Wall clock time and date at job start Tue Mar 31 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99732 * 2 1 4 4 H 1.48506 * 109.46848 * 240.00229 * 3 2 1 5 5 H 1.48498 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46910 * 120.00292 * 3 2 1 7 7 C 1.37872 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00036 * 359.97438 * 7 2 1 10 10 O 1.42908 * 113.40995 * 46.79917 * 9 7 2 11 11 C 1.53495 * 114.20558 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98561 * 139.65804 * 11 9 7 13 13 C 1.34772 * 136.06330 * 152.84378 * 12 11 9 14 14 O 1.21282 * 119.99607 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00480 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47573 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46969 * 179.97438 * 17 16 15 19 19 C 1.54894 * 110.48128 * 68.24577 * 18 17 16 20 20 C 1.55238 * 102.58338 * 156.67574 * 19 18 17 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 C 1.47073 * 87.88341 * 333.10006 * 12 11 9 24 24 H 0.97001 * 120.00719 * 359.97438 * 1 2 3 25 25 H 0.96690 * 113.99881 * 313.19930 * 10 9 7 26 26 H 1.09002 * 113.46928 * 24.87562 * 11 9 7 27 27 H 1.09007 * 113.47116 * 254.43317 * 11 9 7 28 28 H 1.09004 * 109.47006 * 59.99797 * 15 13 12 29 29 H 1.09001 * 109.47020 * 300.00076 * 15 13 12 30 30 H 1.09000 * 109.46775 * 59.99624 * 16 15 13 31 31 H 1.09001 * 109.46917 * 300.00026 * 16 15 13 32 32 H 1.09002 * 109.47103 * 60.00706 * 17 16 15 33 33 H 1.08991 * 109.47392 * 299.99926 * 17 16 15 34 34 H 1.09002 * 110.43542 * 305.70425 * 18 17 16 35 35 H 1.08996 * 110.75388 * 275.05927 * 19 18 17 36 36 H 1.08993 * 110.76071 * 38.44153 * 19 18 17 37 37 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 38 38 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 39 39 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 40 40 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 41 41 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 42 42 H 1.08996 * 110.07773 * 119.30576 * 22 21 20 43 43 H 1.08998 * 113.46670 * 141.67511 * 23 12 11 44 44 H 1.08992 * 113.46996 * 272.12121 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1893 -2.5418 -0.9561 11 6 2.1489 -3.7441 -0.0018 12 7 1.2108 -4.3579 0.9501 13 6 0.8357 -5.6118 1.2713 14 8 1.3288 -6.5585 0.6955 15 6 -0.1964 -5.8378 2.3459 16 6 -0.4384 -7.3392 2.5131 17 6 -1.4858 -7.5685 3.6045 18 6 -1.7283 -9.0700 3.7713 19 6 -0.4765 -9.7579 4.3705 20 6 -1.0706 -11.0391 5.0151 21 6 -2.4203 -10.5773 5.6023 22 6 -2.8385 -9.3254 4.8115 23 6 0.8572 -3.0006 1.3928 24 1 -0.4851 0.8400 0.0004 25 1 -0.3743 -1.7561 -0.9531 26 1 3.1389 -3.5658 0.4181 27 1 2.1845 -4.2528 -0.9652 28 1 -1.1285 -5.3484 2.0631 29 1 0.1618 -5.4208 3.2871 30 1 0.4938 -7.8282 2.7961 31 1 -0.7965 -7.7566 1.5720 32 1 -2.4181 -7.0796 3.3219 33 1 -1.1274 -7.1513 4.5455 34 1 -1.9906 -9.5217 2.8146 35 1 0.2370 -10.0121 3.5867 36 1 -0.0123 -9.1246 5.1264 37 1 -0.4163 -11.4066 5.8057 38 1 -1.2266 -11.8106 4.2609 39 1 -2.3035 -10.3308 6.6576 40 1 -3.1680 -11.3615 5.4828 41 1 -2.9246 -8.4712 5.4830 42 1 -3.7888 -9.5013 4.3076 43 1 -0.2033 -2.8783 1.6128 44 1 1.4996 -2.6223 2.1879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431392285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:05 Heat of formation + Delta-G solvation = -84.902616 kcal Electronic energy + Delta-G solvation = -21940.398827 eV Core-core repulsion = 18664.475874 eV Total energy + Delta-G solvation = -3275.922952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.60090 -38.62871 -37.45671 -34.19029 -33.96716 -32.19976 -30.30787 -28.87337 -28.49531 -26.00601 -25.10351 -24.60393 -21.77761 -20.50095 -20.03014 -19.79827 -18.14547 -17.40286 -16.29092 -15.88061 -15.52934 -15.46674 -15.13849 -14.66122 -14.35691 -14.15386 -13.53672 -13.36754 -13.14858 -12.73541 -12.56973 -12.26997 -12.09729 -11.74034 -11.56271 -11.41296 -11.40376 -11.20204 -11.05354 -11.02872 -10.79493 -10.71058 -10.62462 -10.55120 -10.49323 -10.34459 -10.25847 -9.59121 -9.13599 -8.77611 -8.38565 -7.81708 -6.41124 -4.51554 3.15198 3.21148 3.22939 3.27555 3.61694 4.17128 4.41021 4.47907 4.55781 4.81191 4.96782 5.05414 5.13400 5.27586 5.34937 5.36733 5.47720 5.48783 5.57993 5.59711 5.66650 5.70271 5.78387 5.85627 5.88643 5.94265 5.97270 6.01132 6.07746 6.16721 6.21589 6.27893 6.39052 6.43467 6.49588 6.53080 6.67428 6.70792 7.11253 7.61963 7.80188 8.50983 8.58093 8.82651 9.19870 9.48832 10.65488 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037649 B = 0.002796 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.529454 B =10011.314352 C =10298.192916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.572 6.572 11 C 0.105 3.895 12 N -0.637 5.637 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.132 4.132 16 C -0.101 4.101 17 C -0.112 4.112 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.122 4.122 23 C 0.072 3.928 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 -12.555 10.435 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.017 4.017 12 N -0.370 5.370 13 C 0.323 3.677 14 O -0.448 6.448 15 C -0.172 4.172 16 C -0.139 4.139 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.051 4.051 24 H 0.085 0.915 25 H 0.250 0.750 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.260 -13.705 10.060 17.527 hybrid contribution 0.099 1.519 0.302 1.552 sum -4.161 -12.186 10.363 16.528 Atomic orbital electron populations 1.69251 1.06204 1.28311 1.50172 1.25080 0.95033 0.99926 0.93033 0.86363 0.79478 0.81527 0.79005 1.19817 1.20981 1.19878 1.21400 0.93891 0.89795 1.52085 0.90999 1.19497 0.85410 0.91059 0.84309 1.86048 1.44934 1.48283 1.59216 1.23305 0.93850 0.92266 0.92284 1.49760 1.42265 1.04890 1.40075 1.20145 0.83085 0.80799 0.83666 1.90622 1.58242 1.40766 1.55179 1.21575 0.98957 0.98554 0.98152 1.21331 0.99367 0.94127 0.99046 1.21661 0.99137 0.95164 0.99000 1.22011 0.94905 0.95588 0.98553 1.22648 0.97234 0.96154 0.99806 1.22424 0.96328 0.97846 0.99805 1.22126 0.97121 0.97525 0.99476 1.22211 0.98353 0.97729 0.97637 1.24139 1.00337 0.78019 1.02594 0.91521 0.75020 0.89848 0.91686 0.89333 0.89611 0.91341 0.91413 0.91930 0.91940 0.90782 0.91378 0.91437 0.92000 0.91825 0.92108 0.92209 0.91761 0.92070 0.91794 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.60 11.01 55.43 0.61 -21.98 16 2 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 3 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.53 -13.30 8.69 -34.44 -0.30 -13.60 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.24 5.75 1.57 -91.39 -0.14 5.61 16 10 O -0.57 -14.84 13.53 -35.23 -0.48 -15.32 16 11 C 0.11 2.34 8.03 -8.51 -0.07 2.27 16 12 N -0.64 -13.63 3.69 -185.37 -0.68 -14.32 16 13 C 0.53 10.89 8.08 -10.99 -0.09 10.80 16 14 O -0.57 -13.19 16.76 5.56 0.09 -13.09 16 15 C -0.13 -2.04 5.53 -27.88 -0.15 -2.19 16 16 C -0.10 -1.37 4.37 -26.73 -0.12 -1.48 16 17 C -0.11 -1.20 4.56 -26.73 -0.12 -1.32 16 18 C -0.09 -0.90 2.87 -88.96 -0.25 -1.16 16 19 C -0.12 -1.16 5.62 -24.55 -0.14 -1.29 16 20 C -0.13 -1.05 6.84 -24.88 -0.17 -1.22 16 21 C -0.12 -0.99 6.80 -25.62 -0.17 -1.17 16 22 C -0.12 -1.05 6.37 -25.62 -0.16 -1.21 16 23 C 0.07 1.55 7.82 -8.64 -0.07 1.48 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.39 10.26 6.33 45.56 0.29 10.55 16 26 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 27 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.97 7.42 -51.93 -0.39 0.59 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 36 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.54 7.84 -51.93 -0.41 0.14 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -27.79 354.05 -9.41 -37.20 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.21 Total: 10.75 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.06 Total: -2.81 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.30 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.38 Total: -28.41 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.79 -9.41 -37.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431392285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.700 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds