Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00197 * 2 1 4 4 H 1.48499 * 109.46792 * 269.99584 * 3 2 1 5 5 H 1.48500 * 109.47323 * 29.99367 * 3 2 1 6 6 H 1.48498 * 109.47273 * 149.99775 * 3 2 1 7 7 C 1.37882 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46811 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00142 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99696 * 180.02562 * 11 10 9 14 14 C 1.47421 * 125.64933 * 355.08598 * 13 11 10 15 15 C 1.54909 * 104.83018 * 155.60717 * 14 13 11 16 16 C 1.55152 * 101.58352 * 37.01098 * 15 14 13 17 17 C 1.47022 * 125.64553 * 174.77770 * 13 11 10 18 18 H 1.08999 * 109.88271 * 300.74094 * 17 13 11 19 19 C 1.53002 * 109.88619 * 61.90587 * 17 13 11 20 20 H 1.09001 * 109.52162 * 297.41018 * 19 17 13 21 21 C 1.53186 * 109.52097 * 57.52824 * 19 17 13 22 22 C 1.53170 * 109.03725 * 176.89152 * 21 19 17 23 23 C 1.53096 * 109.16314 * 303.01715 * 22 21 19 24 24 O 1.42901 * 109.41314 * 57.60841 * 23 22 21 25 25 C 1.42909 * 114.15857 * 298.87814 * 24 23 22 26 26 H 0.97003 * 119.99713 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47262 * 59.99614 * 9 7 2 28 28 H 1.09001 * 109.47036 * 300.00227 * 9 7 2 29 29 H 1.09003 * 109.47173 * 60.00286 * 10 9 7 30 30 H 1.08995 * 109.47038 * 299.99599 * 10 9 7 31 31 H 1.08998 * 110.36484 * 274.44209 * 14 13 11 32 32 H 1.09004 * 110.36707 * 36.76962 * 14 13 11 33 33 H 1.09005 * 111.00050 * 155.08270 * 15 14 13 34 34 H 1.08996 * 111.00569 * 278.89582 * 15 14 13 35 35 H 1.08997 * 110.72407 * 82.85958 * 16 15 14 36 36 H 1.09006 * 110.72101 * 205.95454 * 16 15 14 37 37 H 1.09006 * 109.54091 * 296.75872 * 21 19 17 38 38 H 1.08999 * 109.54334 * 56.93055 * 21 19 17 39 39 H 1.09000 * 109.52601 * 62.92483 * 22 21 19 40 40 H 1.09002 * 109.52561 * 183.05230 * 22 21 19 41 41 H 1.08999 * 109.48383 * 177.59579 * 23 22 21 42 42 H 1.09000 * 109.48017 * 297.62874 * 23 22 21 43 43 H 1.08999 * 109.42721 * 301.10964 * 25 24 23 44 44 H 1.09002 * 109.54209 * 181.07474 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 8 0.2789 -4.9671 0.0024 13 7 2.1656 -6.1344 0.0041 14 6 3.6289 -6.2818 -0.0971 15 6 3.9361 -7.6500 0.5611 16 6 2.7177 -8.4956 0.1052 17 6 1.5635 -7.4712 0.1137 18 1 1.0042 -7.5506 1.0458 19 6 0.6355 -7.7231 -1.0764 20 1 -0.1810 -7.0012 -1.0608 21 6 1.4245 -7.5752 -2.3811 22 6 0.5054 -7.9054 -3.5610 23 6 -0.0577 -9.3175 -3.3795 24 8 -0.7528 -9.3951 -2.1334 25 6 0.0662 -9.1416 -0.9900 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6040 0.8923 30 1 2.8725 -3.6047 -0.8877 31 1 3.9383 -6.2856 -1.1423 32 1 4.1295 -5.4792 0.4447 33 1 4.8670 -8.0678 0.1776 34 1 3.9676 -7.5628 1.6471 35 1 2.8759 -8.8900 -0.8984 36 1 2.5243 -9.3044 0.8099 37 1 1.7849 -6.5507 -2.4751 38 1 2.2721 -8.2605 -2.3743 39 1 -0.3145 -7.1881 -3.5960 40 1 1.0731 -7.8554 -4.4902 41 1 -0.7460 -9.5419 -4.1944 42 1 0.7599 -10.0383 -3.3852 43 1 0.8848 -9.8608 -0.9638 44 1 -0.5322 -9.2385 -0.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572844760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -100.993779 kcal Electronic energy + Delta-G solvation = -23158.694106 eV Core-core repulsion = 19882.073388 eV Total energy + Delta-G solvation = -3276.620718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56127 -38.83334 -37.16564 -33.83108 -33.39129 -32.12652 -31.41918 -30.65755 -27.81918 -25.84640 -25.09714 -23.97533 -22.60745 -21.88942 -21.03431 -19.42205 -18.35773 -16.96298 -16.63863 -16.13466 -15.92779 -15.62122 -14.93903 -14.87217 -14.55360 -14.42848 -14.07039 -13.74472 -13.39476 -13.00042 -12.68479 -12.58734 -12.30198 -12.10902 -11.95396 -11.87529 -11.45025 -11.32513 -11.08659 -10.97711 -10.92625 -10.80524 -10.58962 -10.58608 -10.16479 -9.94117 -9.64249 -9.55009 -9.13472 -8.94162 -8.37006 -8.29389 -5.95218 -3.99672 3.23938 3.27964 3.33557 3.39818 3.42446 3.79208 4.38256 4.45940 4.48635 4.64222 4.78317 4.82991 4.87400 4.94707 5.10694 5.21690 5.25071 5.28611 5.39681 5.40664 5.42258 5.54492 5.56542 5.62444 5.68051 5.73001 5.76645 5.87747 5.98431 6.05277 6.08228 6.21622 6.23002 6.25579 6.40124 6.66833 6.91705 7.09888 7.75187 7.87342 7.89879 8.08212 8.39555 8.78364 9.08827 9.63785 11.15739 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.004008 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.591160 B = 6984.730336 C = 7636.887794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.526 3.474 12 O -0.528 6.528 13 N -0.624 5.624 14 C 0.101 3.899 15 C -0.133 4.133 16 C -0.134 4.134 17 C 0.145 3.855 18 H 0.072 0.928 19 C -0.136 4.136 20 H 0.098 0.902 21 C -0.111 4.111 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.070 3.930 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -21.513 -3.117 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.317 3.683 12 O -0.403 6.403 13 N -0.361 5.361 14 C -0.022 4.022 15 C -0.171 4.171 16 C -0.172 4.172 17 C 0.041 3.959 18 H 0.091 0.909 19 C -0.155 4.155 20 H 0.116 0.884 21 C -0.148 4.148 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.834 -21.323 -3.098 22.605 hybrid contribution 0.846 1.076 -0.049 1.369 sum 7.679 -20.247 -3.147 21.882 Atomic orbital electron populations 1.69999 1.06059 1.26566 1.50170 1.25020 0.94808 0.99194 0.95305 0.86599 0.79781 0.83555 0.78061 1.20678 1.21208 1.19890 1.21210 0.92884 0.91011 1.51412 0.92666 1.18900 0.93164 0.89364 0.98579 1.21849 1.00637 0.91734 1.02197 1.21295 0.88164 0.84393 0.74448 1.90664 1.14223 1.86898 1.48542 1.48750 1.06995 1.05144 1.75238 1.22258 0.81570 0.97857 1.00498 1.22768 0.98114 0.95006 1.01189 1.22833 0.94539 0.97443 1.02391 1.21373 0.93904 0.82950 0.97666 0.90947 1.22160 0.99724 0.98656 0.94989 0.88354 1.21586 0.97419 1.02269 0.93523 1.22198 1.00412 0.98078 0.98821 1.22556 0.96617 0.95732 0.86562 1.87932 1.36851 1.91125 1.14151 1.22583 0.94698 0.94521 0.88921 0.92952 0.95874 0.95857 0.90397 0.90528 0.91719 0.90248 0.90118 0.90595 0.90220 0.90341 0.91299 0.92003 0.90847 0.91088 0.89155 0.93528 0.93240 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.12 -2.59 4.57 -27.88 -0.13 -2.71 16 11 C 0.53 10.40 7.67 -10.98 -0.08 10.32 16 12 O -0.53 -12.62 14.89 5.56 0.08 -12.53 16 13 N -0.62 -9.15 2.29 -163.02 -0.37 -9.53 16 14 C 0.10 1.10 6.74 -2.53 -0.02 1.09 16 15 C -0.13 -1.07 7.08 -24.59 -0.17 -1.25 16 16 C -0.13 -1.14 5.14 -24.90 -0.13 -1.26 16 17 C 0.15 1.80 2.72 -66.95 -0.18 1.62 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.14 -1.78 2.10 -90.48 -0.19 -1.97 16 20 H 0.10 1.72 6.79 -51.93 -0.35 1.37 16 21 C -0.11 -1.31 4.88 -26.55 -0.13 -1.44 16 22 C -0.16 -1.75 6.14 -26.59 -0.16 -1.92 16 23 C 0.06 0.63 6.85 37.21 0.25 0.89 16 24 O -0.38 -4.90 10.76 -35.23 -0.38 -5.28 16 25 C 0.07 0.78 5.93 37.20 0.22 1.00 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.62 5.45 -51.93 -0.28 0.34 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 38 H 0.06 0.61 6.02 -51.93 -0.31 0.30 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.45 6.94 -51.93 -0.36 0.09 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -34.20 340.85 -8.61 -42.81 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.54 Total: -1.92 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.25 Total: -8.52 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.36 Total: -36.45 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.30 Total: -17.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.20 -8.61 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572844760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.183 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds