Wall clock time and date at job start Tue Mar 31 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.47071 * 180.02562 * 14 12 11 16 16 C 1.42902 * 114.00110 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.46937 * 180.02562 * 16 15 14 18 18 C 1.54262 * 110.03452 * 292.90732 * 17 16 15 19 19 C 1.54970 * 104.16229 * 217.14162 * 18 17 16 20 20 C 1.54889 * 102.77679 * 37.88486 * 19 18 17 21 21 C 1.53883 * 110.03041 * 175.68852 * 17 16 15 22 22 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 23 23 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 24 24 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 25 25 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 26 26 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 27 27 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 28 28 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 29 29 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 30 30 H 1.09007 * 109.46776 * 300.00416 * 16 15 14 31 31 H 1.09000 * 109.47064 * 59.99548 * 16 15 14 32 32 H 1.09001 * 110.02181 * 54.30063 * 17 16 15 33 33 H 1.09006 * 110.48174 * 335.78353 * 18 17 16 34 34 H 1.08997 * 110.48739 * 98.42415 * 18 17 16 35 35 H 1.09004 * 110.71454 * 279.57351 * 19 18 17 36 36 H 1.08997 * 110.92353 * 156.29293 * 19 18 17 37 37 H 1.08998 * 110.48240 * 203.40858 * 20 19 18 38 38 H 1.09005 * 110.60020 * 80.81810 * 20 19 18 39 39 H 1.08999 * 110.03512 * 238.56839 * 21 17 16 40 40 H 1.09000 * 110.02937 * 359.95288 * 21 17 16 41 41 H 1.08997 * 117.49622 * 359.97438 * 22 9 7 42 42 H 1.09000 * 117.49928 * 145.02150 * 22 9 7 43 43 H 1.08996 * 117.50254 * 214.97905 * 23 9 7 44 44 H 1.09005 * 117.49689 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 8 3.0642 -4.5922 5.5299 16 6 4.2090 -4.9143 6.3223 17 6 3.7541 -5.4727 7.6720 18 6 3.0534 -4.3694 8.4914 19 6 3.4970 -4.6415 9.9511 20 6 4.9734 -5.0791 9.7844 21 6 4.9742 -5.9243 8.4939 22 6 1.5731 -3.5804 -0.9271 23 6 0.2453 -2.8219 -0.9976 24 1 -0.4851 0.8368 -0.0732 25 1 0.3750 -2.1615 2.0429 26 1 0.3014 -3.8500 1.4844 27 1 3.0164 -3.0718 1.8343 28 1 3.9647 -4.7898 3.6811 29 1 3.9582 -3.1438 4.3583 30 1 4.8107 -5.6614 5.8044 31 1 4.8045 -4.0156 6.4824 32 1 3.0756 -6.3121 7.5192 33 1 3.3884 -3.3836 8.1685 34 1 1.9707 -4.4547 8.3986 35 1 2.9039 -5.4430 10.3913 36 1 3.4282 -3.7360 10.5540 37 1 5.2910 -5.6817 10.6353 38 1 5.6208 -4.2094 9.6712 39 1 4.8875 -6.9824 8.7405 40 1 5.8903 -5.7463 7.9306 41 1 2.3246 -3.3505 -1.6824 42 1 1.5429 -4.6177 -0.5938 43 1 -0.6578 -3.3606 -0.7107 44 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456032148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:21 Heat of formation + Delta-G solvation = -82.379780 kcal Electronic energy + Delta-G solvation = -21787.044219 eV Core-core repulsion = 18511.230665 eV Total energy + Delta-G solvation = -3275.813554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.36477 -38.63609 -37.02493 -36.39768 -33.29569 -31.98283 -30.73730 -28.89575 -28.22208 -25.90377 -24.90839 -24.13941 -21.19108 -20.86769 -20.10234 -19.67503 -19.28127 -17.04861 -16.81558 -16.22888 -15.90938 -15.61407 -15.19953 -14.72423 -14.61787 -14.37545 -13.97891 -13.53780 -13.29467 -13.17890 -12.63853 -12.37784 -11.92989 -11.66561 -11.56523 -11.45789 -11.32695 -11.18324 -11.02248 -10.96451 -10.88961 -10.77240 -10.58060 -10.53614 -10.25084 -9.64598 -9.60463 -9.23669 -9.05514 -8.51759 -8.28678 -8.10893 -6.09571 -4.19745 3.15772 3.20889 3.23308 3.32542 3.33770 4.19270 4.33327 4.42553 4.43334 4.66175 5.03231 5.07381 5.18100 5.21940 5.24881 5.27293 5.28398 5.36262 5.42043 5.44791 5.46614 5.55813 5.60030 5.68811 5.83059 5.90581 6.01775 6.08674 6.16321 6.26552 6.32520 6.46153 6.54944 6.69081 6.85106 7.08299 7.11135 7.28591 7.37917 7.52234 7.78966 8.26145 8.31604 8.81359 8.86289 9.47675 10.97623 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022860 B = 0.003120 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.566085 B = 8973.494918 C = 9577.385472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.165 3.835 11 N -0.703 5.703 12 C 0.504 3.496 13 O -0.537 6.537 14 C 0.045 3.955 15 O -0.360 6.360 16 C 0.066 3.934 17 C -0.091 4.091 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.261 0.739 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.401 0.599 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -9.413 13.470 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.023 3.977 10 C 0.042 3.958 11 N -0.354 5.354 12 C 0.288 3.712 13 O -0.414 6.414 14 C -0.035 4.035 15 O -0.278 6.278 16 C -0.011 4.011 17 C -0.110 4.110 18 C -0.152 4.152 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.235 0.765 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.658 -9.465 13.967 19.441 hybrid contribution 1.105 1.125 -0.484 1.649 sum 10.763 -8.340 13.483 19.162 Atomic orbital electron populations 1.69997 1.05895 1.26811 1.48265 1.25001 0.94829 0.99011 0.94296 0.86570 0.80126 0.83822 0.77669 1.19711 1.21017 1.20924 1.20390 0.92660 0.88569 1.52234 0.92125 1.19050 0.99468 0.93340 0.85889 1.21006 0.83904 0.97994 0.92867 1.45887 1.11471 1.63253 1.14780 1.20114 0.90321 0.78580 0.82188 1.90681 1.30631 1.52611 1.67513 1.22237 0.96198 0.99397 0.85715 1.88022 1.30390 1.83590 1.25836 1.22715 0.88248 0.98598 0.91504 1.21749 0.97362 0.98977 0.92863 1.22380 1.00791 0.98350 0.93688 1.22548 0.95842 1.01001 0.97135 1.22359 0.97122 0.99529 0.97219 1.22136 0.97567 0.99851 0.95987 1.23022 1.00735 0.95584 1.05481 1.22470 0.90805 1.01308 1.03423 0.92879 0.91398 0.94109 0.76519 0.90775 0.90556 0.93434 0.93219 0.90088 0.91447 0.91108 0.91605 0.91665 0.91821 0.91667 0.91479 0.91658 0.90376 0.91706 0.91792 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.14 12.65 55.43 0.70 -23.44 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.74 8.59 -34.44 -0.30 -13.03 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 10 C 0.17 3.75 5.50 -4.04 -0.02 3.73 16 11 N -0.70 -13.53 5.48 -60.29 -0.33 -13.86 16 12 C 0.50 9.65 7.91 -10.98 -0.09 9.56 16 13 O -0.54 -12.66 16.50 -14.35 -0.24 -12.90 16 14 C 0.04 0.64 6.42 36.01 0.23 0.87 16 15 O -0.36 -5.54 9.71 -55.14 -0.54 -6.07 16 16 C 0.07 0.73 4.98 37.15 0.19 0.92 16 17 C -0.09 -0.93 3.19 -89.50 -0.29 -1.21 16 18 C -0.11 -1.22 6.22 -25.03 -0.16 -1.37 16 19 C -0.13 -1.08 6.91 -24.69 -0.17 -1.25 16 20 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 21 C -0.12 -0.92 6.46 -25.61 -0.17 -1.09 16 22 C -0.21 -4.36 9.96 -26.69 -0.27 -4.62 16 23 C -0.14 -3.25 9.14 -26.69 -0.24 -3.49 16 24 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 25 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 26 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 27 H 0.40 6.85 8.33 -40.82 -0.34 6.51 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -30.46 362.36 -9.60 -40.07 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.87 Total: 5.38 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.77 Total: -9.98 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.37 Total: -37.31 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.77 Total: -18.97 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.46 -9.60 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456032148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.314 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds