Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99850 * 2 1 4 4 H 1.48500 * 109.46876 * 90.00274 * 3 2 1 5 5 H 1.48505 * 109.46876 * 210.00239 * 3 2 1 6 6 H 1.48497 * 109.47078 * 329.99990 * 3 2 1 7 7 C 1.37870 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46917 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46750 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00183 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.47433 * 125.64576 * 354.61373 * 13 11 10 15 15 C 1.54693 * 104.94117 * 204.07493 * 14 13 11 16 16 C 1.55164 * 101.67448 * 323.27781 * 15 14 13 17 17 C 1.47016 * 125.64980 * 174.92140 * 13 11 10 18 18 H 1.09007 * 109.88590 * 59.49012 * 17 13 11 19 19 C 1.52995 * 109.88383 * 298.32221 * 17 13 11 20 20 H 1.08992 * 109.52151 * 62.55480 * 19 17 13 21 21 C 1.53178 * 109.52145 * 302.42813 * 19 17 13 22 22 C 1.53184 * 109.03603 * 183.11328 * 21 19 17 23 23 C 1.53093 * 109.16051 * 56.97981 * 22 21 19 24 24 O 1.42901 * 109.41759 * 302.38977 * 23 22 21 25 25 C 1.42909 * 114.09501 * 61.16136 * 24 23 22 26 26 H 0.97003 * 120.00182 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46672 * 299.99597 * 9 7 2 28 28 H 1.08991 * 109.46906 * 59.99995 * 9 7 2 29 29 H 1.09001 * 109.47098 * 300.00084 * 10 9 7 30 30 H 1.09006 * 109.46938 * 59.99943 * 10 9 7 31 31 H 1.08998 * 110.36644 * 323.00143 * 14 13 11 32 32 H 1.08999 * 110.36445 * 85.32863 * 14 13 11 33 33 H 1.08994 * 111.09945 * 205.10984 * 15 14 13 34 34 H 1.08994 * 110.84908 * 81.33505 * 15 14 13 35 35 H 1.09000 * 110.72113 * 276.97194 * 16 15 14 36 36 H 1.09000 * 110.86864 * 153.77183 * 16 15 14 37 37 H 1.09004 * 109.54265 * 302.98083 * 21 19 17 38 38 H 1.08994 * 109.54499 * 63.25091 * 21 19 17 39 39 H 1.09001 * 109.52278 * 176.88233 * 22 21 19 40 40 H 1.08994 * 109.51992 * 297.01433 * 22 21 19 41 41 H 1.09002 * 109.48254 * 62.37584 * 23 22 21 42 42 H 1.09003 * 109.48020 * 182.39928 * 23 22 21 43 43 H 1.09006 * 109.47857 * 178.86057 * 25 24 23 44 44 H 1.08998 * 109.48140 * 58.82773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9671 -0.0033 12 8 0.2789 -4.9671 -0.0033 13 7 2.1656 -6.1343 -0.0037 14 6 3.6282 -6.2820 -0.1161 15 6 3.8430 -7.7066 -0.6795 16 6 2.7130 -8.4986 0.0300 17 6 1.5634 -7.4714 0.1015 18 1 0.8708 -7.6322 -0.7247 19 6 0.8268 -7.6068 1.4356 20 1 0.0126 -6.8835 1.4772 21 6 1.8022 -7.3464 2.5876 22 6 1.0733 -7.5610 3.9177 23 6 0.4984 -8.9794 3.9525 24 8 -0.3759 -9.1652 2.8376 25 6 0.2615 -9.0236 1.5664 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5574 0.8880 28 1 0.6247 -2.5562 -0.8919 29 1 2.8719 -3.6035 -0.8927 30 1 2.8719 -3.6051 0.8873 31 1 4.0330 -5.5376 -0.8016 32 1 4.0952 -6.1899 0.8644 33 1 4.8239 -8.0938 -0.4037 34 1 3.7098 -7.7202 -1.7611 35 1 3.0231 -8.8005 1.0304 36 1 2.4183 -9.3668 -0.5593 37 1 2.6427 -8.0368 2.5169 38 1 2.1658 -6.3204 2.5326 39 1 1.7743 -7.4317 4.7423 40 1 0.2641 -6.8367 4.0105 41 1 1.3121 -9.7028 3.9009 42 1 -0.0579 -9.1236 4.8788 43 1 -0.4656 -9.1994 0.7735 44 1 1.0721 -9.7475 1.4835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572844759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -101.221380 kcal Electronic energy + Delta-G solvation = -23174.271019 eV Core-core repulsion = 19897.640432 eV Total energy + Delta-G solvation = -3276.630587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.56584 -38.84399 -37.17248 -33.82745 -33.40170 -32.13018 -31.43884 -30.65622 -27.82678 -25.84016 -25.10857 -23.98245 -22.61844 -21.89382 -21.02905 -19.42035 -18.35266 -16.96392 -16.66930 -16.13863 -15.93154 -15.63780 -14.96434 -14.84767 -14.56609 -14.41996 -14.07024 -13.76747 -13.40156 -12.95405 -12.69543 -12.61405 -12.31670 -12.10740 -11.98097 -11.85896 -11.45845 -11.32807 -11.09090 -10.98122 -10.92670 -10.81426 -10.59366 -10.58702 -10.17425 -9.93742 -9.64415 -9.55883 -9.14208 -8.95774 -8.36831 -8.29462 -5.95118 -3.99643 3.22963 3.28748 3.33601 3.39828 3.42442 3.78738 4.37671 4.45886 4.48548 4.63580 4.77330 4.82030 4.86893 4.93586 5.09721 5.21133 5.25022 5.27787 5.39759 5.39982 5.41893 5.54437 5.56130 5.62243 5.67520 5.72942 5.75742 5.87105 5.97849 6.04702 6.06784 6.20679 6.23375 6.25263 6.37560 6.65842 6.91543 7.08918 7.75223 7.87388 7.89835 8.08267 8.39526 8.78332 9.08850 9.63862 11.15835 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.004075 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.961011 B = 6868.915740 C = 7500.560987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.526 3.474 12 O -0.529 6.529 13 N -0.624 5.624 14 C 0.102 3.898 15 C -0.132 4.132 16 C -0.134 4.134 17 C 0.145 3.855 18 H 0.073 0.927 19 C -0.135 4.135 20 H 0.094 0.906 21 C -0.112 4.112 22 C -0.158 4.158 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.070 3.930 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -21.249 3.540 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.317 3.683 12 O -0.404 6.404 13 N -0.361 5.361 14 C -0.021 4.021 15 C -0.171 4.171 16 C -0.172 4.172 17 C 0.041 3.959 18 H 0.091 0.909 19 C -0.154 4.154 20 H 0.113 0.887 21 C -0.149 4.149 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.300 6.300 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.372 -21.059 3.553 22.593 hybrid contribution 0.837 1.084 -0.016 1.369 sum 8.209 -19.975 3.538 21.884 Atomic orbital electron populations 1.69999 1.06056 1.26568 1.50179 1.25018 0.94807 0.99190 0.95306 0.86601 0.79781 0.83563 0.78063 1.20676 1.19889 1.21206 1.21209 0.92882 0.91008 1.51404 0.92666 1.18901 0.93165 0.89366 0.98578 1.21853 1.00623 0.91734 1.02199 1.21288 0.88153 0.84402 0.74427 1.90670 1.14241 1.86935 1.48559 1.48756 1.07058 1.05196 1.75121 1.22206 0.81752 0.97344 1.00824 1.22729 0.98865 0.94778 1.00681 1.22835 0.95168 0.97580 1.01587 1.21362 0.94852 0.83075 0.96656 0.90884 1.22127 0.99671 0.98800 0.94838 0.88728 1.21605 0.97444 1.02433 0.93426 1.22203 1.01006 0.98139 0.98181 1.22562 0.93817 0.95452 0.89677 1.87942 1.36477 1.91623 1.13985 1.22576 0.97470 0.94846 0.85798 0.92952 0.95871 0.95861 0.90474 0.90455 0.90335 0.91718 0.90066 0.90648 0.90203 0.90331 0.91911 0.91218 0.91039 0.90849 0.93500 0.89141 0.88966 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.12 -2.59 4.74 -27.88 -0.13 -2.72 16 11 C 0.53 10.44 7.60 -10.99 -0.08 10.36 16 12 O -0.53 -12.72 15.24 5.56 0.08 -12.63 16 13 N -0.62 -9.17 2.30 -163.15 -0.37 -9.55 16 14 C 0.10 1.11 6.64 -2.64 -0.02 1.09 16 15 C -0.13 -1.07 7.07 -24.70 -0.17 -1.25 16 16 C -0.13 -1.13 5.14 -24.89 -0.13 -1.26 16 17 C 0.14 1.80 2.67 -66.96 -0.18 1.62 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.13 -1.75 2.12 -90.48 -0.19 -1.94 16 20 H 0.09 1.64 7.09 -51.93 -0.37 1.27 16 21 C -0.11 -1.31 4.88 -26.54 -0.13 -1.44 16 22 C -0.16 -1.74 6.14 -26.59 -0.16 -1.90 16 23 C 0.06 0.62 6.84 37.21 0.25 0.88 16 24 O -0.38 -4.87 10.77 -35.23 -0.38 -5.25 16 25 C 0.07 0.78 5.93 37.21 0.22 1.00 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.08 0.85 7.51 -51.93 -0.39 0.46 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.62 5.45 -51.93 -0.28 0.33 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.61 6.02 -51.93 -0.31 0.30 16 38 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.45 6.94 -51.93 -0.36 0.09 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -34.31 341.30 -8.61 -42.92 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.55 Total: -2.02 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.25 Total: -8.44 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.36 Total: -36.49 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.29 Total: -17.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.31 -8.61 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572844759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.298 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds