Wall clock time and date at job start Tue Mar 31 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47033 * 180.02562 * 15 14 12 17 17 C 1.53177 * 109.54446 * 294.55663 * 16 15 14 18 18 C 1.53091 * 109.16285 * 183.15119 * 17 16 15 19 19 O 1.42905 * 109.41302 * 57.60907 * 18 17 16 20 20 C 1.42894 * 114.10186 * 298.83921 * 19 18 17 21 21 C 1.53099 * 109.41199 * 61.15701 * 20 19 18 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.09003 * 109.47333 * 300.00142 * 15 14 12 31 31 H 1.09002 * 109.47261 * 60.00428 * 15 14 12 32 32 H 1.08998 * 109.54163 * 54.82908 * 16 15 14 33 33 H 1.08997 * 109.52456 * 303.05545 * 17 16 15 34 34 H 1.09000 * 109.51716 * 63.24758 * 17 16 15 35 35 H 1.08997 * 109.48203 * 297.62956 * 18 17 16 36 36 H 1.09003 * 109.48171 * 177.58965 * 18 17 16 37 37 H 1.08997 * 109.48310 * 301.17983 * 20 19 18 38 38 H 1.09002 * 109.49628 * 181.14722 * 20 19 18 39 39 H 1.09004 * 109.51973 * 182.48724 * 21 20 19 40 40 H 1.08997 * 109.52149 * 62.30087 * 21 20 19 41 41 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 42 42 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 43 43 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 44 44 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 6 3.0416 -4.6301 5.6206 16 6 4.3357 -4.9357 6.3775 17 6 5.0949 -6.0576 5.6624 18 6 6.3474 -6.4102 6.4689 19 8 5.9680 -6.7924 7.7927 20 6 5.2963 -5.7665 8.5262 21 6 4.0015 -5.3879 7.8023 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 2.4567 -3.9010 6.1814 31 1 2.4637 -5.5469 5.5035 32 1 4.9561 -4.0403 6.4153 33 1 4.4549 -6.9361 5.5809 34 1 5.3851 -5.7235 4.6663 35 1 7.0058 -5.5428 6.5157 36 1 6.8691 -7.2373 5.9873 37 1 5.9409 -4.8907 8.5999 38 1 5.0606 -6.1295 9.5267 39 1 3.5098 -4.5749 8.3366 40 1 3.3393 -6.2528 7.7640 41 1 2.3246 -3.3504 -1.6826 42 1 1.5428 -4.6177 -0.5940 43 1 -0.6578 -3.3605 -0.7110 44 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565811407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:04 Heat of formation + Delta-G solvation = -90.765064 kcal Electronic energy + Delta-G solvation = -22038.536211 eV Core-core repulsion = 18762.359044 eV Total energy + Delta-G solvation = -3276.177167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78623 -38.96944 -36.75354 -35.43701 -33.27023 -31.98988 -31.45783 -30.95140 -27.02966 -25.69543 -24.74428 -23.75581 -22.02915 -21.15564 -20.15305 -19.69145 -19.18797 -16.86393 -16.29711 -16.22690 -15.88679 -15.54147 -15.01499 -14.91821 -14.70423 -14.47386 -14.00210 -13.82398 -13.26554 -13.01401 -12.67636 -12.43710 -12.17077 -12.01077 -11.75190 -11.61128 -11.52397 -11.23089 -10.99717 -10.97956 -10.87205 -10.57363 -10.44915 -10.44038 -10.25742 -9.70322 -9.62346 -9.25823 -9.06236 -8.51479 -8.27617 -8.09562 -6.09875 -4.20118 3.22011 3.24380 3.30668 3.31422 3.65476 3.86096 4.32454 4.49715 4.55891 4.67322 4.79233 4.96987 5.12679 5.15793 5.18060 5.23836 5.28133 5.33108 5.41960 5.47802 5.54562 5.63456 5.74409 5.78013 5.84935 5.94347 6.00870 6.05669 6.23721 6.32298 6.36037 6.46189 6.55194 6.68559 6.86864 6.96458 7.10262 7.28279 7.38009 7.51588 7.78197 8.29796 8.31796 8.80745 8.89299 9.47102 10.97266 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.003225 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.797611 B = 8680.939695 C = 9084.481824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.501 3.499 13 O -0.561 6.561 14 C -0.142 4.142 15 C -0.095 4.095 16 C -0.091 4.091 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.061 3.939 21 C -0.151 4.151 22 C -0.211 4.211 23 C -0.143 4.143 24 H 0.262 0.738 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.400 0.600 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.956 -9.574 11.418 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.040 3.960 11 N -0.354 5.354 12 C 0.286 3.714 13 O -0.440 6.440 14 C -0.182 4.182 15 C -0.133 4.133 16 C -0.109 4.109 17 C -0.192 4.192 18 C -0.017 4.017 19 O -0.305 6.305 20 C -0.016 4.016 21 C -0.189 4.189 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.234 0.766 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.032 -9.763 11.907 18.378 hybrid contribution 0.675 1.433 -0.527 1.670 sum 10.708 -8.329 11.380 17.707 Atomic orbital electron populations 1.69979 1.05896 1.27009 1.48159 1.24992 0.94826 0.98974 0.94298 0.86683 0.79657 0.83171 0.78621 1.20268 1.21249 1.20158 1.20313 0.92582 0.88620 1.52405 0.92264 1.19034 0.99344 0.93267 0.85961 1.20976 0.84285 0.97816 0.92967 1.46028 1.11181 1.62859 1.15309 1.20598 0.91016 0.77714 0.82023 1.90648 1.31263 1.54133 1.67980 1.21708 0.96636 1.02769 0.97061 1.21332 0.96072 1.01951 0.93935 1.21248 0.97136 0.97993 0.94550 1.22324 0.97743 0.99460 0.99649 1.22599 0.95648 1.00452 0.82978 1.87916 1.76928 1.39348 1.26319 1.22582 0.92649 0.91182 0.95203 1.22244 0.98314 1.02237 0.96119 1.23017 1.00727 0.95568 1.05521 1.22467 0.90782 1.01326 1.03515 0.92786 0.91587 0.94308 0.76570 0.89312 0.89256 0.91096 0.91187 0.90998 0.90869 0.90478 0.93276 0.89016 0.93313 0.89062 0.90736 0.90881 0.90405 0.91764 0.91850 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 12.65 55.43 0.70 -23.46 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.50 -12.78 8.59 -34.44 -0.30 -13.07 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 10 C 0.16 3.68 5.50 -4.05 -0.02 3.66 16 11 N -0.71 -13.40 5.48 -60.30 -0.33 -13.73 16 12 C 0.50 9.02 7.83 -10.98 -0.09 8.93 16 13 O -0.56 -12.24 15.98 5.56 0.09 -12.15 16 14 C -0.14 -1.78 5.46 -27.89 -0.15 -1.94 16 15 C -0.09 -1.14 3.98 -26.73 -0.11 -1.24 16 16 C -0.09 -0.86 2.27 -90.44 -0.21 -1.06 16 17 C -0.15 -1.36 5.10 -26.59 -0.14 -1.49 16 18 C 0.06 0.51 6.84 37.20 0.25 0.76 16 19 O -0.39 -4.02 10.76 -35.23 -0.38 -4.40 16 20 C 0.06 0.51 6.84 37.21 0.25 0.77 16 21 C -0.15 -1.35 5.42 -26.59 -0.14 -1.49 16 22 C -0.21 -4.38 9.96 -26.69 -0.27 -4.64 16 23 C -0.14 -3.28 9.14 -26.69 -0.24 -3.52 16 24 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 25 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 26 H 0.04 0.88 8.09 -51.92 -0.42 0.46 16 27 H 0.40 6.90 8.33 -40.82 -0.34 6.56 16 28 H 0.09 0.94 6.66 -51.93 -0.35 0.59 16 29 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.61 6.75 -51.93 -0.35 0.26 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -29.85 355.74 -8.82 -38.66 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.76 Total: 6.55 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.47 Total: -12.16 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.37 Total: -37.19 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.29 Total: -16.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.85 -8.82 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565811407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.102 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds