Wall clock time and date at job start Tue Mar 31 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48492 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47143 * 300.00282 * 3 2 1 6 6 H 1.48504 * 109.46970 * 59.99944 * 3 2 1 7 7 C 1.37873 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46919 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00487 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99919 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47382 * 324.99665 * 14 13 11 16 16 C 1.53005 * 109.46770 * 204.99508 * 14 13 11 17 17 H 1.09003 * 109.47011 * 182.49759 * 16 14 13 18 18 C 1.52995 * 109.47598 * 302.50096 * 16 14 13 19 19 O 1.42895 * 109.47452 * 184.99812 * 18 16 14 20 20 C 1.52998 * 109.46955 * 62.50645 * 16 14 13 21 21 C 1.52997 * 117.50129 * 133.92109 * 20 16 14 22 22 C 1.52998 * 117.50108 * 65.25914 * 20 16 14 23 23 C 1.53004 * 109.47552 * 85.00243 * 14 13 11 24 24 C 1.53004 * 117.49316 * 294.36186 * 23 14 13 25 25 C 1.53001 * 60.00036 * 107.48521 * 24 23 14 26 26 H 0.96997 * 119.99967 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46684 * 60.00364 * 9 7 2 28 28 H 1.08998 * 109.47791 * 300.00754 * 9 7 2 29 29 H 1.08995 * 109.46591 * 60.00620 * 10 9 7 30 30 H 1.08995 * 109.46647 * 300.00627 * 10 9 7 31 31 H 0.97002 * 119.99894 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47302 * 305.00057 * 18 16 14 33 33 H 1.09003 * 109.46826 * 64.99653 * 18 16 14 34 34 H 0.96698 * 114.00369 * 180.02562 * 19 18 16 35 35 H 1.09004 * 115.54810 * 279.59301 * 20 16 14 36 36 H 1.08999 * 117.50049 * 359.97438 * 21 20 16 37 37 H 1.09002 * 117.49912 * 145.02397 * 21 20 16 38 38 H 1.09002 * 117.49805 * 214.98294 * 22 20 16 39 39 H 1.09003 * 117.49958 * 359.97438 * 22 20 16 40 40 H 1.08990 * 115.56630 * 148.66942 * 23 14 13 41 41 H 1.09002 * 117.49813 * 359.97438 * 24 23 14 42 42 H 1.08996 * 117.49862 * 214.97542 * 24 23 14 43 43 H 1.09005 * 117.49712 * 107.48743 * 25 24 23 44 44 H 1.09004 * 117.50162 * 252.48582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1658 -6.1343 -0.0008 14 6 1.4334 -7.4030 -0.0019 15 1 0.5220 -7.2970 0.5866 16 6 2.3100 -8.4985 0.6083 17 1 1.7822 -9.4513 0.5670 18 6 3.6166 -8.6047 -0.1805 19 8 4.3844 -9.7033 0.3151 20 6 2.6207 -8.1505 2.0654 21 6 2.4676 -9.2622 3.1054 22 6 1.4497 -8.1203 3.0496 23 6 1.0711 -7.7815 -1.4395 24 6 0.0871 -6.8751 -2.1819 25 6 1.5700 -6.8649 -2.5584 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8721 -3.6042 -0.8904 31 1 3.1359 -6.1343 -0.0004 32 1 3.3924 -8.7646 -1.2352 33 1 4.1861 -7.6824 -0.0660 34 1 5.2282 -9.8304 -0.1396 35 1 3.4230 -7.4280 2.2154 36 1 2.1451 -10.2415 2.7516 37 1 3.1689 -9.2709 3.9398 38 1 1.4818 -7.3782 3.8474 39 1 0.4579 -8.3479 2.6590 40 1 1.0257 -8.8505 -1.6472 41 1 -0.3024 -6.0095 -1.6461 42 1 -0.6056 -7.3479 -2.8781 43 1 1.8529 -7.3310 -3.5023 44 1 2.1563 -5.9922 -2.2707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452971036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:28 Heat of formation + Delta-G solvation = -51.360894 kcal Electronic energy + Delta-G solvation = -22872.162991 eV Core-core repulsion = 19597.694517 eV Total energy + Delta-G solvation = -3274.468474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30149 -38.25489 -36.72145 -36.37186 -33.80002 -33.44049 -31.41780 -30.53061 -26.64997 -25.30723 -23.51597 -22.34777 -22.16010 -21.91629 -20.30575 -19.83092 -19.37769 -17.66603 -16.80877 -16.14303 -15.91840 -15.70401 -15.42528 -15.20120 -14.46049 -14.39461 -13.93187 -13.57495 -13.37190 -13.03358 -12.52158 -12.20250 -12.10414 -11.87615 -11.58667 -11.50627 -11.37155 -11.16110 -11.14158 -10.93547 -10.58003 -10.35372 -10.28369 -10.15634 -10.00308 -9.94926 -9.71672 -9.62674 -9.14732 -8.97904 -8.67418 -8.32005 -5.96133 -4.00332 3.25056 3.32302 3.39231 3.42176 3.49939 3.71627 3.96997 4.03345 4.40541 4.47779 4.63684 4.88364 4.97336 5.04580 5.06728 5.11922 5.13255 5.27319 5.39074 5.40502 5.46923 5.55699 5.62121 5.64325 5.78680 5.84969 5.90050 5.95748 6.06984 6.09954 6.19600 6.22836 6.24367 6.28482 6.59369 6.80765 6.89893 7.40240 7.74864 7.86890 7.90624 8.07397 8.39307 8.81634 9.08616 9.63353 11.14779 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.003964 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.546820 B = 7061.578776 C = 7491.988335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.512 3.488 12 O -0.528 6.528 13 N -0.735 5.735 14 C 0.186 3.814 15 H 0.096 0.904 16 C -0.058 4.058 17 H 0.088 0.912 18 C 0.083 3.917 19 O -0.569 6.569 20 C -0.136 4.136 21 C -0.171 4.171 22 C -0.180 4.180 23 C -0.176 4.176 24 C -0.180 4.180 25 C -0.175 4.175 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.376 0.624 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -20.480 -0.363 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.301 3.699 12 O -0.404 6.404 13 N -0.389 5.389 14 C 0.081 3.919 15 H 0.114 0.886 16 C -0.077 4.077 17 H 0.106 0.894 18 C 0.005 3.995 19 O -0.374 6.374 20 C -0.154 4.154 21 C -0.208 4.208 22 C -0.217 4.217 23 C -0.195 4.195 24 C -0.217 4.217 25 C -0.212 4.212 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.229 0.771 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.394 -20.396 0.049 21.375 hybrid contribution 1.431 0.964 -0.466 1.787 sum 7.825 -19.432 -0.417 20.952 Atomic orbital electron populations 1.70005 1.06035 1.26439 1.50314 1.25014 0.94800 0.99182 0.95322 0.86559 0.80015 0.83937 0.77590 1.19780 1.21025 1.21023 1.21258 0.92925 0.91059 1.51226 0.92647 1.18884 0.93125 0.89333 0.98577 1.21869 1.00747 0.92211 1.02297 1.21490 0.88714 0.85594 0.74127 1.90600 1.14362 1.87460 1.47959 1.46305 1.09761 1.05322 1.77522 1.20335 0.95420 0.82595 0.93595 0.88623 1.20993 0.95007 0.98749 0.92968 0.89387 1.22183 0.91825 0.88758 0.96747 1.86501 1.35481 1.51650 1.63785 1.22077 1.00919 1.01922 0.90469 1.22914 1.02526 0.94080 1.01235 1.22968 0.94808 1.01617 1.02306 1.22786 1.06663 0.96835 0.93240 1.23334 0.92194 1.03267 1.02871 1.22921 0.98432 1.02047 0.97832 0.93027 0.95831 0.95856 0.90408 0.90473 0.77131 0.92849 0.93745 0.77753 0.88041 0.89054 0.89234 0.88837 0.88852 0.87878 0.85953 0.89699 0.89637 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 11 C 0.51 9.26 6.49 -10.99 -0.07 9.19 16 12 O -0.53 -11.60 12.97 5.56 0.07 -11.53 16 13 N -0.73 -9.63 3.33 -53.80 -0.18 -9.81 16 14 C 0.19 2.25 2.04 -67.93 -0.14 2.11 16 15 H 0.10 1.40 7.01 -51.93 -0.36 1.03 16 16 C -0.06 -0.58 1.99 -90.62 -0.18 -0.76 16 17 H 0.09 0.89 7.94 -51.93 -0.41 0.47 16 18 C 0.08 0.71 5.99 37.15 0.22 0.93 16 19 O -0.57 -4.91 13.42 -35.23 -0.47 -5.39 16 20 C -0.14 -1.43 4.52 -90.62 -0.41 -1.84 16 21 C -0.17 -1.70 10.18 -26.70 -0.27 -1.97 16 22 C -0.18 -1.97 9.78 -26.70 -0.26 -2.24 16 23 C -0.18 -2.06 4.52 -90.61 -0.41 -2.47 16 24 C -0.18 -2.56 9.85 -26.73 -0.26 -2.82 16 25 C -0.18 -2.18 9.67 -26.73 -0.26 -2.43 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.39 4.25 6.81 -40.82 -0.28 3.97 16 32 H 0.05 0.44 7.13 -51.93 -0.37 0.07 16 33 H 0.04 0.35 6.59 -51.93 -0.34 0.01 16 34 H 0.38 1.67 9.12 45.56 0.42 2.09 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.10 1.04 8.07 -51.93 -0.42 0.63 16 41 H 0.12 2.21 5.30 -51.93 -0.28 1.93 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.32 6.37 -51.93 -0.33 0.99 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -33.29 352.97 -8.82 -42.12 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.55 Total: 7.00 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.73 Total: -17.72 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.56 Total: -36.39 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.40 Total: -16.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.29 -8.82 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452971036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.243 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds