Wall clock time and date at job start Tue Mar 31 2020 07:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47264 * 2 1 4 4 C 1.53006 * 109.47072 * 119.99971 * 2 1 3 5 5 C 1.53008 * 109.47045 * 66.04119 * 4 2 1 6 6 C 1.50703 * 112.84857 * 293.61862 * 5 4 2 7 7 O 1.21282 * 120.00009 * 124.13020 * 6 5 4 8 8 N 1.34779 * 119.99594 * 304.12641 * 6 5 4 9 9 C 1.47582 * 134.48823 * 175.09974 * 8 6 5 10 10 C 1.53950 * 86.11580 * 155.35970 * 9 8 6 11 11 O 1.42903 * 113.73621 * 269.14972 * 10 9 8 12 12 C 1.50696 * 113.74000 * 137.95383 * 10 9 8 13 13 H 1.08002 * 120.00170 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99552 * 180.27541 * 12 10 9 15 15 N 1.31515 * 120.00202 * 359.71967 * 14 12 10 16 16 Si 1.86807 * 119.99760 * 179.72076 * 14 12 10 17 17 H 1.48502 * 109.47116 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46779 * 119.99768 * 16 14 12 19 19 H 1.48499 * 109.47206 * 239.99746 * 16 14 12 20 20 C 1.47574 * 134.49526 * 355.09452 * 8 6 5 21 21 C 1.53782 * 113.61240 * 64.81044 * 5 4 2 22 22 C 1.53960 * 87.01723 * 89.22808 * 21 5 4 23 23 C 1.53778 * 113.61299 * 162.41709 * 5 4 2 24 24 H 1.08998 * 109.47097 * 291.67001 * 1 2 3 25 25 H 1.09006 * 109.46927 * 51.66848 * 1 2 3 26 26 H 1.08997 * 109.47425 * 171.66400 * 1 2 3 27 27 H 1.09005 * 109.47254 * 239.99800 * 2 1 3 28 28 H 1.09005 * 109.47255 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47337 * 299.99737 * 3 2 1 30 30 H 1.09000 * 109.47382 * 60.00438 * 3 2 1 31 31 H 1.08995 * 109.46901 * 306.04628 * 4 2 1 32 32 H 1.08996 * 109.47262 * 186.03694 * 4 2 1 33 33 H 1.09002 * 113.77070 * 41.05416 * 9 8 6 34 34 H 1.09002 * 113.76758 * 269.65887 * 9 8 6 35 35 H 0.96698 * 113.99466 * 178.07190 * 11 10 9 36 36 H 0.97002 * 120.00142 * 180.02562 * 15 14 12 37 37 H 1.09007 * 113.76892 * 90.33997 * 20 8 6 38 38 H 1.08997 * 113.77314 * 318.94891 * 20 8 6 39 39 H 1.09003 * 113.61366 * 203.74921 * 21 5 4 40 40 H 1.09005 * 113.61429 * 334.65195 * 21 5 4 41 41 H 1.08994 * 113.53978 * 270.80982 * 22 21 5 42 42 H 1.08999 * 113.66193 * 139.93277 * 22 21 5 43 43 H 1.08995 * 113.61318 * 25.35636 * 23 5 4 44 44 H 1.09004 * 113.61176 * 156.17042 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6577 -2.2010 1.1757 6 6 0.1693 -2.4253 1.2502 7 8 -0.3961 -3.0405 0.3711 8 7 -0.5335 -1.9421 2.2939 9 6 -1.9671 -1.8920 2.6409 10 6 -1.5021 -1.8058 4.1060 11 8 -1.3719 -3.0778 4.7440 12 6 -2.2774 -0.8113 4.9311 13 1 -3.0752 -0.2403 4.4795 14 6 -1.9640 -0.6258 6.2609 15 7 -0.9922 -1.3207 6.8107 16 14 -2.9200 0.6127 7.2817 17 1 -3.9547 1.2587 6.4349 18 1 -3.5751 -0.0833 8.4182 19 1 -1.9905 1.6465 7.8038 20 6 -0.1787 -1.2510 3.5486 21 6 2.3373 -2.9561 0.0212 22 6 3.4901 -3.2497 0.9987 23 6 2.4640 -3.0939 2.1334 24 1 -0.3633 0.3795 0.9550 25 1 -0.3633 0.6374 -0.8062 26 1 -0.3634 -1.0168 -0.1490 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.5909 -0.2737 2.1359 32 1 3.1246 -0.6286 1.3050 33 1 -2.5086 -2.8081 2.4050 34 1 -2.4735 -0.9939 2.2872 35 1 -1.0518 -3.0298 5.6552 36 1 -0.7720 -1.1905 7.7463 37 1 -0.1597 -0.1646 3.4615 38 1 0.7078 -1.6552 4.0373 39 1 1.7961 -3.8475 -0.2960 40 1 2.6231 -2.3141 -0.8121 41 1 4.2643 -2.4826 1.0017 42 1 3.8928 -4.2587 0.9096 43 1 2.8517 -2.5631 3.0029 44 1 1.9568 -4.0224 2.3958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:05 Heat of formation + Delta-G solvation = -44.485674 kcal Electronic energy + Delta-G solvation = -24105.273063 eV Core-core repulsion = 20831.102720 eV Total energy + Delta-G solvation = -3274.170342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 7.19 seconds Orbital eigenvalues (eV) -40.63390 -38.48905 -36.64014 -35.34943 -33.89284 -32.19109 -29.31186 -27.78818 -26.96491 -25.71564 -25.35545 -25.13515 -23.95822 -20.50292 -20.19098 -18.79168 -17.86256 -17.28555 -16.41787 -15.74975 -15.45685 -15.11158 -14.67728 -14.29021 -14.13421 -13.80401 -13.67034 -12.92153 -12.66769 -12.55146 -12.38546 -12.14551 -12.07365 -11.92768 -11.87129 -11.58053 -11.44426 -11.14959 -11.05132 -10.86963 -10.77955 -10.60785 -10.49855 -10.48327 -10.25794 -10.07181 -9.88460 -9.49326 -9.00389 -8.74489 -8.34970 -7.74892 -6.38866 -4.48773 3.12991 3.22784 3.26016 3.27673 3.65303 4.18779 4.58995 4.65538 4.83850 4.87864 4.90250 5.06543 5.14979 5.25349 5.31309 5.60258 5.68866 5.69758 5.77451 5.79676 5.88054 5.97055 5.97743 6.02305 6.05416 6.08578 6.14226 6.19728 6.23559 6.26253 6.38331 6.41748 6.52094 6.53972 6.57539 6.66210 6.71390 6.77124 7.12908 7.63898 7.84034 8.54312 8.58131 8.87279 9.22505 9.47702 10.67531 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.005638 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.412769 B = 4965.289598 C = 5357.148496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.090 4.090 5 C -0.099 4.099 6 C 0.554 3.446 7 O -0.569 6.569 8 N -0.627 5.627 9 C 0.109 3.891 10 C 0.239 3.761 11 O -0.573 6.573 12 C -0.535 4.535 13 H 0.071 0.929 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.082 3.918 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 2.739 -7.909 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.102 4.102 6 C 0.345 3.655 7 O -0.451 6.451 8 N -0.359 5.359 9 C -0.013 4.013 10 C 0.197 3.803 11 O -0.385 6.385 12 C -0.573 4.573 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.041 4.041 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.159 4.159 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.095 2.108 -8.906 12.218 hybrid contribution -0.194 0.979 1.217 1.574 sum 7.901 3.087 -7.688 11.449 Atomic orbital electron populations 1.22214 0.95036 1.03434 1.01664 1.21087 0.96366 0.95690 0.98082 1.21831 1.00441 0.96197 1.01746 1.21479 1.00794 0.91535 0.98908 1.22061 0.91976 0.96609 0.99544 1.19722 0.88175 0.77980 0.79629 1.90614 1.71819 1.43354 1.39319 1.50076 1.09566 1.56415 1.19874 1.23431 0.82484 1.00709 0.94652 1.19852 0.89565 0.82922 0.87973 1.86061 1.89501 1.29223 1.33732 1.21560 1.18675 1.21728 0.95345 0.91116 1.25056 0.94403 0.95864 0.97686 1.69334 1.29305 1.41319 1.13912 0.86314 0.79867 0.80616 0.79929 1.19468 1.20657 1.20716 1.24228 1.02470 0.96558 0.80841 1.22882 0.95990 1.00506 0.95698 1.22860 0.96541 1.01611 0.96752 1.22866 0.96569 0.99710 0.96708 0.92359 0.93382 0.90732 0.91285 0.93002 0.92931 0.92569 0.90613 0.91256 0.91372 0.89902 0.75287 0.91763 0.90440 0.91532 0.89166 0.91241 0.90205 0.91396 0.90800 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 7.94 37.16 0.30 -2.28 16 2 C -0.09 -1.25 2.84 -90.62 -0.26 -1.50 16 3 C -0.14 -1.62 9.18 37.15 0.34 -1.28 16 4 C -0.09 -1.24 4.13 -26.72 -0.11 -1.35 16 5 C -0.10 -1.55 0.62 -154.84 -0.10 -1.65 16 6 C 0.55 11.00 4.10 -10.98 -0.05 10.96 16 7 O -0.57 -12.95 15.59 5.56 0.09 -12.86 16 8 N -0.63 -12.88 3.14 -178.31 -0.56 -13.44 16 9 C 0.11 2.38 8.23 -2.97 -0.02 2.35 16 10 C 0.24 5.63 1.44 -90.85 -0.13 5.50 16 11 O -0.57 -14.66 13.48 -35.23 -0.48 -15.14 16 12 C -0.53 -13.25 8.62 -34.44 -0.30 -13.55 16 13 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 15 N -0.90 -22.44 11.09 55.43 0.61 -21.82 16 16 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.08 1.71 6.39 -2.98 -0.02 1.69 16 21 C -0.11 -1.58 6.76 -25.82 -0.17 -1.76 16 22 C -0.14 -1.68 7.74 -25.83 -0.20 -1.88 16 23 C -0.12 -1.77 7.21 -25.92 -0.19 -1.96 16 24 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 25 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.07 1.37 4.55 -51.93 -0.24 1.13 16 27 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.14 6.08 -51.93 -0.32 0.83 16 32 H 0.07 0.83 7.32 -51.93 -0.38 0.45 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 35 H 0.39 10.11 6.47 45.56 0.29 10.40 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.08 1.56 7.82 -51.93 -0.41 1.16 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 1.41 7.53 -51.93 -0.39 1.02 16 40 H 0.07 0.88 6.64 -51.93 -0.34 0.53 16 41 H 0.08 0.83 7.62 -51.93 -0.40 0.43 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.08 1.37 8.09 -51.93 -0.42 0.94 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -27.09 340.66 -7.91 -35.00 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.69 Total: 13.87 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.00 Total: -5.02 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.06 Total: -35.27 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.39 Total: -28.00 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.09 -7.91 -35.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.481 kcal (2) G-P(sol) polarization free energy of solvation -27.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.19 seconds