Wall clock time and date at job start Tue Mar 31 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99919 * 2 1 4 4 H 1.48501 * 109.46962 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47295 * 119.99825 * 3 2 1 7 7 C 1.37875 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00159 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99554 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99625 * 180.02562 * 13 11 10 15 15 H 1.09009 * 109.47287 * 331.44398 * 14 13 11 16 16 C 1.53005 * 109.46944 * 211.45135 * 14 13 11 17 17 H 1.09003 * 109.46787 * 186.64870 * 16 14 13 18 18 C 1.52994 * 109.47393 * 66.64631 * 16 14 13 19 19 O 1.42895 * 109.47300 * 61.85709 * 18 16 14 20 20 C 1.53006 * 109.46793 * 306.64292 * 16 14 13 21 21 C 1.52994 * 117.51762 * 231.28474 * 20 16 14 22 22 C 1.52997 * 60.00191 * 107.48157 * 21 20 16 23 23 C 1.52999 * 109.47601 * 91.45139 * 14 13 11 24 24 C 1.53003 * 117.49705 * 8.73964 * 23 14 13 25 25 C 1.53002 * 117.49279 * 300.08577 * 23 14 13 26 26 H 0.97002 * 119.99887 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47078 * 59.99522 * 9 7 2 28 28 H 1.08993 * 109.47177 * 299.99805 * 9 7 2 29 29 H 1.08997 * 109.47007 * 59.99782 * 10 9 7 30 30 H 1.08998 * 109.47003 * 300.00115 * 10 9 7 31 31 H 0.96996 * 120.00023 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47198 * 181.85900 * 18 16 14 33 33 H 1.09004 * 109.46891 * 301.85954 * 18 16 14 34 34 H 0.96699 * 114.00163 * 179.97438 * 19 18 16 35 35 H 1.08994 * 115.54577 * 85.58196 * 20 16 14 36 36 H 1.08998 * 117.50059 * 214.97297 * 21 20 16 37 37 H 1.09003 * 117.49791 * 359.97438 * 21 20 16 38 38 H 1.08998 * 117.50185 * 252.51008 * 22 21 20 39 39 H 1.09002 * 117.49829 * 107.48314 * 22 21 20 40 40 H 1.08997 * 115.55019 * 154.41994 * 23 14 13 41 41 H 1.09003 * 117.49703 * 0.02562 * 24 23 14 42 42 H 1.09000 * 117.49447 * 145.01962 * 24 23 14 43 43 H 1.09005 * 117.49523 * 214.98109 * 25 23 14 44 44 H 1.08999 * 117.50275 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4917 -4.9671 -0.0001 12 8 0.2789 -4.9671 -0.0010 13 7 2.1657 -6.1343 0.0003 14 6 1.4332 -7.4030 -0.0009 15 1 0.4692 -7.2665 0.4894 16 6 2.2431 -8.4602 0.7524 17 1 1.7569 -9.4305 0.6513 18 6 2.3237 -8.0819 2.2327 19 8 1.0081 -8.0555 2.7899 20 6 3.6548 -8.5337 0.1671 21 6 4.1834 -9.9127 -0.2327 22 6 3.7882 -8.9026 -1.3118 23 6 1.2114 -7.8626 -1.4432 24 6 1.9301 -7.0882 -2.5499 25 6 0.4182 -6.9351 -2.3661 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 3.1357 -6.1343 0.0006 32 1 2.9283 -8.8175 2.7632 33 1 2.7800 -7.0970 2.3316 34 1 0.9829 -7.8227 3.7281 35 1 4.3702 -7.8191 0.5741 36 1 5.2465 -10.1054 -0.0888 37 1 3.5254 -10.7680 -0.0784 38 1 2.8702 -9.0932 -1.8677 39 1 4.5913 -8.4306 -1.8777 40 1 1.0858 -8.9366 -1.5804 41 1 2.5614 -6.2516 -2.2503 42 1 2.2773 -7.6528 -3.4152 43 1 -0.2288 -7.3990 -3.1106 44 1 0.0542 -5.9977 -1.9455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452971037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:32 Heat of formation + Delta-G solvation = -46.663547 kcal Electronic energy + Delta-G solvation = -23078.988251 eV Core-core repulsion = 19804.723469 eV Total energy + Delta-G solvation = -3274.264782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37720 -38.23448 -36.71965 -36.19389 -33.70904 -33.40005 -31.36228 -30.47643 -26.82145 -25.32854 -23.13696 -23.04697 -21.94004 -21.62867 -20.43873 -19.81914 -19.31964 -17.37468 -16.88994 -16.30731 -15.77039 -15.61646 -15.42266 -14.75592 -14.58453 -14.40251 -14.06961 -13.70703 -13.23982 -12.86038 -12.54831 -12.16822 -12.07132 -11.97802 -11.60199 -11.30138 -11.24570 -11.12473 -11.11693 -10.88563 -10.61471 -10.57360 -10.33811 -10.13118 -9.93805 -9.90984 -9.63530 -9.46373 -9.12448 -8.92021 -8.60555 -8.29123 -5.93534 -3.97924 3.33861 3.35543 3.40116 3.41618 3.56592 3.61305 3.97421 4.10572 4.49347 4.54300 4.65751 4.79026 4.86303 5.00316 5.07470 5.17158 5.21985 5.27421 5.38664 5.41190 5.44514 5.51991 5.66290 5.68901 5.74713 5.81331 5.86626 5.96443 6.04641 6.13453 6.20808 6.26566 6.30716 6.33363 6.55618 6.92246 6.94338 7.54766 7.76844 7.90322 8.01723 8.10587 8.42036 8.90166 9.11061 9.65383 11.17302 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.003998 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.740747 B = 7001.957356 C = 7223.305215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.039 3.961 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.529 6.529 13 N -0.732 5.732 14 C 0.184 3.816 15 H 0.102 0.898 16 C -0.059 4.059 17 H 0.086 0.914 18 C 0.083 3.917 19 O -0.569 6.569 20 C -0.152 4.152 21 C -0.184 4.184 22 C -0.172 4.172 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.182 4.182 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.394 0.606 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.380 0.620 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -21.106 0.508 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.404 6.404 13 N -0.386 5.386 14 C 0.079 3.921 15 H 0.120 0.880 16 C -0.078 4.078 17 H 0.104 0.896 18 C 0.005 3.995 19 O -0.374 6.374 20 C -0.170 4.170 21 C -0.221 4.221 22 C -0.209 4.209 23 C -0.184 4.184 24 C -0.207 4.207 25 C -0.219 4.219 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.716 -21.130 -0.097 22.495 hybrid contribution 1.250 1.006 0.540 1.693 sum 8.966 -20.124 0.443 22.035 Atomic orbital electron populations 1.69992 1.06030 1.26640 1.50141 1.25015 0.94803 0.99147 0.95338 0.86671 0.79561 0.83292 0.78505 1.20280 1.21287 1.20295 1.21190 0.92833 0.91101 1.51448 0.92771 1.18869 0.93126 0.89307 0.98558 1.21860 1.00703 0.92354 1.02173 1.21483 0.88737 0.85632 0.74320 1.90653 1.14351 1.87486 1.47928 1.46233 1.09701 1.05335 1.77342 1.20304 0.96624 0.82630 0.92531 0.87993 1.20976 0.94052 0.99671 0.93059 0.89581 1.22115 0.84282 0.99720 0.93354 1.86476 1.28241 1.93305 1.29421 1.22079 0.96947 0.99196 0.98813 1.23034 1.01294 0.92843 1.04907 1.23335 1.03884 1.02378 0.91284 1.22772 1.06236 0.96969 0.92413 1.22961 0.95640 1.02950 0.99117 1.23233 0.93998 1.02740 1.01940 0.92923 0.95865 0.95885 0.90587 0.90518 0.77220 0.93771 0.93240 0.77338 0.87811 0.89141 0.89017 0.87054 0.88944 0.88012 0.88522 0.89629 0.89648 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.65 7.04 -10.98 -0.08 9.58 16 12 O -0.53 -12.29 13.70 5.56 0.08 -12.22 16 13 N -0.73 -10.09 2.78 -53.80 -0.15 -10.24 16 14 C 0.18 2.40 2.08 -67.93 -0.14 2.26 16 15 H 0.10 1.72 6.79 -51.92 -0.35 1.37 16 16 C -0.06 -0.59 2.17 -90.62 -0.20 -0.78 16 17 H 0.09 0.86 7.89 -51.93 -0.41 0.45 16 18 C 0.08 0.84 6.36 37.15 0.24 1.07 16 19 O -0.57 -6.69 12.95 -35.23 -0.46 -7.14 16 20 C -0.15 -1.25 4.00 -90.62 -0.36 -1.61 16 21 C -0.18 -1.34 10.18 -26.74 -0.27 -1.61 16 22 C -0.17 -1.37 8.08 -26.73 -0.22 -1.58 16 23 C -0.16 -1.98 3.63 -90.62 -0.33 -2.31 16 24 C -0.17 -2.03 7.67 -26.69 -0.20 -2.24 16 25 C -0.18 -2.63 9.93 -26.69 -0.27 -2.89 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.39 4.47 7.25 -40.82 -0.30 4.17 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.52 7.76 -51.93 -0.40 0.11 16 34 H 0.38 2.94 9.12 45.56 0.42 3.36 16 35 H 0.10 0.81 7.75 -51.93 -0.40 0.40 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.11 0.94 4.34 -51.93 -0.23 0.72 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.07 7.22 -51.93 -0.38 0.69 16 41 H 0.10 1.26 6.88 -51.93 -0.36 0.90 16 42 H 0.09 0.88 8.02 -51.93 -0.42 0.46 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.11 2.05 5.74 -51.93 -0.30 1.75 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -34.06 347.09 -8.56 -42.61 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.46 Total: 7.60 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.52 Total: -15.74 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.59 Total: -37.09 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.38 Total: -19.36 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.06 -8.56 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452971037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.051 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds