Wall clock time and date at job start Tue Mar 31 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46747 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47169 * 59.99274 * 3 2 1 7 7 C 1.37882 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47430 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47236 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47172 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99884 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00052 * 180.02562 * 13 12 11 16 16 C 1.47152 * 125.60261 * 359.96993 * 15 13 12 17 17 C 1.54599 * 107.33383 * 179.05674 * 16 15 13 18 18 C 1.53593 * 102.77028 * 339.23434 * 17 16 15 19 19 C 1.52998 * 111.88969 * 272.91400 * 18 17 16 20 20 C 1.54860 * 103.48383 * 237.56731 * 19 18 17 21 21 O 1.44856 * 104.91574 * 23.70634 * 20 19 18 22 22 C 1.44799 * 105.39828 * 320.51626 * 21 20 19 23 23 C 1.47726 * 125.60499 * 179.97438 * 15 13 12 24 24 H 0.97003 * 120.00172 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47349 * 59.99633 * 9 7 2 26 26 H 1.08996 * 109.47312 * 299.99588 * 9 7 2 27 27 H 1.09003 * 109.47031 * 59.99486 * 10 9 7 28 28 H 1.08996 * 109.47079 * 300.00223 * 10 9 7 29 29 H 1.09003 * 109.47121 * 59.99924 * 11 10 9 30 30 H 1.08996 * 109.47484 * 300.00358 * 11 10 9 31 31 H 1.08996 * 109.46887 * 60.00352 * 12 11 10 32 32 H 1.08996 * 109.47280 * 300.00610 * 12 11 10 33 33 H 1.08998 * 109.86915 * 59.62289 * 16 15 13 34 34 H 1.08997 * 109.87155 * 298.49579 * 16 15 13 35 35 H 1.09004 * 110.75280 * 220.91442 * 17 16 15 36 36 H 1.08998 * 110.90821 * 97.63091 * 17 16 15 37 37 H 1.08990 * 110.61631 * 356.06887 * 19 18 17 38 38 H 1.09004 * 110.61308 * 118.91070 * 19 18 17 39 39 H 1.08999 * 110.35809 * 142.55323 * 20 19 18 40 40 H 1.09006 * 110.35974 * 264.74369 * 20 19 18 41 41 H 1.09002 * 110.44213 * 280.20744 * 22 21 20 42 42 H 1.09001 * 110.43969 * 157.81148 * 22 21 20 43 43 H 1.08999 * 110.39178 * 83.68074 * 23 15 13 44 44 H 1.09003 * 110.39114 * 321.29058 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7211 -7.4552 0.0005 14 8 0.5082 -7.4552 0.0005 15 7 2.3949 -8.6223 0.0005 16 6 3.8594 -8.7660 -0.0001 17 6 4.1738 -10.2795 0.0245 18 6 2.8725 -10.8877 0.5684 19 6 2.8553 -10.9234 2.0979 20 6 2.6485 -12.4236 2.4218 21 8 3.1301 -13.1276 1.2510 22 6 2.6897 -12.3386 0.1196 23 6 1.7848 -9.9677 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0447 0.8913 31 1 3.1018 -6.0922 0.8901 32 1 3.1006 -6.0923 -0.8898 33 1 4.2791 -8.2860 0.8840 34 1 4.2755 -8.3157 -0.9013 35 1 5.0079 -10.4899 0.6939 36 1 4.3832 -10.6496 -0.9792 37 1 3.8048 -10.5711 2.5007 38 1 2.0298 -10.3269 2.4864 39 1 3.2301 -12.7057 3.2994 40 1 1.5914 -12.6342 2.5845 41 1 1.6411 -12.5399 -0.0998 42 1 3.3074 -12.5476 -0.7538 43 1 1.5251 -10.2674 -1.0142 44 1 0.9021 -9.9842 0.6404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:53 Heat of formation + Delta-G solvation = -103.851696 kcal Electronic energy + Delta-G solvation = -21851.888686 eV Core-core repulsion = 18575.144040 eV Total energy + Delta-G solvation = -3276.744646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06986 -39.28830 -37.06710 -34.88607 -32.95293 -32.48843 -30.50941 -29.97906 -29.48703 -26.63095 -25.00718 -23.53419 -23.10717 -22.05875 -20.02509 -19.97213 -19.20013 -17.07210 -16.72211 -16.34477 -16.16020 -15.99288 -15.41606 -15.27301 -14.94884 -14.40192 -14.30283 -13.60579 -13.32427 -13.09959 -12.96564 -12.67845 -12.56753 -12.34655 -12.09300 -11.78094 -11.68049 -11.61176 -11.37387 -11.13096 -11.04150 -10.98551 -10.52887 -10.47974 -10.40346 -10.16960 -9.82694 -9.60675 -9.21764 -8.96565 -8.81785 -8.30342 -5.94866 -3.97276 2.68423 2.81003 3.33290 3.40430 3.44315 3.44507 3.85436 3.99108 4.15782 4.49148 4.54013 4.59999 4.70691 4.73413 4.78648 5.03845 5.12360 5.15673 5.27542 5.29021 5.32050 5.32664 5.35541 5.40325 5.40899 5.44969 5.55275 5.63889 5.68002 5.83750 6.06706 6.14404 6.29664 6.32036 6.55294 6.84539 7.02029 7.20559 7.38215 7.75043 7.90840 8.06703 8.18750 8.48560 9.10687 9.66355 11.16533 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047468 B = 0.002441 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.730074 B =11465.612898 C =11638.768512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.534 6.534 15 N -0.626 5.626 16 C 0.101 3.899 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.140 4.140 20 C 0.044 3.956 21 O -0.375 6.375 22 C 0.062 3.938 23 C 0.121 3.879 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -26.837 1.745 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.410 6.410 15 N -0.363 5.363 16 C -0.022 4.022 17 C -0.153 4.153 18 C -0.110 4.110 19 C -0.177 4.177 20 C -0.033 4.033 21 O -0.294 6.294 22 C -0.015 4.015 23 C -0.002 4.002 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.670 -26.817 1.740 28.238 hybrid contribution 0.375 1.170 -0.005 1.229 sum 9.045 -25.647 1.735 27.250 Atomic orbital electron populations 1.69983 1.06054 1.26394 1.51044 1.25049 0.94841 0.99251 0.95490 0.86557 0.80075 0.83928 0.77546 1.19783 1.21048 1.21054 1.21320 0.93007 0.91182 1.50238 0.92710 1.19102 0.94068 0.91283 0.97323 1.21643 0.99064 0.93962 1.00049 1.21467 0.97031 0.92717 1.02961 1.21777 1.00006 0.91644 1.03842 1.20839 0.87911 0.84401 0.75007 1.90716 1.14033 1.87008 1.49204 1.48693 1.07031 1.05484 1.75093 1.22109 0.80959 0.96862 1.02309 1.22581 0.96682 0.93727 1.02312 1.22085 0.96586 0.96038 0.96303 1.22829 1.03802 0.97318 0.93768 1.23581 0.99617 0.90539 0.89540 1.89257 1.77184 1.47875 1.15088 1.23197 1.00395 0.87473 0.90461 1.21977 0.95676 0.81473 1.01062 0.93099 0.96586 0.96585 0.93502 0.93482 0.91799 0.91812 0.89252 0.89225 0.91068 0.90938 0.89453 0.90054 0.90056 0.89923 0.88978 0.92021 0.91637 0.88556 0.91267 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.89 4.50 -26.74 -0.12 -2.01 16 12 C -0.13 -1.83 4.89 -27.88 -0.14 -1.97 16 13 C 0.53 7.70 7.85 -10.99 -0.09 7.61 16 14 O -0.53 -10.02 16.26 5.55 0.09 -9.93 16 15 N -0.63 -6.77 3.34 -170.97 -0.57 -7.35 16 16 C 0.10 0.75 6.46 -2.85 -0.02 0.73 16 17 C -0.12 -0.67 5.87 -25.58 -0.15 -0.82 16 18 C -0.11 -0.74 0.81 -154.04 -0.13 -0.87 16 19 C -0.14 -0.93 6.36 -25.75 -0.16 -1.10 16 20 C 0.04 0.29 7.68 38.14 0.29 0.58 16 21 O -0.38 -3.20 11.68 -35.23 -0.41 -3.61 16 22 C 0.06 0.41 6.79 37.14 0.25 0.66 16 23 C 0.12 1.11 5.72 -3.19 -0.02 1.09 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.44 7.71 -51.93 -0.40 0.04 16 36 H 0.08 0.40 7.75 -51.93 -0.40 0.00 16 37 H 0.08 0.50 7.52 -51.93 -0.39 0.11 16 38 H 0.08 0.62 7.56 -51.93 -0.39 0.23 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.40 7.94 -51.93 -0.41 -0.01 16 42 H 0.10 0.51 7.61 -51.93 -0.40 0.12 16 43 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 44 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -34.49 352.55 -8.65 -43.14 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -7.82 Total: -5.61 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.96 Total: -11.98 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.17 Total: -34.28 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.32 Total: -13.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.49 -8.65 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.712 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds