Wall clock time and date at job start Tue Mar 31 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99716 * 2 1 4 4 H 1.48504 * 109.47000 * 270.00038 * 3 2 1 5 5 H 1.48497 * 109.47346 * 29.99755 * 3 2 1 6 6 H 1.48495 * 109.47535 * 150.00380 * 3 2 1 7 7 C 1.37875 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47035 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00105 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99715 * 179.97438 * 11 10 9 14 14 C 1.47424 * 125.65115 * 0.02562 * 13 11 10 15 15 C 1.54907 * 104.83488 * 204.09058 * 14 13 11 16 16 C 1.55154 * 101.58192 * 322.99319 * 15 14 13 17 17 C 1.47026 * 125.64751 * 179.72245 * 13 11 10 18 18 H 1.08999 * 109.88379 * 59.55504 * 17 13 11 19 19 C 1.53000 * 109.87850 * 298.39363 * 17 13 11 20 20 H 1.09003 * 109.52442 * 62.32280 * 19 17 13 21 21 C 1.53175 * 109.52275 * 182.44720 * 19 17 13 22 22 C 1.53180 * 109.04048 * 176.88864 * 21 19 17 23 23 C 1.53100 * 109.16025 * 303.01814 * 22 21 19 24 24 O 1.42908 * 109.41161 * 57.60747 * 23 22 21 25 25 C 1.42907 * 114.15601 * 298.87355 * 24 23 22 26 26 H 0.96998 * 119.99895 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46746 * 59.99662 * 9 7 2 28 28 H 1.08995 * 109.46850 * 299.99548 * 9 7 2 29 29 H 1.09003 * 109.46911 * 59.99688 * 10 9 7 30 30 H 1.09001 * 109.47077 * 300.00674 * 10 9 7 31 31 H 1.09000 * 110.36821 * 322.93608 * 14 13 11 32 32 H 1.09002 * 110.36421 * 85.25416 * 14 13 11 33 33 H 1.08998 * 111.00368 * 81.06732 * 15 14 13 34 34 H 1.09000 * 111.00559 * 204.88071 * 15 14 13 35 35 H 1.08997 * 110.72234 * 153.86341 * 16 15 14 36 36 H 1.08999 * 110.72245 * 277.13562 * 16 15 14 37 37 H 1.09006 * 109.54550 * 296.75230 * 21 19 17 38 38 H 1.09002 * 109.54360 * 57.01704 * 21 19 17 39 39 H 1.08993 * 109.52222 * 62.91918 * 22 21 19 40 40 H 1.09000 * 109.52397 * 183.11564 * 22 21 19 41 41 H 1.08994 * 109.48146 * 177.59143 * 23 22 21 42 42 H 1.08998 * 109.48042 * 297.61474 * 23 22 21 43 43 H 1.09003 * 109.42825 * 301.11273 * 25 24 23 44 44 H 1.08997 * 109.53989 * 181.07991 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2793 -4.9671 0.0011 13 7 2.1660 -6.1343 0.0008 14 6 3.6331 -6.2793 0.0002 15 6 3.8931 -7.6786 -0.6113 16 6 2.7133 -8.4986 -0.0256 17 6 1.5599 -7.4737 0.0071 18 1 0.9295 -7.5996 -0.8732 19 6 0.7283 -7.6625 1.2774 20 1 -0.0856 -6.9375 1.2911 21 6 0.1507 -9.0809 1.3051 22 6 -0.6143 -9.2834 2.6167 23 6 0.3273 -9.0164 3.7940 24 8 0.8530 -7.6916 3.6907 25 6 1.6175 -7.4565 2.5064 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6243 -2.5567 0.8903 29 1 2.8721 -3.6042 0.8905 30 1 2.8722 -3.6042 -0.8894 31 1 4.0906 -5.5051 -0.6157 32 1 4.0192 -6.2327 1.0185 33 1 3.8430 -7.6448 -1.6996 34 1 4.8508 -8.0786 -0.2785 35 1 2.4675 -9.3387 -0.6752 36 1 2.9461 -8.8439 0.9817 37 1 -0.5281 -9.2148 0.4628 38 1 0.9618 -9.8062 1.2403 39 1 -1.4551 -8.5912 2.6585 40 1 -0.9819 -10.3082 2.6695 41 1 -0.2228 -9.1173 4.7295 42 1 1.1464 -9.7352 3.7746 43 1 2.4543 -8.1541 2.4706 44 1 1.9963 -6.4344 2.5139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572844761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:06 Heat of formation + Delta-G solvation = -100.933804 kcal Electronic energy + Delta-G solvation = -23173.795072 eV Core-core repulsion = 19897.176955 eV Total energy + Delta-G solvation = -3276.618117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56972 -38.79989 -37.14832 -34.01122 -33.40755 -31.89132 -31.47263 -30.60900 -27.85883 -25.82656 -25.11487 -24.03780 -22.64890 -21.89297 -20.90236 -19.41878 -18.39135 -17.00979 -16.78278 -16.17191 -15.73851 -15.58231 -14.90917 -14.77416 -14.63385 -14.41168 -14.12565 -13.68603 -13.35277 -12.94330 -12.75887 -12.56945 -12.37254 -12.18924 -12.01526 -11.81938 -11.48168 -11.23308 -11.06649 -11.06018 -10.91563 -10.77126 -10.65189 -10.57041 -10.28928 -9.92197 -9.61267 -9.43550 -9.12854 -8.95268 -8.37424 -8.28160 -5.93301 -3.97683 3.24321 3.28567 3.35142 3.41359 3.44162 3.83716 4.38825 4.45814 4.50224 4.63766 4.74497 4.77824 4.80475 4.92102 5.08382 5.16362 5.23125 5.34723 5.39580 5.41619 5.47656 5.52920 5.57389 5.63545 5.67604 5.71510 5.78195 5.82865 5.93674 5.98647 6.03368 6.13715 6.23679 6.26730 6.37572 6.65501 6.93218 7.17295 7.77189 7.89247 7.89601 8.10218 8.41370 8.78797 9.10758 9.65710 11.17689 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.004066 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.200395 B = 6884.251050 C = 7517.216634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.526 3.474 12 O -0.528 6.528 13 N -0.628 5.628 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.133 4.133 17 C 0.145 3.855 18 H 0.074 0.926 19 C -0.135 4.135 20 H 0.097 0.903 21 C -0.114 4.114 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.381 6.381 25 C 0.072 3.928 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -22.680 2.414 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.317 3.683 12 O -0.403 6.403 13 N -0.365 5.365 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.171 4.171 17 C 0.041 3.959 18 H 0.092 0.908 19 C -0.155 4.155 20 H 0.115 0.885 21 C -0.152 4.152 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.299 6.299 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.085 -22.301 2.551 23.257 hybrid contribution 0.498 0.691 -0.287 0.899 sum 6.584 -21.610 2.263 22.704 Atomic orbital electron populations 1.70001 1.06055 1.26547 1.50217 1.25019 0.94809 0.99191 0.95318 0.86598 0.79793 0.83564 0.78031 1.20702 1.21217 1.19881 1.21213 0.92892 0.91007 1.51356 0.92648 1.18906 0.93177 0.89357 0.98602 1.21854 1.00649 0.91675 1.02251 1.21310 0.88176 0.84395 0.74408 1.90665 1.14229 1.86892 1.48521 1.48838 1.06694 1.05133 1.75822 1.22279 0.81536 0.97676 1.00861 1.22775 0.98472 0.94845 1.01010 1.22817 0.94754 0.97566 1.01956 1.21410 0.94365 0.82817 0.97284 0.90838 1.22123 1.00046 0.98259 0.95045 0.88500 1.21600 0.99745 0.96057 0.97751 1.22185 0.99570 1.02146 0.95480 1.22553 0.96050 0.84620 0.98484 1.87980 1.70326 1.30316 1.41292 1.22629 0.92290 1.01767 0.83780 0.92969 0.95890 0.95786 0.90391 0.90411 0.90150 0.91636 0.90586 0.90034 0.90302 0.90330 0.91384 0.91787 0.90851 0.91049 0.89162 0.93564 0.93334 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.12 -2.61 4.64 -27.89 -0.13 -2.74 16 11 C 0.53 10.48 7.64 -10.99 -0.08 10.39 16 12 O -0.53 -12.71 15.05 5.56 0.08 -12.63 16 13 N -0.63 -9.27 2.29 -163.01 -0.37 -9.64 16 14 C 0.10 1.08 6.69 -2.53 -0.02 1.07 16 15 C -0.13 -1.08 7.09 -24.59 -0.17 -1.25 16 16 C -0.13 -1.13 5.16 -24.89 -0.13 -1.26 16 17 C 0.15 1.82 2.68 -66.95 -0.18 1.64 16 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.14 -1.78 2.11 -90.48 -0.19 -1.97 16 20 H 0.10 1.70 6.92 -51.93 -0.36 1.34 16 21 C -0.11 -1.15 5.12 -26.55 -0.14 -1.29 16 22 C -0.16 -1.53 6.14 -26.59 -0.16 -1.69 16 23 C 0.06 0.62 6.85 37.21 0.25 0.87 16 24 O -0.38 -5.42 10.76 -35.23 -0.38 -5.80 16 25 C 0.07 0.94 5.71 37.21 0.21 1.15 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.49 7.85 -51.93 -0.41 1.09 16 31 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.62 5.45 -51.93 -0.28 0.34 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.53 6.95 -51.93 -0.36 0.17 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.52 6.02 -51.93 -0.31 0.21 16 44 H 0.09 1.39 7.65 -51.93 -0.40 1.00 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -34.54 341.03 -8.62 -43.16 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.54 Total: -2.03 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.27 Total: -8.01 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.36 Total: -36.70 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.30 Total: -18.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.54 -8.62 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572844761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.776 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds