Wall clock time and date at job start Tue Mar 31 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00146 * 2 1 4 4 C 1.52998 * 109.47080 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.46983 * 300.00183 * 3 2 1 6 6 O 1.21282 * 119.99899 * 132.52033 * 5 3 2 7 7 N 1.34774 * 120.00043 * 312.52243 * 5 3 2 8 8 C 1.46928 * 120.62892 * 183.40847 * 7 5 3 9 9 C 1.53624 * 108.54276 * 126.36840 * 8 7 5 10 10 C 1.53040 * 109.24441 * 54.85266 * 9 8 7 11 11 C 1.50701 * 109.44783 * 178.49833 * 10 9 8 12 12 H 1.07990 * 120.00213 * 120.06441 * 11 10 9 13 13 C 1.37878 * 119.99648 * 300.06082 * 11 10 9 14 14 N 1.31513 * 120.00561 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99762 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47231 * 89.99864 * 15 13 11 17 17 H 1.48507 * 109.47247 * 210.00279 * 15 13 11 18 18 H 1.48508 * 109.47144 * 329.99927 * 15 13 11 19 19 C 1.53034 * 109.53589 * 298.51187 * 10 9 8 20 20 C 1.46928 * 120.63060 * 3.68188 * 7 5 3 21 21 C 1.52997 * 109.47078 * 59.99935 * 3 2 1 22 22 C 1.52999 * 117.49481 * 133.74782 * 21 3 2 23 23 C 1.52996 * 117.49639 * 65.08834 * 21 3 2 24 24 H 1.09000 * 109.47221 * 299.99925 * 1 2 3 25 25 H 1.09001 * 109.47155 * 59.99901 * 1 2 3 26 26 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47562 * 59.99812 * 4 3 2 28 28 H 1.09006 * 109.46661 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46980 * 299.99629 * 4 3 2 30 30 H 1.08998 * 109.58068 * 246.19743 * 8 7 5 31 31 H 1.09001 * 109.58837 * 6.61928 * 8 7 5 32 32 H 1.08993 * 109.63068 * 294.86000 * 9 8 7 33 33 H 1.09005 * 109.42682 * 174.72181 * 9 8 7 34 34 H 1.08996 * 109.45727 * 58.53304 * 10 9 8 35 35 H 0.96994 * 120.00290 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.50142 * 301.40994 * 19 10 9 37 37 H 1.09010 * 109.49503 * 181.31841 * 19 10 9 38 38 H 1.08996 * 109.58612 * 353.37564 * 20 7 5 39 39 H 1.09002 * 109.58138 * 113.65846 * 20 7 5 40 40 H 1.08996 * 115.55130 * 279.41744 * 21 3 2 41 41 H 1.08999 * 117.50524 * 0.02562 * 22 21 3 42 42 H 1.09004 * 117.49739 * 145.02312 * 22 21 3 43 43 H 1.09002 * 117.50411 * 214.97536 * 23 21 3 44 44 H 1.09000 * 117.50133 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2305 6 8 1.1545 3.1903 -1.1336 7 7 1.6246 1.4588 -2.4386 8 6 1.2653 2.1992 -3.6557 9 6 2.4286 2.0932 -4.6534 10 6 2.7573 0.6173 -4.8900 11 6 3.8736 0.5069 -5.8963 12 1 4.8008 0.0251 -5.6235 13 6 3.7111 1.0210 -7.1652 14 7 2.5822 1.6081 -7.4974 15 14 5.0946 0.8835 -8.4128 16 1 4.9492 -0.3821 -9.1758 17 1 5.0339 2.0353 -9.3483 18 1 6.4008 0.8882 -7.7061 19 6 3.1930 -0.0275 -3.5723 20 6 2.0437 0.0560 -2.5629 21 6 1.5588 2.0647 1.2492 22 6 2.6288 2.8146 2.0453 23 6 2.0179 1.5281 2.6064 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.8568 0.6438 -0.8908 28 1 3.9788 2.1804 -0.0002 29 1 3.8574 0.6435 0.8892 30 1 0.3647 1.7682 -4.0931 31 1 1.0887 3.2459 -3.4079 32 1 3.3046 2.6008 -4.2498 33 1 2.1408 2.5576 -5.5966 34 1 1.8736 0.1050 -5.2703 35 1 2.4681 1.9701 -8.3900 36 1 4.0619 0.5000 -3.1788 37 1 3.4494 -1.0727 -3.7460 38 1 2.3810 -0.3117 -1.5938 39 1 1.2046 -0.5465 -2.9106 40 1 0.5664 2.5121 1.1944 41 1 3.6543 2.7674 1.6788 42 1 2.3402 3.7551 2.5146 43 1 1.3277 1.6227 3.4448 44 1 2.6412 0.6339 2.6094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562280977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:16 Heat of formation + Delta-G solvation = -51.454144 kcal Electronic energy + Delta-G solvation = -23957.378074 eV Core-core repulsion = 20682.905557 eV Total energy + Delta-G solvation = -3274.472518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76165 -38.16539 -36.78050 -36.21185 -33.47523 -31.46337 -30.94572 -29.78067 -26.54176 -26.30392 -25.18792 -23.04948 -22.48305 -22.40081 -20.79001 -19.30690 -18.31524 -17.36903 -16.66592 -16.33318 -15.80432 -15.43713 -14.86222 -14.53836 -14.19541 -14.11102 -13.70334 -13.16013 -12.92498 -12.76570 -12.74715 -12.62094 -12.17807 -11.91055 -11.82713 -11.60763 -11.31792 -11.18552 -11.03485 -10.93777 -10.63436 -10.49243 -10.38523 -10.34178 -10.07952 -10.05224 -9.56145 -9.33950 -8.93279 -8.78023 -8.36133 -7.96590 -6.01179 -4.07969 2.81155 3.28804 3.31657 3.36088 3.38988 3.60154 3.92636 4.41675 4.53142 4.56992 4.83249 4.94023 5.06383 5.27014 5.28456 5.38195 5.45211 5.47683 5.60870 5.67771 5.70204 5.76046 5.78473 5.89066 6.00254 6.02783 6.03909 6.17539 6.19572 6.26287 6.43676 6.51756 6.67563 6.83980 6.99043 7.00391 7.21177 7.35680 7.70232 7.91570 7.95840 8.07448 8.41238 8.52696 8.95616 9.57177 11.04125 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031685 B = 0.004424 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.497436 B = 6327.592183 C = 6376.670961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.135 3.865 4 C -0.148 4.148 5 C 0.492 3.508 6 O -0.549 6.549 7 N -0.587 5.587 8 C 0.105 3.895 9 C -0.120 4.120 10 C 0.048 3.952 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.125 4.125 20 C 0.092 3.908 21 C -0.164 4.164 22 C -0.170 4.170 23 C -0.167 4.167 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -2.330 16.845 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.281 6.281 3 C 0.093 3.907 4 C -0.205 4.205 5 C 0.278 3.722 6 O -0.428 6.428 7 N -0.319 5.319 8 C -0.016 4.016 9 C -0.159 4.159 10 C 0.030 3.970 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.163 4.163 20 C -0.030 4.030 21 C -0.183 4.183 22 C -0.207 4.207 23 C -0.204 4.204 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.121 0.879 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.573 -1.818 16.708 17.002 hybrid contribution 0.421 0.176 -0.932 1.038 sum -2.152 -1.642 15.776 16.007 Atomic orbital electron populations 1.22786 0.80912 1.02810 1.00566 1.87956 1.20126 1.25681 1.94333 1.21127 0.95466 0.82949 0.91166 1.22049 0.90721 1.03521 1.04220 1.20967 0.78879 0.87184 0.85189 1.90646 1.47273 1.18760 1.86153 1.48278 1.64134 1.13338 1.06149 1.22015 0.99222 0.96099 0.84288 1.22070 0.94470 1.01048 0.98298 1.18635 0.96670 0.91451 0.90248 1.21199 1.00562 1.37106 0.96230 0.92719 1.24965 0.95572 0.95159 0.98259 1.69842 1.24465 1.38688 1.19983 0.86626 0.82638 0.77578 0.81336 1.20731 1.21271 1.19985 1.22039 0.96273 1.00781 0.97228 1.22300 0.98216 0.80684 1.01794 1.22457 1.00624 1.03839 0.91337 1.23085 0.98463 0.95978 1.03151 1.22934 1.03803 0.98053 0.95648 0.93544 0.93798 0.89284 0.90195 0.90220 0.90673 0.92372 0.90806 0.94391 0.87929 0.95577 0.92979 0.93021 0.92160 0.88104 0.92348 0.87223 0.88001 0.88731 0.88866 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.23 101.05 1.03 1.33 16 2 O -0.36 -4.80 7.48 -35.23 -0.26 -5.06 16 3 C 0.14 1.90 0.52 -91.77 -0.05 1.85 16 4 C -0.15 -1.87 7.21 37.16 0.27 -1.60 16 5 C 0.49 8.73 5.24 -10.98 -0.06 8.67 16 6 O -0.55 -11.32 15.35 5.56 0.09 -11.23 16 7 N -0.59 -10.78 2.91 -172.50 -0.50 -11.28 16 8 C 0.11 2.15 6.45 -3.48 -0.02 2.12 16 9 C -0.12 -2.81 5.17 -26.39 -0.14 -2.94 16 10 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 11 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.88 11.30 55.43 0.63 -24.25 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 19 C -0.13 -2.46 5.22 -26.62 -0.14 -2.60 16 20 C 0.09 1.56 4.92 -3.71 -0.02 1.55 16 21 C -0.16 -2.06 3.43 -90.62 -0.31 -2.37 16 22 C -0.17 -1.83 9.66 -26.69 -0.26 -2.09 16 23 C -0.17 -1.64 9.85 -26.69 -0.26 -1.91 16 24 H 0.05 0.50 6.99 -51.93 -0.36 0.14 16 25 H 0.04 0.59 7.10 -51.93 -0.37 0.22 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.08 5.90 -51.93 -0.31 0.77 16 28 H 0.08 0.99 6.74 -51.93 -0.35 0.64 16 29 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.54 7.02 -51.93 -0.36 1.17 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 2.67 6.03 -51.93 -0.31 2.35 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.05 1.02 7.79 -51.93 -0.40 0.62 16 37 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.10 1.53 3.63 -51.93 -0.19 1.34 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.11 1.51 7.63 -51.93 -0.40 1.12 16 41 H 0.10 1.05 5.89 -51.93 -0.31 0.74 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.93 7.29 -51.93 -0.38 0.55 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -29.38 331.87 -7.63 -37.00 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.02 Total: 3.29 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.53 Total: -9.42 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.12 Total: -35.54 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.18 Total: -16.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.38 -7.63 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562280977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds