Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00502 * 2 1 4 4 H 1.48503 * 109.47002 * 270.00230 * 3 2 1 5 5 H 1.48502 * 109.47150 * 29.99784 * 3 2 1 6 6 H 1.48499 * 109.47319 * 150.00084 * 3 2 1 7 7 C 1.37876 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00055 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47249 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47225 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34767 * 120.00026 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00346 * 179.97438 * 15 13 12 17 17 H 1.09008 * 111.01979 * 322.23550 * 16 15 13 18 18 C 1.55305 * 111.12505 * 86.45367 * 16 15 13 19 19 C 1.54387 * 102.24962 * 152.05559 * 18 16 15 20 20 O 1.43236 * 107.59079 * 338.64624 * 19 18 16 21 21 C 1.43643 * 109.97149 * 358.28683 * 20 19 18 22 22 H 1.09001 * 110.31193 * 265.41926 * 21 20 19 23 23 C 1.52998 * 110.30797 * 143.34384 * 21 20 19 24 24 C 1.53011 * 117.49694 * 130.20400 * 23 21 20 25 25 C 1.53001 * 117.49963 * 61.54677 * 23 21 20 26 26 H 0.97004 * 119.99589 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47028 * 59.99968 * 9 7 2 28 28 H 1.08994 * 109.46893 * 299.99815 * 9 7 2 29 29 H 1.09000 * 109.47035 * 60.00366 * 10 9 7 30 30 H 1.08994 * 109.47287 * 299.99723 * 10 9 7 31 31 H 1.09003 * 109.46750 * 60.00040 * 11 10 9 32 32 H 1.09001 * 109.47341 * 300.00552 * 11 10 9 33 33 H 1.09000 * 109.46564 * 60.00328 * 12 11 10 34 34 H 1.09003 * 109.46899 * 300.00783 * 12 11 10 35 35 H 0.97009 * 120.00111 * 0.02562 * 15 13 12 36 36 H 1.08998 * 110.84418 * 33.87046 * 18 16 15 37 37 H 1.09003 * 110.84733 * 270.24456 * 18 16 15 38 38 H 1.09001 * 109.82619 * 98.16119 * 19 18 16 39 39 H 1.09002 * 109.82943 * 219.12673 * 19 18 16 40 40 H 1.08996 * 115.55284 * 275.86594 * 23 21 20 41 41 H 1.08993 * 117.49590 * 359.97438 * 24 23 21 42 42 H 1.08993 * 117.49832 * 145.02016 * 24 23 21 43 43 H 1.09001 * 117.49751 * 214.97944 * 25 23 21 44 44 H 1.08999 * 117.49539 * 359.96935 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 6 5.5514 -2.6369 -0.0022 12 6 6.0613 -4.0794 -0.0028 13 6 7.5683 -4.0795 -0.0033 14 8 8.1748 -3.0291 -0.0029 15 7 8.2421 -5.2466 -0.0033 16 6 9.7071 -5.2468 -0.0045 17 1 10.0977 -4.4427 -0.6283 18 6 10.2680 -5.1566 1.4410 19 6 11.6291 -5.8733 1.3095 20 8 11.5669 -6.7110 0.1494 21 6 10.2652 -6.6215 -0.4513 22 1 9.6255 -7.4266 -0.0899 23 6 10.3789 -6.6783 -1.9760 24 6 9.4748 -7.6668 -2.7154 25 6 10.9751 -7.9450 -2.5932 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6806 0.8888 28 1 3.8744 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8908 30 1 3.6584 -3.1503 0.8892 31 1 5.9154 -2.1227 0.8873 32 1 5.9141 -2.1233 -0.8926 33 1 5.6973 -4.5930 -0.8925 34 1 5.6986 -4.5933 0.8875 35 1 7.7571 -6.0867 -0.0033 36 1 9.6193 -5.6816 2.1421 37 1 10.4041 -4.1173 1.7401 38 1 12.4246 -5.1374 1.1920 39 1 11.8140 -6.4811 2.1952 40 1 10.5947 -5.7295 -2.4671 41 1 8.7995 -8.2768 -2.1156 42 1 9.0964 -7.3684 -3.6930 43 1 11.5831 -7.8295 -3.4905 44 1 11.2868 -8.7376 -1.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = -104.108955 kcal Electronic energy + Delta-G solvation = -21612.841342 eV Core-core repulsion = 18336.085540 eV Total energy + Delta-G solvation = -3276.755802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41051 -40.10354 -37.58232 -36.71329 -35.67894 -34.59860 -32.40353 -31.46519 -29.88939 -27.55768 -24.52104 -23.87927 -23.21253 -22.44759 -21.89661 -21.65262 -20.93763 -18.85513 -18.16577 -18.04972 -17.12320 -16.84750 -16.55808 -16.31498 -15.73130 -15.54226 -15.45322 -14.93144 -14.81362 -14.51346 -14.02306 -13.90691 -13.61972 -13.49548 -13.36747 -12.84989 -12.60810 -12.45929 -12.38352 -12.32867 -12.07225 -12.00868 -11.75377 -11.51121 -11.33981 -11.26055 -11.25290 -11.14926 -10.81654 -10.75850 -10.58934 -10.11681 -8.29598 -6.32506 1.34830 1.36285 1.49057 1.62948 2.00983 2.35968 2.52615 3.05940 3.15526 3.35319 3.50798 3.80362 3.85701 4.00423 4.02373 4.05429 4.08430 4.16990 4.21013 4.26511 4.41214 4.63282 4.66613 4.75346 4.78913 4.79634 4.81077 4.87259 4.91316 5.00005 5.03500 5.15857 5.19587 5.21185 5.26374 5.29060 5.41712 5.61665 5.66722 5.69284 5.93615 6.29859 6.51529 6.75665 7.24975 7.32399 8.87015 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.002633 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.955297 B =10632.445772 C =11098.753670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.517 3.483 14 O -0.583 6.583 15 N -0.704 5.704 16 C 0.120 3.880 17 H 0.080 0.920 18 C -0.167 4.167 19 C 0.052 3.948 20 O -0.386 6.386 21 C 0.116 3.884 22 H 0.094 0.906 23 C -0.175 4.175 24 C -0.160 4.160 25 C -0.167 4.167 26 H 0.266 0.734 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.921 -19.079 -0.586 31.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.170 4.170 13 C 0.305 3.695 14 O -0.462 6.462 15 N -0.358 5.358 16 C 0.014 3.986 17 H 0.098 0.902 18 C -0.206 4.206 19 C -0.024 4.024 20 O -0.306 6.306 21 C 0.058 3.942 22 H 0.112 0.888 23 C -0.193 4.193 24 C -0.197 4.197 25 C -0.204 4.204 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 25.389 -18.369 -0.659 31.344 hybrid contribution -0.465 0.951 0.078 1.061 sum 24.924 -17.419 -0.581 30.413 Atomic orbital electron populations 1.70063 1.08123 1.28065 1.52934 1.25993 0.95612 1.03394 0.94328 0.85697 0.79391 0.78650 0.79164 1.19249 1.20773 1.17591 1.21553 0.92141 0.93205 1.49881 0.94421 1.19580 0.93866 0.95993 0.96048 1.21339 0.93755 0.96645 1.01393 1.21283 0.94773 0.95830 1.01721 1.21683 0.89465 0.99082 1.06757 1.21171 0.91127 0.83099 0.74057 1.90698 1.71419 1.33142 1.50972 1.45632 1.05689 1.09155 1.75325 1.22504 0.81192 0.98283 0.96605 0.90173 1.23490 0.97393 1.02398 0.97288 1.23175 0.96869 0.93625 0.88770 1.88464 1.32398 1.66881 1.42827 1.22601 0.84767 0.95323 0.91466 0.88837 1.22328 1.08345 0.95772 0.92864 1.23101 0.93432 1.01083 1.02063 1.22906 0.96453 0.98299 1.02746 0.92529 0.96846 0.96959 0.92396 0.92394 0.93064 0.93052 0.86406 0.86404 0.74336 0.88936 0.90524 0.90772 0.89351 0.88577 0.87116 0.87962 0.88384 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.49 13.96 21.45 0.30 -60.20 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 7 C -0.53 -31.09 9.66 25.60 0.25 -30.85 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.52 5.15 30.60 0.16 -3.37 16 11 C -0.10 -3.08 4.50 30.59 0.14 -2.94 16 12 C -0.13 -2.76 5.70 29.85 0.17 -2.59 16 13 C 0.52 12.08 7.83 87.66 0.69 12.77 16 14 O -0.58 -19.34 15.74 -3.05 -0.05 -19.39 16 15 N -0.70 -10.98 5.24 -435.65 -2.28 -13.26 16 16 C 0.12 2.03 2.78 46.45 0.13 2.16 16 17 H 0.08 1.79 7.53 -2.38 -0.02 1.77 16 18 C -0.17 -2.55 6.72 31.86 0.21 -2.34 16 19 C 0.05 0.72 7.79 72.45 0.56 1.28 16 20 O -0.39 -6.64 10.99 -148.98 -1.64 -8.28 16 21 C 0.12 1.63 3.25 31.26 0.10 1.73 16 22 H 0.09 0.98 7.79 -2.39 -0.02 0.97 16 23 C -0.17 -2.48 5.47 -10.79 -0.06 -2.54 16 24 C -0.16 -1.68 10.19 30.62 0.31 -1.37 16 25 C -0.17 -2.05 10.20 30.62 0.31 -1.74 16 26 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 28 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 3.67 8.51 -92.70 -0.79 2.89 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.60 7.97 -2.39 -0.02 1.59 16 41 H 0.11 0.84 8.07 -2.39 -0.02 0.82 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.57 359.62 1.89 -72.68 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.12 Total: 10.51 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.56 Total: -29.84 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.98 Total: -73.45 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.69 Total: -27.67 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -74.57 1.89 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds