Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00481 * 2 1 4 4 H 1.48503 * 109.46949 * 274.20511 * 3 2 1 5 5 H 1.48505 * 109.46987 * 34.20123 * 3 2 1 6 6 H 1.48491 * 109.47185 * 154.20428 * 3 2 1 7 7 C 1.37876 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00607 * 351.89363 * 7 2 1 9 9 C 1.50704 * 120.00001 * 172.16737 * 7 2 1 10 10 C 1.53000 * 115.55135 * 296.87402 * 9 7 2 11 11 N 1.46503 * 109.46814 * 295.49033 * 10 9 7 12 12 C 1.34780 * 119.99814 * 184.48827 * 11 10 9 13 13 O 1.21278 * 119.99892 * 5.08384 * 12 11 10 14 14 C 1.50704 * 119.99554 * 185.07730 * 12 11 10 15 15 H 1.08993 * 109.46975 * 53.91783 * 14 12 11 16 16 O 1.42898 * 109.46583 * 173.91954 * 14 12 11 17 17 C 1.52994 * 109.47025 * 293.91565 * 14 12 11 18 18 C 1.52995 * 109.47522 * 295.69829 * 17 14 12 19 19 C 1.53004 * 109.47595 * 179.97438 * 18 17 14 20 20 C 1.53006 * 109.46522 * 59.99973 * 19 18 17 21 21 C 1.52995 * 109.47208 * 300.00264 * 20 19 18 22 22 C 1.52994 * 109.47522 * 60.00294 * 21 20 19 23 23 C 1.53002 * 117.50171 * 151.19769 * 9 7 2 24 24 C 1.53007 * 117.49567 * 82.53715 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47149 * 55.49159 * 10 9 7 27 27 H 1.08998 * 109.47063 * 175.49414 * 10 9 7 28 28 H 0.97003 * 119.99754 * 4.49625 * 11 10 9 29 29 H 0.96702 * 114.00145 * 59.99954 * 16 14 12 30 30 H 1.09001 * 109.47672 * 55.70318 * 17 14 12 31 31 H 1.08997 * 109.47404 * 300.00540 * 18 17 14 32 32 H 1.09004 * 109.47442 * 60.00266 * 18 17 14 33 33 H 1.08997 * 109.47266 * 300.00723 * 19 18 17 34 34 H 1.08999 * 109.47304 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46840 * 179.97438 * 20 19 18 36 36 H 1.09006 * 109.46828 * 60.00649 * 20 19 18 37 37 H 1.09001 * 109.47046 * 299.99422 * 21 20 19 38 38 H 1.09009 * 109.46769 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47231 * 179.97438 * 22 21 20 40 40 H 1.09006 * 109.46995 * 59.99320 * 22 21 20 41 41 H 1.09000 * 117.49559 * 0.02562 * 23 9 7 42 42 H 1.08992 * 117.49886 * 145.02472 * 23 9 7 43 43 H 1.08994 * 117.49732 * 214.98234 * 24 9 7 44 44 H 1.08998 * 117.50111 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4079 2.0976 -1.3963 5 1 1.4940 2.6254 0.7870 6 1 3.5884 1.4160 0.6092 7 6 2.0044 -1.1941 0.0005 8 1 1.4725 -2.1247 0.1328 9 6 3.5009 -1.2004 -0.1773 10 6 4.0084 -0.6651 -1.5178 11 7 3.5483 -1.5403 -2.5988 12 6 3.9509 -1.3156 -3.8653 13 8 4.7655 -0.4477 -4.0977 14 6 3.3890 -2.1431 -4.9925 15 1 2.3002 -2.1006 -4.9666 16 8 3.8564 -1.6276 -6.2406 17 6 3.8467 -3.5947 -4.8368 18 6 5.3681 -3.6680 -4.9803 19 6 5.8259 -5.1196 -4.8240 20 6 5.1695 -5.9805 -5.9053 21 6 3.6480 -5.9071 -5.7618 22 6 3.1903 -4.4557 -5.9181 23 6 4.2844 -2.3449 0.4686 24 6 4.3605 -0.9352 1.0604 25 1 -0.4850 0.8401 -0.0004 26 1 3.6227 0.3420 -1.6764 27 1 5.0981 -0.6397 -1.5098 28 1 2.9537 -2.2813 -2.4030 29 1 4.8189 -1.6349 -6.3335 30 1 3.5563 -3.9638 -3.8532 31 1 5.6585 -3.2990 -5.9639 32 1 5.8358 -3.0551 -4.2097 33 1 5.5355 -5.4882 -3.8402 34 1 6.9098 -5.1717 -4.9258 35 1 5.4959 -7.0145 -5.7942 36 1 5.4599 -5.6119 -6.8891 37 1 3.3577 -6.2758 -4.7779 38 1 3.1805 -6.5208 -6.5319 39 1 2.1064 -4.4035 -5.8163 40 1 3.4808 -4.0870 -6.9019 41 1 3.7173 -3.0936 1.0218 42 1 5.1615 -2.7163 -0.0612 43 1 5.2877 -0.3798 0.9195 44 1 3.8437 -0.7558 2.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435960306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = -94.711291 kcal Electronic energy + Delta-G solvation = -23309.386014 eV Core-core repulsion = 20033.037726 eV Total energy + Delta-G solvation = -3276.348288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21068 -38.32108 -37.09281 -35.81737 -33.55280 -32.23260 -31.43158 -30.86946 -27.75754 -26.08077 -24.74106 -22.82464 -21.97373 -21.62040 -20.03359 -19.62782 -19.28871 -17.59810 -16.49118 -16.39530 -15.74851 -15.23018 -15.10505 -14.67153 -14.33720 -14.14374 -13.99514 -13.76981 -13.30115 -12.95864 -12.72415 -12.49366 -12.32823 -12.23239 -12.11080 -11.68551 -11.37612 -11.17379 -11.10466 -10.93609 -10.75112 -10.64082 -10.57159 -10.35748 -10.27764 -10.07325 -9.62654 -9.24958 -9.11530 -8.83927 -8.51357 -8.34393 -6.22404 -4.24648 2.96789 3.25624 3.36272 3.41657 3.62554 4.34327 4.35401 4.51954 4.56853 4.63481 4.80424 5.01846 5.08788 5.14293 5.15808 5.27118 5.32042 5.40113 5.44720 5.55091 5.60928 5.66014 5.74771 5.91530 5.91838 5.99401 6.02099 6.05136 6.08927 6.13860 6.17733 6.21279 6.35677 6.39851 6.46667 6.66406 6.88630 7.00894 7.09860 7.56110 7.62705 8.09829 8.36405 8.66314 8.79300 9.41650 10.88453 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.004982 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.055969 B = 5618.441086 C = 5882.222727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.153 3.847 11 N -0.696 5.696 12 C 0.480 3.520 13 O -0.553 6.553 14 C 0.095 3.905 15 H 0.125 0.875 16 O -0.538 6.538 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.180 4.180 24 C -0.186 4.186 25 H 0.266 0.734 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.407 0.593 29 H 0.377 0.623 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -10.710 -9.840 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.692 3.308 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.529 4.529 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.029 3.971 11 N -0.347 5.347 12 C 0.265 3.735 13 O -0.433 6.433 14 C 0.033 3.967 15 H 0.142 0.858 16 O -0.343 6.343 17 C -0.133 4.133 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.217 4.217 24 C -0.224 4.224 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.242 0.758 29 H 0.227 0.773 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.651 -9.880 -10.104 16.569 hybrid contribution 0.582 0.655 0.409 0.967 sum 9.233 -9.226 -9.695 16.259 Atomic orbital electron populations 1.69896 1.06383 1.27348 1.48979 1.24903 0.94484 0.99058 0.93468 0.87054 0.81621 0.83676 0.78475 1.20421 1.21736 1.17268 1.20220 0.86902 0.94724 1.51011 0.90374 1.19612 0.94669 0.98884 0.88682 1.21085 0.96561 0.93158 0.86290 1.45887 1.49520 1.32931 1.06317 1.21444 0.82400 0.84917 0.84779 1.90658 1.34067 1.34507 1.84040 1.21940 1.00417 0.91138 0.83240 0.85795 1.86550 1.27790 1.86256 1.33727 1.21814 0.96304 0.94112 1.01024 1.21598 0.94760 0.97294 1.02160 1.21486 0.99771 0.94781 0.99316 1.21543 0.95593 0.99471 0.99086 1.21541 0.95655 0.96621 1.01908 1.21507 1.00005 0.94233 0.98914 1.22789 1.01719 0.91839 1.05358 1.23041 1.01193 0.98414 0.99792 0.92405 0.92558 0.93239 0.75757 0.77344 0.89522 0.91705 0.91588 0.91768 0.92087 0.92275 0.92107 0.91857 0.92064 0.91601 0.91198 0.89620 0.90956 0.91165 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 3 Si 0.86 21.13 24.96 -169.99 -4.24 16.89 16 4 H -0.28 -6.98 7.00 56.52 0.40 -6.59 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.73 5.79 56.52 0.33 -5.40 16 7 C -0.49 -12.62 9.12 -34.44 -0.31 -12.93 16 8 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 9 C -0.02 -0.37 0.86 -155.65 -0.13 -0.51 16 10 C 0.15 3.22 5.15 -4.04 -0.02 3.20 16 11 N -0.70 -12.91 5.42 -60.29 -0.33 -13.24 16 12 C 0.48 8.60 6.10 -10.98 -0.07 8.53 16 13 O -0.55 -11.77 16.30 -14.28 -0.23 -12.00 16 14 C 0.10 1.34 3.14 -27.88 -0.09 1.25 16 15 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 16 O -0.54 -7.75 12.42 -55.07 -0.68 -8.44 16 17 C -0.11 -1.27 2.01 -90.62 -0.18 -1.45 16 18 C -0.12 -1.30 4.60 -26.73 -0.12 -1.42 16 19 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 21 C -0.12 -1.04 5.92 -26.74 -0.16 -1.20 16 22 C -0.11 -1.07 5.10 -26.73 -0.14 -1.21 16 23 C -0.18 -3.35 9.96 -26.69 -0.27 -3.62 16 24 C -0.19 -3.73 8.15 -26.69 -0.22 -3.95 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.06 1.33 4.92 -51.93 -0.26 1.08 16 27 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 28 H 0.41 7.03 7.95 -40.82 -0.32 6.70 16 29 H 0.38 4.73 6.94 45.56 0.32 5.04 16 30 H 0.09 0.98 7.74 -51.93 -0.40 0.58 16 31 H 0.06 0.65 6.72 -51.93 -0.35 0.31 16 32 H 0.07 0.84 7.36 -51.93 -0.38 0.46 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -30.19 341.94 -8.61 -38.80 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.93 Total: 11.41 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.12 Total: -13.49 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.45 Total: -38.32 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.92 Total: -20.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.24 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.19 -8.61 -38.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435960306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.910 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds