Wall clock time and date at job start Tue Mar 31 2020 07:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.47109 * 2 1 4 4 C 1.50696 * 109.47208 * 120.00229 * 2 1 3 5 5 O 1.21274 * 120.00092 * 107.27432 * 4 2 1 6 6 N 1.34775 * 120.00123 * 287.27028 * 4 2 1 7 7 C 1.46935 * 120.62907 * 356.31844 * 6 4 2 8 8 C 1.53189 * 108.89422 * 126.29922 * 7 6 4 9 9 C 1.53353 * 109.14774 * 54.57643 * 8 7 6 10 10 C 1.52999 * 109.41934 * 178.67836 * 9 8 7 11 11 C 1.50708 * 109.46836 * 295.12894 * 10 9 8 12 12 H 1.07999 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99634 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99336 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47616 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47022 * 120.00216 * 15 13 11 18 18 H 1.48500 * 109.46811 * 239.99780 * 15 13 11 19 19 C 1.53036 * 109.60940 * 298.71424 * 9 8 7 20 20 C 1.46920 * 120.63602 * 176.30124 * 6 4 2 21 21 C 1.53001 * 109.47202 * 240.00258 * 2 1 3 22 22 C 1.52998 * 117.50243 * 128.61915 * 21 2 1 23 23 C 1.52996 * 60.00090 * 252.51208 * 22 21 2 24 24 H 1.08996 * 109.46794 * 299.99877 * 1 2 3 25 25 H 1.08997 * 109.47237 * 60.00146 * 1 2 3 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 0.96698 * 113.99870 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.58943 * 246.15902 * 7 6 4 29 29 H 1.09000 * 109.58465 * 6.44213 * 7 6 4 30 30 H 1.08993 * 109.49837 * 174.65711 * 8 7 6 31 31 H 1.09005 * 109.49801 * 294.75944 * 8 7 6 32 32 H 1.08997 * 109.42200 * 58.75508 * 9 8 7 33 33 H 1.08995 * 109.47163 * 55.12425 * 10 9 8 34 34 H 1.08994 * 109.47436 * 175.12984 * 10 9 8 35 35 H 0.97001 * 119.99295 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.50129 * 301.41917 * 19 9 8 37 37 H 1.08998 * 109.52995 * 181.34127 * 19 9 8 38 38 H 1.09002 * 109.58244 * 353.41447 * 20 6 4 39 39 H 1.09000 * 109.59212 * 113.69605 * 20 6 4 40 40 H 1.09002 * 115.54950 * 274.33217 * 21 2 1 41 41 H 1.09009 * 117.49484 * 359.97438 * 22 21 2 42 42 H 1.08992 * 117.50394 * 145.01971 * 22 21 2 43 43 H 1.09003 * 117.50296 * 252.50737 * 23 22 21 44 44 H 1.09004 * 117.52015 * 107.48164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5285 -1.8128 1.1340 6 7 1.9303 -0.1207 2.4380 7 6 1.4059 1.2463 2.5615 8 6 0.2531 1.2461 3.5703 9 6 0.7395 0.6345 4.8899 10 6 -0.3980 0.6613 5.9128 11 6 -0.7483 2.0908 6.2371 12 1 -0.2134 2.8993 5.7609 13 6 -1.7524 2.3665 7.1410 14 7 -2.4040 1.3820 7.7204 15 14 -2.1860 4.1383 7.5434 16 1 -1.3118 5.0512 6.7641 17 1 -3.6059 4.3927 7.1909 18 1 -1.9855 4.3794 8.9949 19 6 1.1791 -0.8122 4.6542 20 6 2.3409 -0.8325 3.6559 21 6 2.0401 -0.7212 -1.2493 22 6 3.0741 0.0052 -2.1117 23 6 1.6357 -0.1494 -2.6096 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9703 1.4236 -0.0004 28 1 2.1964 1.9108 2.9102 29 1 1.0430 1.5874 1.5920 30 1 -0.0812 2.2693 3.7411 31 1 -0.5735 0.6534 3.1781 32 1 1.5821 1.2130 5.2686 33 1 -1.2715 0.1584 5.4980 34 1 -0.0815 0.1497 6.8216 35 1 -3.1106 1.5760 8.3560 36 1 0.3438 -1.3855 4.2520 37 1 1.5022 -1.2531 5.5972 38 1 2.5926 -1.8639 3.4089 39 1 3.2093 -0.3390 4.0924 40 1 2.1267 -1.8044 -1.1643 41 1 3.3908 0.9972 -1.7893 42 1 3.8416 -0.6000 -2.5942 43 1 1.4567 -0.8565 -3.4197 44 1 1.0061 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567946222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:58 Heat of formation + Delta-G solvation = -71.608227 kcal Electronic energy + Delta-G solvation = -23301.531244 eV Core-core repulsion = 20026.184779 eV Total energy + Delta-G solvation = -3275.346464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80126 -38.43488 -37.15919 -35.48622 -33.87051 -32.15682 -31.44984 -30.36715 -28.06297 -25.42080 -24.29607 -22.88478 -22.53782 -22.14728 -20.68750 -19.76263 -18.96128 -17.73669 -16.90921 -16.31725 -15.97411 -15.35192 -14.86093 -14.53746 -14.27447 -13.82524 -13.71169 -13.48926 -13.25194 -12.80961 -12.66466 -12.56717 -12.36500 -12.16119 -11.80325 -11.76460 -11.62431 -11.19499 -11.00290 -10.88461 -10.73782 -10.71723 -10.56467 -10.44713 -10.29238 -10.08632 -9.69187 -9.37200 -9.11389 -8.95392 -8.37320 -8.33364 -6.00631 -4.02484 2.55947 3.04777 3.29639 3.37713 3.40755 3.55697 3.87960 4.34927 4.40853 4.44806 4.66926 4.84305 5.09404 5.17755 5.30678 5.34918 5.39771 5.42433 5.50485 5.56246 5.59110 5.61169 5.70077 5.71797 5.88985 5.91818 5.98258 6.02351 6.04261 6.18302 6.36814 6.40884 6.54164 6.68390 6.97211 7.00275 7.11735 7.18610 7.57882 7.66620 7.80967 7.99253 8.20889 8.41846 9.04293 9.61451 11.10685 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.003983 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.801439 B = 7028.131147 C = 7554.698968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.153 3.847 3 O -0.541 6.541 4 C 0.491 3.509 5 O -0.547 6.547 6 N -0.591 5.591 7 C 0.086 3.914 8 C -0.120 4.120 9 C -0.081 4.081 10 C 0.027 3.973 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.128 4.128 20 C 0.108 3.892 21 C -0.171 4.171 22 C -0.177 4.177 23 C -0.166 4.166 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.378 0.622 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -1.896 -17.571 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.109 3.891 3 O -0.349 6.349 4 C 0.278 3.722 5 O -0.425 6.425 6 N -0.324 5.324 7 C -0.035 4.035 8 C -0.158 4.158 9 C -0.100 4.100 10 C -0.010 4.010 11 C -0.553 4.553 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.166 4.166 20 C -0.014 4.014 21 C -0.190 4.190 22 C -0.214 4.214 23 C -0.203 4.203 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.228 0.772 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.639 -2.371 -17.478 19.640 hybrid contribution 0.239 0.810 0.515 0.989 sum 8.878 -1.561 -16.963 19.209 Atomic orbital electron populations 1.21889 0.90201 1.03518 1.04272 1.20770 0.96331 0.81549 0.90423 1.86581 1.27242 1.24786 1.96269 1.21195 0.79182 0.86520 0.85317 1.90652 1.45020 1.20751 1.86126 1.48192 1.61899 1.16426 1.05839 1.22433 0.97237 0.81198 1.02665 1.21985 0.96212 1.02873 0.94720 1.21250 0.99983 0.92748 0.95996 1.19130 0.92069 0.96983 0.92808 1.21279 1.17687 0.92455 1.23904 0.92532 1.25026 0.96393 0.96880 0.96199 1.69976 1.23584 1.30944 1.28993 0.86593 0.78228 0.85377 0.78145 1.19732 1.21097 1.21111 1.22012 0.97232 0.99340 0.98040 1.21704 0.97412 0.97657 0.84588 1.22798 1.04646 1.00774 0.90783 1.22963 0.92789 1.01951 1.03699 1.22924 0.97916 1.03187 0.96288 0.90345 0.90584 0.90551 0.77186 0.91939 0.87050 0.89757 0.92474 0.92433 0.96662 0.96667 0.93120 0.92145 0.91169 0.89893 0.91844 0.85950 0.88372 0.88741 0.88773 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.39 37.16 0.31 -1.26 16 2 C 0.15 1.75 0.77 -91.77 -0.07 1.68 16 3 O -0.54 -5.47 9.20 -35.23 -0.32 -5.79 16 4 C 0.49 7.15 6.67 -10.99 -0.07 7.07 16 5 O -0.55 -9.49 15.06 5.56 0.08 -9.41 16 6 N -0.59 -8.62 2.97 -172.77 -0.51 -9.14 16 7 C 0.09 1.21 5.06 -3.71 -0.02 1.19 16 8 C -0.12 -2.07 5.13 -26.45 -0.14 -2.21 16 9 C -0.08 -1.57 2.10 -90.42 -0.19 -1.76 16 10 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 11 C -0.51 -13.93 8.39 -34.43 -0.29 -14.22 16 12 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 20 C 0.11 1.64 6.42 -3.71 -0.02 1.62 16 21 C -0.17 -1.79 4.87 -90.62 -0.44 -2.23 16 22 C -0.18 -1.50 9.74 -26.73 -0.26 -1.76 16 23 C -0.17 -1.41 9.67 -26.73 -0.26 -1.67 16 24 H 0.08 0.95 5.93 -51.93 -0.31 0.64 16 25 H 0.08 0.73 7.29 -51.93 -0.38 0.35 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.38 2.97 7.56 45.56 0.34 3.32 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 1.43 3.63 -51.93 -0.19 1.24 16 30 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 31 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.29 7.03 -51.93 -0.36 0.92 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 1.48 7.33 -51.93 -0.38 1.10 16 41 H 0.10 0.73 6.38 -51.92 -0.33 0.40 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.83 7.61 -51.93 -0.39 0.44 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -30.91 338.12 -8.26 -39.17 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.50 Total: 3.54 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.81 Total: -13.85 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.24 Total: -15.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.91 -8.26 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567946222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.440 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds