Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47062 * 299.99372 * 3 2 1 6 6 H 1.48495 * 109.47684 * 59.99361 * 3 2 1 7 7 C 1.37883 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.53047 * 109.45757 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31141 * 178.62957 * 10 9 7 12 12 N 1.46933 * 108.77814 * 54.63308 * 11 10 9 13 13 C 1.34770 * 120.63058 * 126.36761 * 12 11 10 14 14 O 1.21284 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99993 * 179.97438 * 13 12 11 16 16 O 1.42896 * 109.47027 * 179.97438 * 15 13 12 17 17 C 1.42907 * 113.99911 * 180.02562 * 16 15 13 18 18 C 1.55238 * 110.58003 * 264.87695 * 17 16 15 19 19 C 1.54894 * 102.58338 * 203.33572 * 18 17 16 20 20 C 1.54266 * 104.31305 * 37.93170 * 19 18 17 21 21 C 1.53869 * 106.60031 * 336.32486 * 20 19 18 22 22 C 1.46924 * 118.73344 * 306.64284 * 12 11 10 23 23 C 1.52758 * 109.01309 * 53.31215 * 22 12 11 24 24 H 0.96999 * 120.00101 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46003 * 299.97102 * 9 7 2 26 26 H 1.08995 * 109.49815 * 58.67249 * 10 9 7 27 27 H 1.09002 * 109.52268 * 298.59253 * 10 9 7 28 28 H 1.09005 * 109.58776 * 294.84670 * 11 10 9 29 29 H 1.08999 * 109.70475 * 174.49169 * 11 10 9 30 30 H 1.09002 * 109.46845 * 59.99838 * 15 13 12 31 31 H 1.08998 * 109.47032 * 300.00483 * 15 13 12 32 32 H 1.09006 * 110.43477 * 27.46067 * 17 16 15 33 33 H 1.08996 * 110.89448 * 85.05137 * 18 17 16 34 34 H 1.08993 * 110.76342 * 321.56802 * 18 17 16 35 35 H 1.09002 * 110.48891 * 279.18596 * 19 18 17 36 36 H 1.08998 * 110.48494 * 156.67683 * 19 18 17 37 37 H 1.09001 * 110.03084 * 95.60669 * 20 19 18 38 38 H 1.08996 * 110.03108 * 216.98559 * 20 19 18 39 39 H 1.08999 * 110.04012 * 119.28327 * 21 20 19 40 40 H 1.09006 * 110.02998 * 240.67078 * 21 20 19 41 41 H 1.09004 * 109.58643 * 173.14231 * 22 12 11 42 42 H 1.09001 * 109.59227 * 293.56375 * 22 12 11 43 43 H 1.08997 * 109.57116 * 185.55174 * 23 22 12 44 44 H 1.09007 * 109.36298 * 65.48969 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0018 11 6 1.4769 -4.9866 0.0364 12 7 0.5234 -5.0092 -1.0814 13 6 0.5140 -6.0352 -1.9552 14 8 1.2971 -6.9518 -1.8227 15 6 -0.4704 -6.0442 -3.0962 16 8 -0.2840 -7.2265 -3.8768 17 6 -1.1725 -7.3334 -4.9910 18 6 -2.4146 -8.1869 -4.6184 19 6 -2.9038 -8.6913 -5.9988 20 6 -1.6060 -8.9797 -6.7813 21 6 -0.5052 -8.1164 -6.1405 22 6 -0.4153 -3.8890 -1.2318 23 6 0.3712 -2.5796 -1.2491 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5567 0.8906 26 1 2.8877 -3.5910 0.8799 27 1 2.8570 -3.6198 -0.8998 28 1 0.9365 -5.0709 0.9793 29 1 2.1739 -5.8189 -0.0609 30 1 -0.3090 -5.1666 -3.7222 31 1 -1.4858 -6.0261 -2.7001 32 1 -1.4780 -6.3437 -5.3305 33 1 -3.1776 -7.5741 -4.1385 34 1 -2.1311 -9.0234 -3.9797 35 1 -3.4889 -7.9209 -6.5010 36 1 -3.4915 -9.6023 -5.8856 37 1 -1.3475 -10.0355 -6.6995 38 1 -1.7332 -8.7069 -7.8288 39 1 0.2875 -8.7531 -5.7477 40 1 -0.0974 -7.4242 -6.8772 41 1 -0.9648 -3.9959 -2.1671 42 1 -1.1131 -3.8820 -0.3945 43 1 -0.3213 -1.7379 -1.2611 44 1 0.9996 -2.5471 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542904546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -101.925961 kcal Electronic energy + Delta-G solvation = -22474.113165 eV Core-core repulsion = 19197.452025 eV Total energy + Delta-G solvation = -3276.661140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83953 -38.78150 -36.87412 -35.80731 -33.54410 -31.48016 -30.23464 -29.00148 -28.66445 -27.05142 -25.77431 -22.93575 -22.26699 -20.93374 -20.53118 -19.99901 -18.37603 -17.32695 -16.78314 -16.20702 -15.83434 -15.58235 -15.42502 -14.62504 -14.54335 -13.95175 -13.52647 -13.46501 -13.18824 -12.92297 -12.75147 -12.48663 -12.23819 -12.10435 -11.66756 -11.58402 -11.41196 -11.34613 -11.31339 -10.98796 -10.80328 -10.64081 -10.63642 -10.41172 -10.14617 -9.69456 -9.58849 -9.34582 -9.19908 -8.94872 -8.41747 -8.03740 -6.06921 -4.12690 2.93697 3.02869 3.24944 3.33694 3.38006 3.96047 4.36500 4.38276 4.40153 4.69522 4.83899 5.01640 5.16811 5.19427 5.23108 5.26151 5.31467 5.40893 5.44672 5.53266 5.64822 5.69818 5.78315 5.81383 5.91113 5.94793 6.00731 6.03580 6.09553 6.13734 6.24016 6.42364 6.62674 6.85235 6.98947 7.08058 7.15505 7.25401 7.62674 7.87641 7.88013 7.99826 8.36672 8.55144 8.91051 9.52672 10.98720 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.003312 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.426096 B = 8452.332591 C = 8914.091697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.600 5.600 13 C 0.512 3.488 14 O -0.539 6.539 15 C 0.046 3.954 16 O -0.354 6.354 17 C 0.080 3.920 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.123 4.123 22 C 0.102 3.898 23 C -0.126 4.126 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -12.649 -10.028 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.334 5.334 13 C 0.299 3.701 14 O -0.416 6.416 15 C -0.033 4.033 16 O -0.272 6.272 17 C 0.022 3.978 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.020 4.020 23 C -0.164 4.164 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.551 -13.151 -9.913 17.724 hybrid contribution 0.128 1.355 -0.070 1.363 sum -6.423 -11.796 -9.983 16.735 Atomic orbital electron populations 1.69838 1.05846 1.26373 1.51095 1.24963 0.94883 0.99088 0.95078 0.86557 0.80215 0.83798 0.77561 1.19825 1.21061 1.21047 1.21248 0.93022 0.90530 1.50065 0.92616 1.18640 0.92668 0.91796 0.93929 1.22014 0.98920 0.94157 1.01086 1.21702 0.91729 0.99776 0.87632 1.48188 1.36566 1.20777 1.27905 1.20111 0.84675 0.82321 0.82971 1.90663 1.40852 1.35944 1.74182 1.22302 0.98622 0.89296 0.93123 1.88041 1.58101 1.40544 1.40557 1.23151 0.89593 0.98452 0.86638 1.23055 0.97306 1.00542 0.97601 1.22270 0.97214 1.01135 0.95498 1.22079 0.94618 1.00033 0.99226 1.22181 0.98753 0.99056 0.96121 1.21982 0.91741 0.87684 1.00560 1.21962 1.00159 0.94548 0.99737 0.93030 0.95377 0.92037 0.92920 0.92101 0.90278 0.90285 0.90581 0.91359 0.91378 0.90315 0.91519 0.91432 0.91548 0.91654 0.90257 0.91234 0.91778 0.91678 0.87633 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 11.31 55.43 0.63 -23.40 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.43 8.56 -34.44 -0.29 -13.72 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.11 2.09 6.44 -3.71 -0.02 2.07 16 12 N -0.60 -10.82 2.98 -173.03 -0.52 -11.33 16 13 C 0.51 9.34 7.78 -10.99 -0.09 9.25 16 14 O -0.54 -11.69 15.91 -14.36 -0.23 -11.92 16 15 C 0.05 0.66 4.60 36.01 0.17 0.83 16 16 O -0.35 -5.34 9.59 -55.14 -0.53 -5.87 16 17 C 0.08 0.89 3.35 -24.88 -0.08 0.81 16 18 C -0.15 -1.42 6.65 -24.55 -0.16 -1.58 16 19 C -0.12 -0.96 6.82 -25.07 -0.17 -1.13 16 20 C -0.12 -0.97 6.80 -25.62 -0.17 -1.14 16 21 C -0.12 -1.23 6.56 -25.62 -0.17 -1.40 16 22 C 0.10 1.76 6.31 -3.94 -0.02 1.74 16 23 C -0.13 -2.69 5.14 -26.83 -0.14 -2.83 16 24 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 30 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 31 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.91 5.94 -51.93 -0.31 0.61 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.11 2.51 6.03 -51.93 -0.31 2.19 16 44 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -29.86 344.68 -9.72 -39.58 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.66 Total: -0.54 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.59 Total: -7.32 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.11 Total: -34.73 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.76 Total: -17.79 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.86 -9.72 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542904546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.347 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds