Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00502 * 2 1 4 4 H 1.48503 * 109.47002 * 270.00230 * 3 2 1 5 5 H 1.48502 * 109.47150 * 29.99784 * 3 2 1 6 6 H 1.48499 * 109.47319 * 150.00084 * 3 2 1 7 7 C 1.37876 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00055 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47249 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47225 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34767 * 120.00026 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00346 * 179.97438 * 15 13 12 17 17 H 1.09008 * 111.01979 * 322.23550 * 16 15 13 18 18 C 1.55305 * 111.12505 * 86.45367 * 16 15 13 19 19 C 1.54387 * 102.24962 * 152.05559 * 18 16 15 20 20 O 1.43236 * 107.59079 * 338.64624 * 19 18 16 21 21 C 1.43643 * 109.97149 * 358.28683 * 20 19 18 22 22 H 1.09001 * 110.31193 * 265.41926 * 21 20 19 23 23 C 1.52998 * 110.30797 * 143.34384 * 21 20 19 24 24 C 1.53011 * 117.49694 * 130.20400 * 23 21 20 25 25 C 1.53001 * 117.49963 * 61.54677 * 23 21 20 26 26 H 0.97004 * 119.99589 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47028 * 59.99968 * 9 7 2 28 28 H 1.08994 * 109.46893 * 299.99815 * 9 7 2 29 29 H 1.09000 * 109.47035 * 60.00366 * 10 9 7 30 30 H 1.08994 * 109.47287 * 299.99723 * 10 9 7 31 31 H 1.09003 * 109.46750 * 60.00040 * 11 10 9 32 32 H 1.09001 * 109.47341 * 300.00552 * 11 10 9 33 33 H 1.09000 * 109.46564 * 60.00328 * 12 11 10 34 34 H 1.09003 * 109.46899 * 300.00783 * 12 11 10 35 35 H 0.97009 * 120.00111 * 0.02562 * 15 13 12 36 36 H 1.08998 * 110.84418 * 33.87046 * 18 16 15 37 37 H 1.09003 * 110.84733 * 270.24456 * 18 16 15 38 38 H 1.09001 * 109.82619 * 98.16119 * 19 18 16 39 39 H 1.09002 * 109.82943 * 219.12673 * 19 18 16 40 40 H 1.08996 * 115.55284 * 275.86594 * 23 21 20 41 41 H 1.08993 * 117.49590 * 359.97438 * 24 23 21 42 42 H 1.08993 * 117.49832 * 145.02016 * 24 23 21 43 43 H 1.09001 * 117.49751 * 214.97944 * 25 23 21 44 44 H 1.08999 * 117.49539 * 359.96935 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 6 5.5514 -2.6369 -0.0022 12 6 6.0613 -4.0794 -0.0028 13 6 7.5683 -4.0795 -0.0033 14 8 8.1748 -3.0291 -0.0029 15 7 8.2421 -5.2466 -0.0033 16 6 9.7071 -5.2468 -0.0045 17 1 10.0977 -4.4427 -0.6283 18 6 10.2680 -5.1566 1.4410 19 6 11.6291 -5.8733 1.3095 20 8 11.5669 -6.7110 0.1494 21 6 10.2652 -6.6215 -0.4513 22 1 9.6255 -7.4266 -0.0899 23 6 10.3789 -6.6783 -1.9760 24 6 9.4748 -7.6668 -2.7154 25 6 10.9751 -7.9450 -2.5932 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6806 0.8888 28 1 3.8744 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8908 30 1 3.6584 -3.1503 0.8892 31 1 5.9154 -2.1227 0.8873 32 1 5.9141 -2.1233 -0.8926 33 1 5.6973 -4.5930 -0.8925 34 1 5.6986 -4.5933 0.8875 35 1 7.7571 -6.0867 -0.0033 36 1 9.6193 -5.6816 2.1421 37 1 10.4041 -4.1173 1.7401 38 1 12.4246 -5.1374 1.1920 39 1 11.8140 -6.4811 2.1952 40 1 10.5947 -5.7295 -2.4671 41 1 8.7995 -8.2768 -2.1156 42 1 9.0964 -7.3684 -3.6930 43 1 11.5831 -7.8295 -3.4905 44 1 11.2868 -8.7376 -1.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = -81.875875 kcal Electronic energy + Delta-G solvation = -21611.877243 eV Core-core repulsion = 18336.085540 eV Total energy + Delta-G solvation = -3275.791703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64633 -39.21563 -37.02870 -35.21777 -34.71261 -32.61354 -31.37189 -30.14718 -29.07919 -25.95778 -23.67192 -22.89377 -22.46750 -21.46628 -21.12537 -20.08492 -20.03388 -17.42502 -17.24561 -16.62627 -16.36201 -15.91008 -15.70653 -15.04708 -14.72886 -14.39214 -14.22259 -14.11875 -13.66618 -13.18086 -12.90866 -12.65516 -12.34018 -12.08999 -11.96210 -11.91645 -11.81315 -11.75767 -11.35591 -11.11930 -10.74967 -10.71429 -10.56549 -10.54371 -10.02650 -9.96464 -9.83403 -9.65410 -9.44028 -9.29778 -9.12282 -8.49642 -6.00851 -3.98323 2.58666 2.77769 3.15832 3.35063 3.42104 3.48025 3.73497 3.95972 4.15022 4.46738 4.49828 4.57050 4.59955 4.63776 4.74414 4.84667 4.87532 5.03446 5.20409 5.27070 5.28239 5.34169 5.35293 5.38932 5.51836 5.58572 5.64686 5.72784 5.77381 5.80233 6.01478 6.12979 6.17509 6.39992 6.55481 6.67118 6.81046 6.98348 7.28983 7.37688 7.50461 7.84510 8.13491 8.58002 9.04126 9.62561 11.12669 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.002633 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.955297 B =10632.445772 C =11098.753670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.534 6.534 15 N -0.725 5.725 16 C 0.122 3.878 17 H 0.105 0.895 18 C -0.171 4.171 19 C 0.052 3.948 20 O -0.370 6.370 21 C 0.108 3.892 22 H 0.076 0.924 23 C -0.158 4.158 24 C -0.171 4.171 25 C -0.166 4.166 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.627 -17.840 -0.760 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.178 4.178 13 C 0.303 3.697 14 O -0.409 6.409 15 N -0.379 5.379 16 C 0.016 3.984 17 H 0.123 0.877 18 C -0.210 4.210 19 C -0.025 4.025 20 O -0.289 6.289 21 C 0.050 3.950 22 H 0.093 0.907 23 C -0.177 4.177 24 C -0.208 4.208 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 24.085 -17.068 -0.832 29.531 hybrid contribution -0.035 0.642 0.146 0.659 sum 24.051 -16.426 -0.686 29.132 Atomic orbital electron populations 1.69924 1.06308 1.26822 1.51482 1.25045 0.94738 0.99233 0.94618 0.86771 0.80424 0.83544 0.78541 1.20314 1.21461 1.18907 1.21185 0.89668 0.94378 1.50505 0.91112 1.19575 0.96910 0.92495 0.96308 1.21477 0.91666 0.99934 1.00938 1.21486 0.97240 0.92793 1.02899 1.21780 0.89922 1.01826 1.04297 1.21119 0.90916 0.83007 0.74623 1.90706 1.70577 1.31266 1.48391 1.45872 1.05623 1.09325 1.77036 1.22545 0.81404 0.98116 0.96301 0.87746 1.23536 0.96724 1.02935 0.97764 1.23104 0.97314 0.93482 0.88614 1.88482 1.31594 1.66577 1.42207 1.22598 0.85078 0.95853 0.91442 0.90653 1.22332 1.06668 0.95867 0.92812 1.23010 0.93611 1.02142 1.02014 1.22861 0.95740 0.98936 1.02722 0.92818 0.96638 0.97057 0.92852 0.92837 0.91809 0.91792 0.88857 0.88929 0.76403 0.90052 0.89154 0.90862 0.91034 0.87228 0.88573 0.88245 0.88646 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 11 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 13 C 0.52 6.47 7.83 -10.99 -0.09 6.38 16 14 O -0.53 -8.94 15.74 5.55 0.09 -8.86 16 15 N -0.72 -6.45 5.24 -51.63 -0.27 -6.72 16 16 C 0.12 1.10 2.78 -65.68 -0.18 0.92 16 17 H 0.10 1.15 7.53 -51.92 -0.39 0.76 16 18 C -0.17 -1.41 6.72 -24.78 -0.17 -1.58 16 19 C 0.05 0.39 7.79 37.88 0.30 0.69 16 20 O -0.37 -3.45 10.99 -35.23 -0.39 -3.84 16 21 C 0.11 0.86 3.25 -25.70 -0.08 0.77 16 22 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 23 C -0.16 -1.23 5.47 -90.61 -0.50 -1.72 16 24 C -0.17 -1.09 10.19 -26.69 -0.27 -1.36 16 25 C -0.17 -1.15 10.20 -26.69 -0.27 -1.42 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 2.46 8.51 -40.82 -0.35 2.11 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 0.92 7.97 -51.93 -0.41 0.50 16 41 H 0.10 0.52 8.07 -51.93 -0.42 0.11 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -33.99 359.62 -9.09 -43.08 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.82 Total: -1.94 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.22 Total: -17.21 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.50 Total: -34.33 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.30 Total: -12.70 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.99 -9.09 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.794 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds