Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47112 * 240.00369 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.47552 * 125.66915 * 359.69053 * 15 13 12 17 17 C 1.55409 * 104.86316 * 156.01068 * 16 15 13 18 18 C 1.53783 * 101.33062 * 35.95086 * 17 16 15 19 19 C 1.53160 * 111.48059 * 86.98017 * 18 17 16 20 20 C 1.54818 * 103.55303 * 121.56889 * 19 18 17 21 21 O 1.44551 * 104.86471 * 336.25470 * 20 19 18 22 22 C 1.44762 * 105.51692 * 39.62030 * 21 20 19 23 23 C 1.47366 * 125.67386 * 180.02562 * 15 13 12 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.09001 * 110.33796 * 274.99099 * 16 15 13 34 34 H 1.09001 * 110.33892 * 37.23608 * 16 15 13 35 35 H 1.08997 * 111.24812 * 277.87153 * 17 16 15 36 36 H 1.08999 * 110.91288 * 153.88298 * 17 16 15 37 37 H 1.09007 * 110.60055 * 240.08417 * 19 18 17 38 38 H 1.08995 * 110.60634 * 3.04541 * 19 18 17 39 39 H 1.08997 * 110.35972 * 217.40710 * 20 19 18 40 40 H 1.08995 * 110.36079 * 95.09845 * 20 19 18 41 41 H 1.09002 * 110.43134 * 202.06645 * 22 21 20 42 42 H 1.09001 * 110.53397 * 79.62495 * 22 21 20 43 43 H 1.09001 * 109.97692 * 301.37974 * 23 15 13 44 44 H 1.08999 * 109.98257 * 62.62942 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 3.8633 -8.7681 -0.0083 17 6 4.1273 -10.1715 0.6050 18 6 2.9376 -10.9724 0.0499 19 6 3.2504 -11.5573 -1.3306 20 6 3.0631 -13.0809 -1.1300 21 8 3.2542 -13.2947 0.2868 22 6 2.6075 -12.1752 0.9381 23 6 1.7879 -9.9651 -0.0024 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 4.2443 -8.7198 -1.0284 34 1 4.3236 -7.9941 0.6059 35 1 4.1021 -10.1377 1.6941 36 1 5.0735 -10.5796 0.2497 37 1 2.5496 -11.1793 -2.0751 38 1 4.2770 -11.3316 -1.6191 39 1 3.8095 -13.6332 -1.7009 40 1 2.0584 -13.3818 -1.4267 41 1 3.0132 -12.0314 1.9395 42 1 1.5295 -12.3301 0.9837 43 1 1.1481 -10.0849 0.8720 44 1 1.2057 -10.1103 -0.9123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -102.970495 kcal Electronic energy + Delta-G solvation = -21791.498647 eV Core-core repulsion = 18514.792213 eV Total energy + Delta-G solvation = -3276.706434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 8.81 seconds Orbital eigenvalues (eV) -41.07631 -39.31538 -37.06842 -34.88484 -32.97493 -32.49907 -30.44510 -29.99856 -29.48522 -26.61930 -24.99065 -23.50884 -23.19488 -22.08398 -20.02308 -19.95366 -19.22436 -17.06685 -16.61842 -16.33377 -16.22159 -16.06047 -15.48473 -15.34030 -14.87836 -14.42676 -14.29194 -13.52865 -13.30381 -13.00117 -12.93095 -12.79826 -12.55739 -12.41497 -12.09343 -11.82645 -11.68246 -11.61414 -11.39313 -11.12888 -11.02276 -10.95531 -10.53071 -10.51532 -10.39552 -10.17725 -9.82195 -9.60065 -9.21530 -8.98264 -8.82431 -8.29337 -5.94164 -3.96806 2.68698 2.81234 3.35795 3.40152 3.42344 3.43867 3.84772 3.93724 4.16400 4.49370 4.49988 4.56810 4.68237 4.74167 4.82922 5.01521 5.12171 5.17209 5.23928 5.27181 5.31460 5.32058 5.35471 5.40718 5.41046 5.43311 5.53171 5.60134 5.67174 5.83775 6.06970 6.14501 6.29989 6.32116 6.55457 6.84723 7.02198 7.20762 7.38213 7.74817 7.91199 8.07160 8.19162 8.48794 9.10672 9.66658 11.17140 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.053488 B = 0.002390 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.359228 B =11710.640659 C =11954.830376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.534 6.534 15 N -0.627 5.627 16 C 0.099 3.901 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.142 4.142 20 C 0.044 3.956 21 O -0.375 6.375 22 C 0.061 3.939 23 C 0.123 3.877 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 -27.225 -0.854 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.409 6.409 15 N -0.364 5.364 16 C -0.024 4.024 17 C -0.155 4.155 18 C -0.109 4.109 19 C -0.180 4.180 20 C -0.033 4.033 21 O -0.294 6.294 22 C -0.016 4.016 23 C 0.000 4.000 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.055 -27.185 -0.753 28.663 hybrid contribution 0.380 1.108 -0.159 1.182 sum 9.434 -26.077 -0.912 27.746 Atomic orbital electron populations 1.69967 1.06044 1.26618 1.50853 1.25046 0.94850 0.99226 0.95472 0.86666 0.79566 0.83249 0.78537 1.20290 1.21325 1.20290 1.21246 0.92930 0.91208 1.50511 0.92817 1.19093 0.94059 0.91249 0.97318 1.21645 0.99069 0.93959 1.00045 1.21469 0.97032 0.92704 1.02976 1.21781 1.00028 0.91624 1.03833 1.20853 0.87919 0.84379 0.75060 1.90715 1.14065 1.87025 1.49110 1.48726 1.07179 1.05381 1.75115 1.22463 0.80905 0.97804 1.01210 1.22808 0.97616 0.93910 1.01139 1.22057 0.96448 0.95951 0.96455 1.22948 1.03422 0.95613 0.95977 1.23523 1.01534 0.95320 0.82900 1.89194 1.77123 1.45021 1.18017 1.23293 0.97888 0.83693 0.96707 1.21755 0.94499 0.81260 1.02509 0.92988 0.96594 0.96584 0.93490 0.93485 0.91800 0.91790 0.89235 0.89204 0.91131 0.89970 0.90012 0.89302 0.89919 0.89943 0.88968 0.92085 0.88520 0.91634 0.91111 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.02 16 12 C -0.13 -1.83 4.71 -27.88 -0.13 -1.96 16 13 C 0.53 7.74 7.85 -10.98 -0.09 7.66 16 14 O -0.53 -10.10 16.31 5.56 0.09 -10.00 16 15 N -0.63 -6.85 3.34 -170.68 -0.57 -7.42 16 16 C 0.10 0.73 6.64 -2.19 -0.01 0.72 16 17 C -0.12 -0.69 5.97 -25.05 -0.15 -0.84 16 18 C -0.11 -0.73 0.80 -153.99 -0.12 -0.85 16 19 C -0.14 -0.82 6.32 -25.69 -0.16 -0.99 16 20 C 0.04 0.27 7.67 38.12 0.29 0.56 16 21 O -0.37 -3.15 11.66 -35.23 -0.41 -3.56 16 22 C 0.06 0.42 6.70 37.22 0.25 0.67 16 23 C 0.12 1.15 6.02 -3.60 -0.02 1.12 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.55 7.49 -51.93 -0.39 0.16 16 35 H 0.08 0.47 7.77 -51.93 -0.40 0.07 16 36 H 0.09 0.43 7.70 -51.93 -0.40 0.03 16 37 H 0.08 0.49 7.35 -51.93 -0.38 0.11 16 38 H 0.08 0.42 7.50 -51.93 -0.39 0.03 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.58 7.62 -51.93 -0.40 0.18 16 42 H 0.07 0.42 7.85 -51.93 -0.41 0.01 16 43 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 44 H 0.07 0.69 7.39 -51.93 -0.38 0.31 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -34.57 351.02 -8.57 -43.14 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -7.73 Total: -5.62 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.95 Total: -11.84 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.17 Total: -34.37 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.32 Total: -13.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.57 -8.57 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.833 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.81 seconds