Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48502 * 109.46648 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47340 * 300.00257 * 3 2 1 6 6 H 1.48500 * 109.46959 * 60.00275 * 3 2 1 7 7 C 1.37872 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00021 * 359.71966 * 7 2 1 10 10 C 1.53005 * 109.47023 * 180.28063 * 9 7 2 11 11 C 1.50697 * 109.46818 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00138 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99612 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.65038 * 359.69132 * 13 11 10 15 15 C 1.55123 * 104.72376 * 155.81996 * 14 13 11 16 16 C 1.55160 * 101.48765 * 37.29221 * 15 14 13 17 17 C 1.47029 * 125.64741 * 180.02562 * 13 11 10 18 18 H 1.08995 * 109.88036 * 300.43494 * 17 13 11 19 19 C 1.52999 * 109.88135 * 61.44847 * 17 13 11 20 20 H 1.08996 * 109.52544 * 297.55352 * 19 17 13 21 21 C 1.53178 * 109.51930 * 177.36221 * 19 17 13 22 22 C 1.53182 * 109.03509 * 183.11170 * 21 19 17 23 23 C 1.53091 * 109.15955 * 56.98340 * 22 21 19 24 24 O 1.42894 * 109.41979 * 302.39029 * 23 22 21 25 25 C 1.42903 * 114.09783 * 61.15648 * 24 23 22 26 26 H 0.96995 * 120.00258 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46961 * 300.27730 * 9 7 2 28 28 H 1.08994 * 109.46978 * 60.28250 * 9 7 2 29 29 H 1.09002 * 109.46540 * 299.99960 * 10 9 7 30 30 H 1.09000 * 109.47327 * 59.99872 * 10 9 7 31 31 H 1.09002 * 110.36911 * 274.74647 * 14 13 11 32 32 H 1.08999 * 110.36866 * 37.06685 * 14 13 11 33 33 H 1.09006 * 111.19606 * 279.19084 * 15 14 13 34 34 H 1.09005 * 110.94415 * 155.28830 * 15 14 13 35 35 H 1.08999 * 110.72202 * 205.96965 * 16 15 14 36 36 H 1.09010 * 110.86829 * 82.77057 * 16 15 14 37 37 H 1.08993 * 109.54817 * 302.98294 * 21 19 17 38 38 H 1.09002 * 109.54245 * 63.25291 * 21 19 17 39 39 H 1.09002 * 109.52245 * 297.07734 * 22 21 19 40 40 H 1.08998 * 109.56954 * 176.91974 * 22 21 19 41 41 H 1.09002 * 109.47645 * 182.40629 * 23 22 21 42 42 H 1.09003 * 109.48164 * 62.37565 * 23 22 21 43 43 H 1.09002 * 109.48476 * 178.86064 * 25 24 23 44 44 H 1.08996 * 109.47946 * 58.82802 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 0.0053 10 6 2.2453 -3.6621 0.0104 11 6 1.4918 -4.9671 0.0169 12 8 0.2790 -4.9671 0.0178 13 7 2.1657 -6.1343 0.0217 14 6 3.6328 -6.2794 0.0148 15 6 3.8938 -7.6758 0.6380 16 6 2.7129 -8.4985 0.0582 17 6 1.5595 -7.4738 0.0276 18 1 0.9339 -7.5936 0.9121 19 6 0.7180 -7.6697 -1.2351 20 1 -0.0972 -6.9462 -1.2455 21 6 0.1442 -9.0898 -1.2525 22 6 -0.6309 -9.2995 -2.5570 23 6 0.3002 -9.0345 -3.7429 24 8 0.8232 -7.7080 -3.6492 25 6 1.5971 -7.4677 -2.4721 26 1 -0.4850 0.8400 0.0004 27 1 0.6244 -2.5529 0.8955 28 1 0.6244 -2.5608 -0.8844 29 1 2.8719 -3.6082 -0.8798 30 1 2.8720 -3.6004 0.9001 31 1 4.0132 -6.2399 -1.0059 32 1 4.0939 -5.5009 0.6226 33 1 3.8456 -7.6369 1.7263 34 1 4.8507 -8.0781 0.3056 35 1 2.4682 -9.3355 0.7122 36 1 2.9421 -8.8509 -0.9476 37 1 0.9577 -9.8126 -1.1916 38 1 -0.5273 -9.2222 -0.4042 39 1 -1.4741 -8.6096 -2.5946 40 1 -0.9970 -10.3251 -2.6033 41 1 -0.2573 -9.1405 -4.6735 42 1 1.1216 -9.7509 -3.7274 43 1 1.9739 -6.4450 -2.4872 44 1 2.4353 -8.1636 -2.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572844758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -100.950775 kcal Electronic energy + Delta-G solvation = -23174.555211 eV Core-core repulsion = 19897.936358 eV Total energy + Delta-G solvation = -3276.618853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56730 -38.79983 -37.14377 -34.00989 -33.40863 -31.88936 -31.46750 -30.60847 -27.85109 -25.82790 -25.11224 -24.03582 -22.64813 -21.89814 -20.90409 -19.42142 -18.38929 -17.00946 -16.77904 -16.17202 -15.73831 -15.58188 -14.90824 -14.77446 -14.63397 -14.40863 -14.11997 -13.68334 -13.35197 -12.94803 -12.75825 -12.56851 -12.37358 -12.19165 -12.01199 -11.81893 -11.47735 -11.23108 -11.06512 -11.06005 -10.93236 -10.77350 -10.65060 -10.55358 -10.29035 -9.92734 -9.61387 -9.43517 -9.11917 -8.94799 -8.37485 -8.28520 -5.93537 -3.97833 3.24231 3.28688 3.34368 3.41527 3.44854 3.84158 4.38999 4.45554 4.50151 4.63746 4.74515 4.77841 4.80616 4.92296 5.08491 5.16606 5.22688 5.34649 5.39550 5.41509 5.47728 5.53015 5.57453 5.63539 5.67627 5.71424 5.78199 5.82861 5.93695 5.98707 6.03462 6.13709 6.23656 6.26725 6.37760 6.65523 6.93185 7.17359 7.77433 7.89258 7.89533 8.10087 8.41293 8.78819 9.10838 9.65649 11.17510 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.004066 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.595440 B = 6884.037778 C = 7520.288599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.526 3.474 12 O -0.528 6.528 13 N -0.628 5.628 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.133 4.133 17 C 0.145 3.855 18 H 0.074 0.926 19 C -0.135 4.135 20 H 0.097 0.903 21 C -0.113 4.113 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.380 6.380 25 C 0.072 3.928 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -22.702 -2.298 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.317 3.683 12 O -0.403 6.403 13 N -0.365 5.365 14 C -0.023 4.023 15 C -0.171 4.171 16 C -0.171 4.171 17 C 0.041 3.959 18 H 0.092 0.908 19 C -0.155 4.155 20 H 0.115 0.885 21 C -0.151 4.151 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.299 6.299 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.089 -22.326 -2.430 23.269 hybrid contribution 0.486 0.695 0.280 0.893 sum 6.575 -21.632 -2.149 22.711 Atomic orbital electron populations 1.70008 1.06057 1.26441 1.50316 1.25020 0.94806 0.99204 0.95328 0.86544 0.80012 0.83892 0.77575 1.19749 1.21005 1.21043 1.21251 0.92930 0.90992 1.51218 0.92592 1.18912 0.93183 0.89375 0.98606 1.21855 1.00646 0.91675 1.02250 1.21314 0.88179 0.84397 0.74411 1.90666 1.14226 1.86895 1.48522 1.48839 1.06706 1.05128 1.75822 1.22323 0.81520 0.97700 1.00807 1.22812 0.98445 0.94850 1.00974 1.22811 0.94756 0.97535 1.01979 1.21409 0.94301 0.82810 0.97348 0.90845 1.22128 1.00070 0.98223 0.95065 0.88476 1.21598 0.99710 0.96045 0.97797 1.22184 0.99574 1.02141 0.95484 1.22551 0.96132 0.84589 0.98446 1.87984 1.69928 1.30202 1.41774 1.22627 0.92199 1.01739 0.83911 0.93023 0.95874 0.95795 0.90387 0.90417 0.91603 0.90155 0.90553 0.90060 0.90338 0.90318 0.91786 0.91392 0.90858 0.91052 0.89167 0.93567 0.88934 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.12 -2.60 4.64 -27.88 -0.13 -2.73 16 11 C 0.53 10.47 7.64 -10.99 -0.08 10.39 16 12 O -0.53 -12.71 15.03 5.56 0.08 -12.63 16 13 N -0.63 -9.26 2.28 -162.88 -0.37 -9.63 16 14 C 0.10 1.08 6.70 -2.41 -0.02 1.07 16 15 C -0.13 -1.07 7.10 -24.46 -0.17 -1.25 16 16 C -0.13 -1.13 5.15 -24.90 -0.13 -1.26 16 17 C 0.15 1.82 2.68 -66.95 -0.18 1.64 16 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.14 -1.78 2.11 -90.48 -0.19 -1.97 16 20 H 0.10 1.70 6.90 -51.93 -0.36 1.34 16 21 C -0.11 -1.15 5.12 -26.54 -0.14 -1.29 16 22 C -0.16 -1.53 6.14 -26.59 -0.16 -1.69 16 23 C 0.06 0.62 6.84 37.20 0.25 0.87 16 24 O -0.38 -5.43 10.77 -35.23 -0.38 -5.80 16 25 C 0.07 0.94 5.71 37.21 0.21 1.15 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.62 5.47 -51.92 -0.28 0.33 16 37 H 0.06 0.53 6.94 -51.93 -0.36 0.17 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.39 7.65 -51.93 -0.40 1.00 16 44 H 0.05 0.52 6.04 -51.93 -0.31 0.21 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -34.56 341.02 -8.62 -43.18 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.54 Total: -2.06 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.26 Total: -8.01 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.36 Total: -36.69 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.30 Total: -18.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.56 -8.62 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572844758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.774 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds