Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00217 * 179.97438 * 15 13 12 17 17 H 1.09008 * 110.80461 * 34.29448 * 16 15 13 18 18 C 1.54808 * 110.91015 * 270.66882 * 16 15 13 19 19 C 1.54091 * 104.19238 * 220.92082 * 18 16 15 20 20 O 1.43745 * 107.29305 * 357.96597 * 19 18 16 21 21 C 1.44422 * 107.00048 * 26.49236 * 20 19 18 22 22 H 1.08994 * 110.60142 * 78.46570 * 21 20 19 23 23 C 1.52992 * 110.65506 * 201.48434 * 21 20 19 24 24 C 1.53003 * 117.49922 * 2.68064 * 23 21 20 25 25 C 1.52995 * 60.00378 * 252.51291 * 24 23 21 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.96998 * 119.99962 * 359.97438 * 15 13 12 36 36 H 1.09003 * 110.48622 * 339.59998 * 18 16 15 37 37 H 1.09001 * 110.48967 * 102.10553 * 18 16 15 38 38 H 1.09001 * 109.88584 * 117.39350 * 19 18 16 39 39 H 1.09000 * 109.88131 * 238.39669 * 19 18 16 40 40 H 1.09001 * 115.55540 * 148.39836 * 23 21 20 41 41 H 1.09000 * 117.49959 * 0.02562 * 24 23 21 42 42 H 1.09008 * 117.49685 * 145.02324 * 24 23 21 43 43 H 1.08995 * 117.50074 * 252.50781 * 25 24 23 44 44 H 1.09002 * 117.49925 * 107.48451 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 1.7213 -7.4551 0.0018 14 8 0.5085 -7.4551 0.0018 15 7 2.3952 -8.6222 0.0029 16 6 1.6628 -9.8910 0.0034 17 1 0.7404 -9.8058 -0.5711 18 6 1.3714 -10.3601 1.4497 19 6 1.6247 -11.8796 1.4123 20 8 1.9717 -12.2218 0.0599 21 6 2.5485 -11.0413 -0.5396 22 1 3.5822 -10.9141 -0.2184 23 6 2.4618 -11.1136 -2.0654 24 6 1.7575 -12.3267 -2.6763 25 6 3.2793 -12.1989 -2.7688 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.1014 -6.0927 -0.8882 34 1 3.1014 -6.0917 0.8918 35 1 3.3652 -8.6222 0.0032 36 1 2.0512 -9.8771 2.1517 37 1 0.3358 -10.1504 1.7174 38 1 2.4462 -12.1351 2.0816 39 1 0.7229 -12.4132 1.7122 40 1 2.3508 -10.1569 -2.5759 41 1 1.3555 -13.0732 -1.9911 42 1 1.1827 -12.1683 -3.5888 43 1 3.7057 -11.9565 -3.7421 44 1 3.8789 -12.8614 -2.1445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = -88.586882 kcal Electronic energy + Delta-G solvation = -21572.788099 eV Core-core repulsion = 18296.705385 eV Total energy + Delta-G solvation = -3276.082714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66086 -39.23582 -36.84389 -35.25306 -34.74246 -32.86226 -31.28590 -29.78054 -28.82827 -25.34747 -23.95609 -22.71984 -22.62777 -21.51262 -20.92093 -20.32686 -20.07620 -17.39065 -17.16749 -16.59636 -16.55278 -15.75117 -15.61100 -15.26563 -14.75510 -14.30078 -14.13707 -13.73453 -13.63245 -13.22509 -12.85680 -12.75950 -12.36609 -12.30781 -11.95996 -11.80319 -11.75496 -11.26071 -11.12254 -10.95383 -10.67845 -10.64616 -10.58550 -10.55790 -10.09590 -10.04795 -9.95069 -9.75599 -9.54932 -9.28940 -8.46650 -8.27400 -6.30717 -3.99409 2.59644 2.82669 3.40166 3.45787 3.46974 3.48268 3.67083 4.02082 4.26344 4.53943 4.57712 4.58732 4.59968 4.64527 4.77021 4.86984 4.95101 5.10445 5.21698 5.27304 5.33818 5.35550 5.37388 5.46625 5.56917 5.61909 5.65440 5.77954 5.79046 5.92101 6.02225 6.14773 6.18402 6.40976 6.46366 6.70055 6.86861 7.03633 7.30022 7.49489 7.62422 8.14811 8.28327 8.52214 8.94462 9.73388 11.10053 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035377 B = 0.002418 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.294993 B =11574.750949 C =11907.762253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.532 6.532 15 N -0.728 5.728 16 C 0.122 3.878 17 H 0.106 0.894 18 C -0.171 4.171 19 C 0.049 3.951 20 O -0.366 6.366 21 C 0.104 3.896 22 H 0.078 0.922 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.174 4.174 26 H 0.269 0.731 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 -27.315 -0.661 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.407 6.407 15 N -0.382 5.382 16 C 0.016 3.984 17 H 0.124 0.876 18 C -0.210 4.210 19 C -0.028 4.028 20 O -0.285 6.285 21 C 0.046 3.954 22 H 0.096 0.904 23 C -0.177 4.177 24 C -0.200 4.200 25 C -0.211 4.211 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.112 -25.869 -0.760 26.840 hybrid contribution 0.760 -1.522 0.223 1.715 sum 7.872 -27.391 -0.538 28.505 Atomic orbital electron populations 1.70767 1.06896 1.30671 1.46749 1.25866 0.96600 1.02755 0.93927 0.83549 0.74871 0.75408 0.76427 1.20790 1.21497 1.21497 1.22082 0.94205 0.92190 1.55571 0.93431 1.19223 0.94704 0.93109 0.96006 1.21519 0.98799 0.93450 1.00316 1.21467 0.97082 0.92807 1.02888 1.21785 1.00054 0.91822 1.04141 1.21118 0.88476 0.85486 0.74696 1.90714 1.14228 1.87571 1.48189 1.45973 1.10074 1.05039 1.77145 1.22411 0.96821 0.83285 0.95900 0.87574 1.23350 1.04112 0.95720 0.97786 1.23121 1.00719 0.94762 0.84181 1.88904 1.81304 1.32937 1.25326 1.22704 0.96435 0.84289 0.92014 0.90426 1.22289 1.07580 0.95576 0.92287 1.22887 0.94754 1.00038 1.02343 1.22960 0.94564 1.01704 1.01868 0.92039 0.97514 0.97505 0.93278 0.93303 0.91861 0.91829 0.88991 0.89024 0.76453 0.90074 0.89639 0.92119 0.89460 0.86510 0.87606 0.88898 0.88691 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.95 13.65 55.43 0.76 -28.19 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 8 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 9 C 0.01 0.17 4.28 -27.88 -0.12 0.06 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.27 16 11 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 13 C 0.51 6.80 7.83 -10.99 -0.09 6.71 16 14 O -0.53 -9.37 15.67 5.56 0.09 -9.28 16 15 N -0.73 -6.78 5.15 -51.86 -0.27 -7.05 16 16 C 0.12 1.15 2.88 -65.92 -0.19 0.96 16 17 H 0.11 1.26 7.54 -51.92 -0.39 0.87 16 18 C -0.17 -1.45 6.76 -25.21 -0.17 -1.62 16 19 C 0.05 0.36 7.70 37.73 0.29 0.65 16 20 O -0.37 -3.33 9.68 -35.23 -0.34 -3.67 16 21 C 0.10 0.83 3.32 -25.68 -0.09 0.75 16 22 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 23 C -0.16 -1.28 5.73 -90.62 -0.52 -1.80 16 24 C -0.16 -1.31 9.90 -26.73 -0.26 -1.57 16 25 C -0.17 -1.24 10.25 -26.73 -0.27 -1.51 16 26 H 0.27 8.53 7.22 -40.82 -0.29 8.23 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 2.56 8.55 -40.82 -0.35 2.21 16 36 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.11 0.92 7.08 -51.93 -0.37 0.55 16 42 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -34.48 359.92 -9.43 -43.91 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.76 Total: -0.59 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.25 Total: -21.25 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.49 Total: -35.24 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.25 Total: -12.95 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.48 -9.43 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.676 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds