 0.99853 0.93079 0.86385 0.79498 0.81632 0.78978 1.21004 1.19906 1.19865 1.21491 0.93904 0.90055 1.52088 0.91138 1.19837 0.85442 0.91164 0.83854 1.86060 1.45202 1.50489 1.56800 1.24293 0.99908 0.77906 1.02475 1.50200 1.41901 1.04798 1.39796 1.20306 0.83360 0.81444 0.83335 1.90618 1.56789 1.40286 1.57254 1.21619 0.99038 0.98549 0.98129 1.21361 0.99126 0.94365 0.98539 1.21199 0.98710 0.95902 0.94795 1.21662 0.98335 1.01179 0.94353 1.21539 0.99386 0.96132 0.98682 1.21536 1.00795 0.96194 0.97163 1.21528 0.98662 1.00367 0.95127 1.21563 0.99004 0.96057 0.98520 1.23430 0.93792 0.92611 0.91394 0.91608 0.75231 0.90122 0.91428 0.89416 0.89407 0.91345 0.91462 0.91168 0.92014 0.91636 0.92053 0.92249 0.92431 0.92160 0.92089 0.92326 0.91983 0.92004 0.91290 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 11.09 55.43 0.61 -21.95 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.43 8.62 -34.44 -0.30 -13.73 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.72 1.44 -90.84 -0.13 5.59 16 10 O -0.57 -14.78 13.48 -35.23 -0.48 -15.25 16 11 C 0.08 1.64 8.01 -2.97 -0.02 1.62 16 12 N -0.63 -13.48 3.61 -178.30 -0.64 -14.13 16 13 C 0.53 10.69 8.06 -10.99 -0.09 10.60 16 14 O -0.57 -13.18 16.71 5.55 0.09 -13.09 16 15 C -0.13 -2.05 5.20 -27.88 -0.15 -2.19 16 16 C -0.10 -1.31 3.97 -26.73 -0.11 -1.42 16 17 C -0.09 -0.95 2.19 -90.62 -0.20 -1.15 16 18 C -0.12 -1.20 4.96 -26.73 -0.13 -1.33 16 19 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 20 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 21 C -0.12 -1.02 5.92 -26.75 -0.16 -1.18 16 22 C -0.11 -1.12 5.20 -26.75 -0.14 -1.26 16 23 C 0.11 2.43 8.22 -2.97 -0.02 2.41 16 24 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 25 H 0.39 10.15 6.46 45.56 0.29 10.44 16 26 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 27 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.21 6.56 -51.93 -0.34 0.87 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 31 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 6.57 -51.93 -0.34 0.34 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -27.70 348.72 -9.14 -36.84 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.11 Total: 10.72 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.86 Total: -2.71 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.03 Total: -36.07 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.38 Total: -28.34 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.70 -9.14 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408299080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.638 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds