Wall clock time and date at job start Tue Mar 31 2020 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48495 * 109.47130 * 270.00197 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00149 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00283 * 3 2 1 7 7 C 1.37876 * 119.99471 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00057 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47606 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47524 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47524 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47265 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00132 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00207 * 179.97438 * 15 13 12 17 17 H 1.08997 * 110.56392 * 333.95147 * 16 15 13 18 18 C 1.54503 * 110.51037 * 96.63088 * 16 15 13 19 19 C 1.54483 * 104.06673 * 118.64642 * 18 16 15 20 20 O 1.44426 * 104.79884 * 336.02096 * 19 18 16 21 21 C 1.44420 * 105.27772 * 40.50916 * 20 19 18 22 22 H 1.09003 * 110.37324 * 78.42918 * 21 20 19 23 23 C 1.53004 * 110.37307 * 200.65676 * 21 20 19 24 24 C 1.53000 * 117.49979 * 294.41210 * 23 21 20 25 25 C 1.52999 * 117.49797 * 225.78808 * 23 21 20 26 26 H 0.97008 * 119.99264 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47544 * 59.99511 * 9 7 2 28 28 H 1.09003 * 109.46987 * 299.99984 * 9 7 2 29 29 H 1.09010 * 109.46903 * 59.99679 * 10 9 7 30 30 H 1.08996 * 109.46870 * 300.00185 * 10 9 7 31 31 H 1.09010 * 109.46915 * 60.00149 * 11 10 9 32 32 H 1.09003 * 109.47405 * 300.00526 * 11 10 9 33 33 H 1.09001 * 109.46793 * 59.99851 * 12 11 10 34 34 H 1.08996 * 109.46870 * 300.00647 * 12 11 10 35 35 H 0.97009 * 119.99951 * 0.02562 * 15 13 12 36 36 H 1.09000 * 110.51668 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.62824 * 237.34819 * 18 16 15 38 38 H 1.09000 * 110.37185 * 217.18980 * 19 18 16 39 39 H 1.08995 * 110.46786 * 94.89400 * 19 18 16 40 40 H 1.09002 * 115.56143 * 80.10664 * 23 21 20 41 41 H 1.09000 * 117.49778 * 145.02303 * 24 23 21 42 42 H 1.09000 * 117.49533 * 0.02562 * 24 23 21 43 43 H 1.08999 * 117.49955 * 0.02562 * 25 23 21 44 44 H 1.08997 * 117.52285 * 214.96644 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 6 4.0214 -2.6368 -0.0001 11 6 5.5513 -2.6369 -0.0001 12 6 6.0613 -4.0794 0.0004 13 6 7.5683 -4.0795 0.0010 14 8 8.1747 -3.0292 0.0005 15 7 8.2421 -5.2467 0.0020 16 6 9.7071 -5.2468 0.0020 17 1 10.0900 -4.3304 -0.4469 18 6 10.2484 -5.4126 1.4396 19 6 11.0527 -6.7306 1.3882 20 8 10.4839 -7.4670 0.2837 21 6 10.2483 -6.4842 -0.7479 22 1 11.1790 -6.2419 -1.2610 23 6 9.2092 -6.9985 -1.7463 24 6 9.5876 -8.2124 -2.5974 25 6 9.5134 -6.8237 -3.2355 26 1 -0.4849 0.8402 0.0004 27 1 3.8745 -0.6810 0.8905 28 1 3.8751 -0.6799 -0.8895 29 1 3.6583 -3.1504 -0.8904 30 1 3.6577 -3.1507 0.8896 31 1 5.9147 -2.1231 0.8900 32 1 5.9147 -2.1229 -0.8900 33 1 5.6979 -4.5935 -0.8894 34 1 5.6979 -4.5929 0.8905 35 1 7.7570 -6.0868 0.0020 36 1 9.4261 -5.4941 2.1504 37 1 10.8986 -4.5785 1.7037 38 1 10.9304 -7.2862 2.3179 39 1 12.1076 -6.5264 1.2049 40 1 8.1696 -6.9092 -1.4311 41 1 8.7968 -8.9216 -2.8421 42 1 10.5766 -8.6447 -2.4457 43 1 10.4539 -6.3427 -3.5040 44 1 8.6741 -6.6197 -3.9004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:08 Heat of formation + Delta-G solvation = -74.356428 kcal Electronic energy + Delta-G solvation = -21800.639571 eV Core-core repulsion = 18525.173935 eV Total energy + Delta-G solvation = -3275.465635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75000 -39.10196 -37.02941 -35.15893 -34.60358 -32.59928 -31.36042 -30.12906 -28.95203 -25.91835 -23.94325 -22.80751 -22.45394 -21.76322 -20.77127 -20.02779 -19.93921 -17.55438 -16.89655 -16.56540 -16.31668 -15.91551 -15.83377 -15.32037 -14.79059 -14.31623 -14.14550 -14.09479 -13.70074 -13.01912 -12.64492 -12.53565 -12.27501 -12.12012 -11.93820 -11.88497 -11.78265 -11.74316 -11.29503 -11.10743 -10.73809 -10.70516 -10.53483 -10.49700 -10.26919 -9.97910 -9.81576 -9.64176 -9.41673 -9.23257 -9.11265 -8.48844 -6.00089 -3.97496 2.62906 2.98020 3.11079 3.35639 3.42604 3.48675 3.76588 4.01907 4.20632 4.44861 4.50541 4.59954 4.61133 4.72206 4.78939 4.83316 4.92572 5.08974 5.21697 5.27763 5.30248 5.30262 5.33492 5.35101 5.51140 5.54610 5.65235 5.74130 5.77940 5.79914 6.03275 6.15571 6.22887 6.39948 6.44032 6.68722 6.82651 6.99721 7.35047 7.38848 7.51575 7.85406 8.18256 8.58944 9.04983 9.63352 11.13461 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028526 B = 0.002765 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.341187 B =10122.796875 C =10557.135366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.514 3.486 14 O -0.537 6.537 15 N -0.725 5.725 16 C 0.119 3.881 17 H 0.107 0.893 18 C -0.169 4.169 19 C 0.044 3.956 20 O -0.365 6.365 21 C 0.097 3.903 22 H 0.080 0.920 23 C -0.155 4.155 24 C -0.167 4.167 25 C -0.169 4.169 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.313 -17.487 -1.348 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.302 3.698 14 O -0.413 6.413 15 N -0.380 5.380 16 C 0.013 3.987 17 H 0.125 0.875 18 C -0.208 4.208 19 C -0.033 4.033 20 O -0.284 6.284 21 C 0.039 3.961 22 H 0.098 0.902 23 C -0.174 4.174 24 C -0.204 4.204 25 C -0.206 4.206 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.239 0.761 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.542 -16.823 -1.355 29.785 hybrid contribution 0.161 0.707 0.101 0.733 sum 24.704 -16.115 -1.254 29.522 Atomic orbital electron populations 1.69928 1.06311 1.26812 1.51509 1.25045 0.94736 0.99229 0.94620 0.86768 0.80426 0.83540 0.78535 1.20315 1.21466 1.18903 1.21190 0.89683 0.94383 1.50477 0.91112 1.19574 0.96893 0.92499 0.96297 1.21478 0.91705 0.99919 1.00931 1.21478 0.97199 0.92806 1.02873 1.21781 0.90121 1.01786 1.04228 1.21123 0.90916 0.83153 0.74639 1.90692 1.70561 1.31327 1.48674 1.46197 1.06043 1.09171 1.76561 1.22189 0.81606 0.99714 0.95175 0.87469 1.23433 1.01189 0.98499 0.97669 1.23423 0.96770 0.92171 0.90916 1.89191 1.83037 1.30947 1.25235 1.22797 0.96889 0.87322 0.89063 0.90210 1.22166 0.99535 1.04099 0.91560 1.22879 1.03319 0.91047 1.03112 1.22991 1.03584 1.00098 0.93973 0.92823 0.96643 0.97065 0.92872 0.92845 0.91831 0.91798 0.88972 0.88979 0.76102 0.89835 0.89706 0.88797 0.92070 0.86934 0.88497 0.88546 0.88648 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.14 -1.73 5.70 -27.89 -0.16 -1.89 16 13 C 0.51 6.66 7.83 -10.99 -0.09 6.57 16 14 O -0.54 -9.11 15.54 5.56 0.09 -9.02 16 15 N -0.73 -6.95 4.11 -52.29 -0.21 -7.17 16 16 C 0.12 1.08 3.44 -66.36 -0.23 0.85 16 17 H 0.11 1.13 7.38 -51.93 -0.38 0.74 16 18 C -0.17 -1.34 6.88 -25.16 -0.17 -1.51 16 19 C 0.04 0.30 7.63 37.94 0.29 0.59 16 20 O -0.37 -3.26 11.34 -35.23 -0.40 -3.66 16 21 C 0.10 0.78 3.40 -25.95 -0.09 0.69 16 22 H 0.08 0.58 7.98 -51.93 -0.41 0.16 16 23 C -0.16 -1.19 5.04 -90.62 -0.46 -1.64 16 24 C -0.17 -1.15 10.25 -26.73 -0.27 -1.43 16 25 C -0.17 -1.18 10.19 -26.73 -0.27 -1.45 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.13 8.10 -51.92 -0.42 0.71 16 32 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.09 6.83 -40.82 -0.28 2.81 16 36 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.84 5.81 -51.93 -0.30 0.54 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -34.02 355.08 -8.95 -42.97 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.63 Total: -1.08 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.25 Total: -17.43 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.56 Total: -34.89 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.31 Total: -12.68 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.02 -8.95 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.384 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds