Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42889 * 114.00164 * 2 1 4 4 C 1.53002 * 109.47397 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46738 * 63.77339 * 4 3 2 6 6 C 1.37094 * 120.00215 * 264.24725 * 5 4 3 7 7 H 1.08003 * 120.00094 * 143.23556 * 6 5 4 8 8 C 1.38948 * 120.00061 * 323.22807 * 6 5 4 9 9 N 1.31410 * 119.99938 * 160.75796 * 8 6 5 10 10 Si 1.86803 * 120.00033 * 340.76363 * 8 6 5 11 11 H 1.48496 * 109.47208 * 93.41355 * 10 8 6 12 12 H 1.48504 * 109.46935 * 213.41026 * 10 8 6 13 13 H 1.48503 * 109.47050 * 333.40853 * 10 8 6 14 14 C 1.34776 * 119.99877 * 84.24929 * 5 4 3 15 15 O 1.21291 * 119.99968 * 355.29757 * 14 5 4 16 16 C 1.50695 * 120.00384 * 175.29389 * 14 5 4 17 17 H 1.09001 * 109.81328 * 332.60327 * 16 14 5 18 18 C 1.53378 * 109.64611 * 212.07313 * 16 14 5 19 19 C 1.53022 * 108.45437 * 172.89704 * 18 16 14 20 20 C 1.50065 * 110.14653 * 49.41896 * 19 18 16 21 21 C 1.50702 * 117.95936 * 162.84848 * 20 19 18 22 22 C 1.29438 * 124.07682 * 342.87229 * 20 19 18 23 23 C 1.50702 * 117.95963 * 180.46813 * 22 20 19 24 24 C 1.50063 * 124.08054 * 0.49117 * 22 20 19 25 25 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46832 * 299.99984 * 1 2 3 27 27 H 1.08997 * 109.47118 * 59.99455 * 1 2 3 28 28 H 1.09003 * 109.47443 * 60.00356 * 3 2 1 29 29 H 1.09002 * 109.47302 * 300.00400 * 3 2 1 30 30 H 1.09002 * 109.46959 * 303.77527 * 4 3 2 31 31 H 1.09001 * 109.47233 * 183.77667 * 4 3 2 32 32 H 0.97011 * 119.99981 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.64696 * 53.19415 * 18 16 14 34 34 H 1.09006 * 109.62516 * 292.57845 * 18 16 14 35 35 H 1.09005 * 109.34991 * 289.21567 * 19 18 16 36 36 H 1.08995 * 109.35827 * 169.63150 * 19 18 16 37 37 H 1.08995 * 109.47017 * 183.77579 * 21 20 19 38 38 H 1.09000 * 109.47434 * 303.78268 * 21 20 19 39 39 H 1.09007 * 109.47091 * 63.78146 * 21 20 19 40 40 H 1.09008 * 109.47200 * 176.81505 * 23 22 20 41 41 H 1.08998 * 109.47548 * 296.81329 * 23 22 20 42 42 H 1.09001 * 109.47490 * 56.81792 * 23 22 20 43 43 H 1.08998 * 109.35771 * 103.04829 * 24 22 20 44 44 H 1.08999 * 109.36437 * 222.63918 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9735 0.5377 -1.2400 6 6 4.2083 -0.8128 -1.2625 7 1 3.9514 -1.3910 -2.1378 8 6 4.7770 -1.4376 -0.1594 9 7 4.6626 -2.7381 -0.0094 10 14 5.7040 -0.4289 1.1105 11 1 4.7800 -0.0440 2.2075 12 1 6.8208 -1.2359 1.6644 13 1 6.2481 0.7951 0.4693 14 6 4.1457 1.2704 -2.3580 15 8 3.8569 2.4484 -2.3616 16 6 4.6973 0.6261 -3.6037 17 1 5.3286 -0.2203 -3.3333 18 6 5.5200 1.6515 -4.3936 19 6 6.2111 0.9291 -5.5521 20 6 5.2191 0.0905 -6.3036 21 6 5.5942 -0.3793 -7.6855 22 6 4.0611 -0.2539 -5.8390 23 6 3.1766 -1.1093 -6.7090 24 6 3.5443 0.1459 -4.4880 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8529 0.5862 0.8534 31 1 3.9787 2.1781 0.0670 32 1 5.0593 -3.1742 0.7610 33 1 6.2699 2.1000 -3.7420 34 1 4.8608 2.4260 -4.7859 35 1 7.0009 0.2890 -5.1589 36 1 6.6476 1.6647 -6.2277 37 1 4.7545 -0.9156 -8.1273 38 1 5.8434 0.4810 -8.3067 39 1 6.4564 -1.0434 -7.6219 40 1 2.2668 -1.3626 -6.1646 41 1 2.9173 -0.5605 -7.6144 42 1 3.7058 -2.0237 -6.9774 43 1 2.8178 0.9503 -4.6027 44 1 3.0610 -0.7106 -4.0180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573252839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = -69.032541 kcal Electronic energy + Delta-G solvation = -23614.368366 eV Core-core repulsion = 20339.133591 eV Total energy + Delta-G solvation = -3275.234774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -39.58427 -38.07853 -36.92546 -34.79650 -33.07286 -31.90633 -31.40839 -29.44077 -27.06767 -26.14165 -25.74609 -24.64694 -22.88572 -22.51119 -20.86779 -18.72742 -16.95967 -16.75618 -16.24398 -15.69873 -15.31105 -14.82087 -14.63844 -14.53303 -14.35244 -14.24147 -13.53643 -13.40986 -13.16607 -12.79714 -12.48602 -12.35380 -12.24726 -11.83275 -11.72873 -11.65561 -11.49835 -11.45195 -11.37921 -11.14292 -10.86790 -10.76043 -10.32425 -10.16633 -9.96601 -9.83688 -9.78268 -9.09591 -9.05837 -8.39803 -8.13865 -7.74938 -6.36883 -3.94057 2.53572 3.08087 3.24439 3.29769 3.74315 4.18072 4.33108 4.49703 4.98908 5.10015 5.12696 5.44787 5.51419 5.60242 5.61714 5.68235 5.72970 5.76036 5.77912 5.79046 5.86095 5.91294 5.94437 5.99590 6.04318 6.05731 6.14435 6.15116 6.20163 6.23989 6.32256 6.44612 6.48037 6.49728 6.59669 6.70315 6.97460 7.05372 7.39365 7.43802 7.81670 8.16566 8.34619 9.05305 9.43733 9.75251 10.74193 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.006202 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.371634 B = 4513.675180 C = 4942.104004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.454 5.454 6 C -0.324 4.324 7 H 0.105 0.895 8 C 0.069 3.931 9 N -0.859 5.859 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.482 3.518 15 O -0.605 6.605 16 C -0.089 4.089 17 H 0.101 0.899 18 C -0.097 4.097 19 C -0.077 4.077 20 C -0.140 4.140 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.064 4.064 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.273 0.727 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 3.844 -7.612 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.024 4.024 5 N -0.173 5.173 6 C -0.451 4.451 7 H 0.122 0.878 8 C -0.137 4.137 9 N -0.495 5.495 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.272 3.728 15 O -0.491 6.491 16 C -0.110 4.110 17 H 0.119 0.881 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.140 4.140 21 C -0.181 4.181 22 C -0.115 4.115 23 C -0.174 4.174 24 C -0.102 4.102 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.705 4.044 -7.487 8.678 hybrid contribution 0.192 0.440 0.947 1.062 sum -1.513 4.484 -6.540 8.072 Atomic orbital electron populations 1.22657 0.83044 1.02048 0.98750 1.88197 1.17667 1.26759 1.95029 1.22853 0.95023 0.85113 0.99331 1.21763 0.92323 0.98423 0.89925 1.43716 1.57793 1.08309 1.07472 1.18983 1.40917 0.80400 1.04828 0.87784 1.25271 0.95944 0.95233 0.97288 1.69741 1.41233 1.09254 1.29278 0.87028 0.79877 0.80979 0.81856 1.20227 1.21659 1.18782 1.20372 0.80870 0.85803 0.85754 1.90508 1.56421 1.16763 1.85397 1.21066 0.97768 0.99449 0.92685 0.88065 1.21400 0.98797 0.97382 0.95928 1.20330 0.96940 0.97668 0.96448 1.20595 0.95859 1.01081 0.96497 1.21046 1.01844 1.00751 0.94468 1.20711 0.95444 0.99027 0.96327 1.20933 0.99084 0.98703 0.98656 1.20232 0.97275 1.01134 0.91536 0.90101 0.95192 0.94918 0.94112 0.93053 0.90574 0.90298 0.91719 0.91939 0.91551 0.91168 0.91707 0.91528 0.92432 0.92168 0.92257 0.92119 0.91795 0.91323 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.80 10.40 -35.23 -0.37 -8.16 16 3 C 0.05 1.12 6.24 37.16 0.23 1.35 16 4 C 0.10 2.25 4.28 -4.04 -0.02 2.23 16 5 N -0.45 -11.04 2.16 -114.81 -0.25 -11.29 16 6 C -0.32 -8.47 8.34 -14.94 -0.12 -8.60 16 7 H 0.10 2.86 6.67 -52.48 -0.35 2.51 16 8 C 0.07 1.86 5.33 -17.47 -0.09 1.76 16 9 N -0.86 -24.03 13.96 55.50 0.77 -23.26 16 10 Si 0.87 20.73 24.86 -169.99 -4.23 16.50 16 11 H -0.27 -6.33 6.62 56.52 0.37 -5.95 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -6.25 7.11 56.52 0.40 -5.84 16 14 C 0.48 11.25 6.60 -10.99 -0.07 11.18 16 15 O -0.60 -15.01 15.97 5.55 0.09 -14.92 16 16 C -0.09 -1.78 1.79 -91.56 -0.16 -1.95 16 17 H 0.10 2.17 6.88 -51.93 -0.36 1.81 16 18 C -0.10 -1.71 4.81 -26.52 -0.13 -1.84 16 19 C -0.08 -1.13 5.81 -28.18 -0.16 -1.30 16 20 C -0.14 -2.06 5.84 -100.94 -0.59 -2.65 16 21 C -0.12 -1.46 9.64 36.01 0.35 -1.11 16 22 C -0.12 -1.80 5.84 -100.94 -0.59 -2.39 16 23 C -0.12 -1.52 8.34 36.01 0.30 -1.22 16 24 C -0.06 -1.18 4.96 -28.17 -0.14 -1.32 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.08 1.79 3.17 -51.93 -0.16 1.63 16 31 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.72 5.20 -51.93 -0.27 0.45 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.77 7.93 -51.92 -0.41 0.36 16 41 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 42 H 0.06 0.77 7.43 -51.93 -0.39 0.39 16 43 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 44 H 0.08 1.54 7.38 -51.93 -0.38 1.16 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -29.84 342.74 -6.24 -36.08 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.34 Total: 4.09 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.09 Total: -4.21 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.53 Total: -34.55 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.28 Total: -23.08 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.23 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.84 -6.24 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573252839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.955 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds