Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00481 * 2 1 4 4 H 1.48503 * 109.46949 * 274.20511 * 3 2 1 5 5 H 1.48505 * 109.46987 * 34.20123 * 3 2 1 6 6 H 1.48491 * 109.47185 * 154.20428 * 3 2 1 7 7 C 1.37876 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00607 * 351.89363 * 7 2 1 9 9 C 1.50704 * 120.00001 * 172.16737 * 7 2 1 10 10 C 1.53000 * 115.55135 * 296.87402 * 9 7 2 11 11 N 1.46503 * 109.46814 * 295.49033 * 10 9 7 12 12 C 1.34780 * 119.99814 * 184.48827 * 11 10 9 13 13 O 1.21278 * 119.99892 * 5.08384 * 12 11 10 14 14 C 1.50704 * 119.99554 * 185.07730 * 12 11 10 15 15 H 1.08993 * 109.46975 * 53.91783 * 14 12 11 16 16 O 1.42898 * 109.46583 * 173.91954 * 14 12 11 17 17 C 1.52994 * 109.47025 * 293.91565 * 14 12 11 18 18 C 1.52995 * 109.47522 * 295.69829 * 17 14 12 19 19 C 1.53004 * 109.47595 * 179.97438 * 18 17 14 20 20 C 1.53006 * 109.46522 * 59.99973 * 19 18 17 21 21 C 1.52995 * 109.47208 * 300.00264 * 20 19 18 22 22 C 1.52994 * 109.47522 * 60.00294 * 21 20 19 23 23 C 1.53002 * 117.50171 * 151.19769 * 9 7 2 24 24 C 1.53007 * 117.49567 * 82.53715 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47149 * 55.49159 * 10 9 7 27 27 H 1.08998 * 109.47063 * 175.49414 * 10 9 7 28 28 H 0.97003 * 119.99754 * 4.49625 * 11 10 9 29 29 H 0.96702 * 114.00145 * 59.99954 * 16 14 12 30 30 H 1.09001 * 109.47672 * 55.70318 * 17 14 12 31 31 H 1.08997 * 109.47404 * 300.00540 * 18 17 14 32 32 H 1.09004 * 109.47442 * 60.00266 * 18 17 14 33 33 H 1.08997 * 109.47266 * 300.00723 * 19 18 17 34 34 H 1.08999 * 109.47304 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46840 * 179.97438 * 20 19 18 36 36 H 1.09006 * 109.46828 * 60.00649 * 20 19 18 37 37 H 1.09001 * 109.47046 * 299.99422 * 21 20 19 38 38 H 1.09009 * 109.46769 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47231 * 179.97438 * 22 21 20 40 40 H 1.09006 * 109.46995 * 59.99320 * 22 21 20 41 41 H 1.09000 * 117.49559 * 0.02562 * 23 9 7 42 42 H 1.08992 * 117.49886 * 145.02472 * 23 9 7 43 43 H 1.08994 * 117.49732 * 214.98234 * 24 9 7 44 44 H 1.08998 * 117.50111 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4079 2.0976 -1.3963 5 1 1.4940 2.6254 0.7870 6 1 3.5884 1.4160 0.6092 7 6 2.0044 -1.1941 0.0005 8 1 1.4725 -2.1247 0.1328 9 6 3.5009 -1.2004 -0.1773 10 6 4.0084 -0.6651 -1.5178 11 7 3.5483 -1.5403 -2.5988 12 6 3.9509 -1.3156 -3.8653 13 8 4.7655 -0.4477 -4.0977 14 6 3.3890 -2.1431 -4.9925 15 1 2.3002 -2.1006 -4.9666 16 8 3.8564 -1.6276 -6.2406 17 6 3.8467 -3.5947 -4.8368 18 6 5.3681 -3.6680 -4.9803 19 6 5.8259 -5.1196 -4.8240 20 6 5.1695 -5.9805 -5.9053 21 6 3.6480 -5.9071 -5.7618 22 6 3.1903 -4.4557 -5.9181 23 6 4.2844 -2.3449 0.4686 24 6 4.3605 -0.9352 1.0604 25 1 -0.4850 0.8401 -0.0004 26 1 3.6227 0.3420 -1.6764 27 1 5.0981 -0.6397 -1.5098 28 1 2.9537 -2.2813 -2.4030 29 1 4.8189 -1.6349 -6.3335 30 1 3.5563 -3.9638 -3.8532 31 1 5.6585 -3.2990 -5.9639 32 1 5.8358 -3.0551 -4.2097 33 1 5.5355 -5.4882 -3.8402 34 1 6.9098 -5.1717 -4.9258 35 1 5.4959 -7.0145 -5.7942 36 1 5.4599 -5.6119 -6.8891 37 1 3.3577 -6.2758 -4.7779 38 1 3.1805 -6.5208 -6.5319 39 1 2.1064 -4.4035 -5.8163 40 1 3.4808 -4.0870 -6.9019 41 1 3.7173 -3.0936 1.0218 42 1 5.1615 -2.7163 -0.0612 43 1 5.2877 -0.3798 0.9195 44 1 3.8437 -0.7558 2.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435960306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -114.499330 kcal Electronic energy + Delta-G solvation = -23310.244088 eV Core-core repulsion = 20033.037726 eV Total energy + Delta-G solvation = -3277.206362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46244 -39.52108 -38.61467 -36.95214 -35.08691 -34.29045 -32.39088 -31.63399 -29.14476 -27.79335 -26.29445 -23.63692 -23.27431 -22.80924 -21.36971 -20.97848 -20.52032 -19.09345 -18.17494 -17.60451 -17.13413 -16.91678 -16.13487 -16.10504 -15.50624 -15.36360 -15.00077 -14.91252 -14.85191 -14.67823 -14.16184 -13.86336 -13.68276 -13.23135 -13.03291 -13.02701 -12.86477 -12.67779 -12.23465 -12.20591 -12.10344 -11.98145 -11.81668 -11.51100 -11.33564 -11.25828 -11.03454 -10.89995 -10.71422 -10.58005 -10.23335 -9.94732 -8.33468 -6.35779 1.28732 1.36248 1.45365 1.54905 2.19778 2.32474 2.96838 3.24826 3.34196 3.61194 3.68096 3.78802 3.93527 4.01325 4.21943 4.28505 4.33699 4.40697 4.44736 4.48973 4.50797 4.59558 4.64790 4.69064 4.75728 4.79203 4.90893 5.02070 5.05787 5.15968 5.23659 5.25063 5.29999 5.31390 5.40335 5.44462 5.47568 5.54010 5.61224 5.67539 6.28448 6.44534 6.65729 6.73556 7.21054 7.32543 8.80690 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.004982 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.055969 B = 5618.441086 C = 5882.222727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.037 3.963 3 Si 0.911 3.089 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.224 1.224 7 C -0.475 4.475 8 H 0.049 0.951 9 C -0.043 4.043 10 C 0.159 3.841 11 N -0.695 5.695 12 C 0.478 3.522 13 O -0.588 6.588 14 C 0.103 3.897 15 H 0.129 0.871 16 O -0.545 6.545 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.152 4.152 24 C -0.184 4.184 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.413 0.587 29 H 0.385 0.615 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -12.130 -10.329 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.147 1.147 7 C -0.512 4.512 8 H 0.067 0.933 9 C -0.044 4.044 10 C 0.035 3.965 11 N -0.346 5.346 12 C 0.265 3.735 13 O -0.470 6.470 14 C 0.040 3.960 15 H 0.146 0.854 16 O -0.352 6.352 17 C -0.124 4.124 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.188 4.188 24 C -0.222 4.222 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.249 0.751 29 H 0.236 0.764 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.484 -11.327 -10.584 18.714 hybrid contribution 0.030 1.034 0.544 1.168 sum 10.514 -10.294 -10.040 17.813 Atomic orbital electron populations 1.70008 1.07863 1.27787 1.51901 1.25515 0.94874 1.01836 0.93991 0.86313 0.81754 0.80559 0.77584 1.21917 1.22218 1.14658 1.20362 0.89168 0.93087 1.48607 0.93321 1.19455 0.92578 1.02575 0.89807 1.20876 0.96996 0.92121 0.86523 1.45877 1.49635 1.32776 1.06316 1.22165 0.81556 0.84554 0.85179 1.90633 1.35695 1.36105 1.84517 1.21981 1.00365 0.92110 0.81534 0.85392 1.86532 1.28643 1.86464 1.33523 1.21766 0.96817 0.92118 1.01697 1.21572 0.94118 0.98147 1.01736 1.21475 1.00313 0.93712 0.99608 1.21536 0.95181 0.99934 0.98796 1.21537 0.95992 0.95688 1.02313 1.21487 0.99964 0.94787 0.98093 1.22833 1.01452 0.90998 1.03564 1.23088 1.01175 0.99786 0.98183 0.92666 0.95399 0.92112 0.75105 0.76438 0.89479 0.91106 0.93694 0.92043 0.91388 0.91102 0.91778 0.91930 0.90905 0.91488 0.91319 0.89439 0.88235 0.89134 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.80 13.96 21.45 0.30 -55.50 16 2 C 0.04 2.04 5.46 84.65 0.46 2.50 16 3 Si 0.91 43.87 24.96 68.60 1.71 45.59 16 4 H -0.29 -14.63 7.00 99.48 0.70 -13.94 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.22 -9.75 5.79 99.48 0.58 -9.17 16 7 C -0.47 -24.41 9.12 25.60 0.23 -24.18 16 8 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 9 C -0.04 -1.79 0.86 -52.92 -0.05 -1.84 16 10 C 0.16 6.52 5.15 86.38 0.44 6.97 16 11 N -0.70 -25.29 5.42 -463.05 -2.51 -27.80 16 12 C 0.48 16.89 6.10 87.66 0.53 17.42 16 13 O -0.59 -24.82 16.30 15.94 0.26 -24.56 16 14 C 0.10 2.79 3.14 29.85 0.09 2.88 16 15 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 16 O -0.55 -15.15 12.42 -130.01 -1.61 -16.76 16 17 C -0.10 -2.19 2.01 -10.80 -0.02 -2.21 16 18 C -0.12 -2.36 4.60 30.59 0.14 -2.21 16 19 C -0.11 -1.86 5.92 30.60 0.18 -1.68 16 20 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 21 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 22 C -0.11 -1.86 5.10 30.59 0.16 -1.71 16 23 C -0.15 -5.19 9.96 30.62 0.30 -4.88 16 24 C -0.18 -6.86 8.15 30.62 0.25 -6.61 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.03 1.31 4.92 -2.39 -0.01 1.30 16 27 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 28 H 0.41 13.97 7.95 -92.71 -0.74 13.23 16 29 H 0.39 9.27 6.94 -74.06 -0.51 8.75 16 30 H 0.09 1.82 7.74 -2.39 -0.02 1.81 16 31 H 0.07 1.31 6.72 -2.39 -0.02 1.30 16 32 H 0.04 1.09 7.36 -2.38 -0.02 1.07 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.25 7.80 -2.38 -0.02 1.23 16 41 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -64.96 341.94 0.84 -64.12 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.40 Total: 33.47 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 3.10 Total: -18.56 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.21 Total: -83.30 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.35 Total: -41.32 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.71 Total: 45.59 kcal Total: -64.96 0.84 -64.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435960306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.382 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds