Wall clock time and date at job start Tue Mar 31 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00146 * 180.02562 * 13 12 11 16 16 C 1.47119 * 121.04448 * 359.71211 * 15 13 12 17 17 C 1.52803 * 108.94244 * 232.14890 * 16 15 13 18 18 O 1.43086 * 109.41775 * 306.15733 * 17 16 15 19 19 C 1.42580 * 113.96105 * 59.97977 * 18 17 16 20 20 C 1.53369 * 113.66884 * 72.58243 * 19 18 17 21 21 C 1.53849 * 86.96618 * 89.64199 * 20 19 18 22 22 C 1.53352 * 113.70939 * 170.65316 * 19 18 17 23 23 C 1.47324 * 121.04547 * 180.02562 * 15 13 12 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 32 32 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 33 33 H 1.08999 * 109.60036 * 351.97449 * 16 15 13 34 34 H 1.08999 * 109.59533 * 112.43197 * 16 15 13 35 35 H 1.09001 * 109.56173 * 186.10675 * 17 16 15 36 36 H 1.09001 * 109.36908 * 66.08833 * 17 16 15 37 37 H 1.09000 * 113.63572 * 204.16109 * 20 19 18 38 38 H 1.08998 * 113.63126 * 335.12203 * 20 19 18 39 39 H 1.09004 * 113.60190 * 270.56884 * 21 20 19 40 40 H 1.08994 * 113.60692 * 139.69230 * 21 20 19 41 41 H 1.08995 * 113.63319 * 24.91268 * 22 19 18 42 42 H 1.09005 * 113.63622 * 155.79091 * 22 19 18 43 43 H 1.08996 * 109.74524 * 251.10056 * 23 15 13 44 44 H 1.09004 * 109.74404 * 11.82324 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 8 0.5082 -7.4551 -0.0018 15 7 2.3948 -8.6224 -0.0018 16 6 3.8658 -8.6492 -0.0082 17 6 4.3406 -9.5478 -1.1492 18 8 3.7189 -10.8314 -1.0340 19 6 2.2948 -10.7923 -1.0919 20 6 1.7433 -10.5013 -2.4931 21 6 1.7524 -12.0224 -2.7235 22 6 1.6437 -12.1768 -1.1965 23 6 1.6816 -9.9115 -0.0024 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.8533 -5.0451 0.8886 30 1 0.8538 -5.0445 -0.8914 31 1 3.1011 -6.0919 -0.8918 32 1 3.1011 -6.0928 0.8882 33 1 4.2493 -7.6396 -0.1557 34 1 4.2282 -9.0453 0.9404 35 1 5.4233 -9.6621 -1.0974 36 1 4.0678 -9.0958 -2.1028 37 1 0.7439 -10.0662 -2.4877 38 1 2.4392 -9.9583 -3.1325 39 1 2.6905 -12.3960 -3.1342 40 1 0.8782 -12.3876 -3.2624 41 1 2.2596 -12.9809 -0.7937 42 1 0.6172 -12.2058 -0.8309 43 1 1.7937 -10.3947 0.9681 44 1 0.6248 -9.7475 -0.2130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588663391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:43 Heat of formation + Delta-G solvation = -75.412065 kcal Electronic energy + Delta-G solvation = -22211.374392 eV Core-core repulsion = 18935.862981 eV Total energy + Delta-G solvation = -3275.511411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09226 -39.25843 -36.70921 -35.02765 -34.80263 -32.64885 -30.68280 -29.77637 -27.83599 -26.21282 -25.47228 -24.09865 -22.98808 -21.80242 -20.03561 -19.61616 -19.07118 -17.25580 -16.82302 -16.26658 -16.14559 -15.91944 -15.46235 -15.14192 -14.83634 -14.45913 -14.35507 -13.79779 -13.73001 -13.31481 -12.74925 -12.70284 -12.35316 -12.17140 -11.87972 -11.62103 -11.55585 -11.44501 -11.27372 -11.18079 -10.97426 -10.66200 -10.53855 -10.53633 -10.40418 -10.16375 -9.77229 -9.61439 -9.22568 -8.99209 -8.69882 -8.30180 -5.94976 -3.97692 2.63825 2.71398 3.19214 3.35222 3.39656 3.41782 4.13506 4.24748 4.32849 4.47157 4.47597 4.51305 4.63731 4.69545 4.89987 5.02440 5.18674 5.23150 5.28465 5.32530 5.35570 5.40247 5.41002 5.43399 5.46500 5.58277 5.68488 5.79304 5.83026 5.92780 6.12127 6.18102 6.30557 6.53783 6.82725 6.82964 7.00124 7.17811 7.24255 7.73857 7.90066 8.06224 8.15229 8.47859 9.09812 9.65878 11.16353 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.002701 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.647517 B =10365.069845 C =10631.053972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.517 3.483 14 O -0.533 6.533 15 N -0.623 5.623 16 C 0.072 3.928 17 C 0.046 3.954 18 O -0.354 6.354 19 C 0.078 3.922 20 C -0.160 4.160 21 C -0.134 4.134 22 C -0.121 4.121 23 C 0.099 3.901 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -25.806 -2.712 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.307 3.693 14 O -0.408 6.408 15 N -0.359 5.359 16 C -0.051 4.051 17 C -0.032 4.032 18 O -0.273 6.273 19 C 0.037 3.963 20 C -0.198 4.198 21 C -0.171 4.171 22 C -0.159 4.159 23 C -0.024 4.024 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.595 -25.827 -2.682 27.054 hybrid contribution 0.509 1.214 0.015 1.317 sum 8.103 -24.612 -2.667 26.049 Atomic orbital electron populations 1.69963 1.06054 1.26638 1.50830 1.25041 0.94841 0.99221 0.95447 0.86669 0.79576 0.83254 0.78545 1.20287 1.21312 1.20279 1.21246 0.92935 0.91213 1.50557 0.92814 1.19088 0.94046 0.91239 0.97311 1.21648 0.99079 0.93976 1.00037 1.21468 0.97009 0.92675 1.02983 1.21826 1.00171 0.91964 1.03756 1.21132 0.88227 0.85203 0.74782 1.90695 1.14095 1.87090 1.48928 1.48259 1.06515 1.05886 1.75200 1.22315 0.80438 1.02317 1.00043 1.22923 0.98286 0.84221 0.97725 1.87909 1.17211 1.28315 1.93816 1.22622 0.81950 0.97084 0.94635 1.23455 1.02237 0.97270 0.96812 1.22794 1.02406 0.95969 0.95973 1.22914 1.00796 0.95097 0.97076 1.22120 0.98414 0.83177 0.98695 0.92974 0.96597 0.96598 0.93470 0.93505 0.91765 0.91807 0.89211 0.89113 0.88140 0.90460 0.87336 0.92346 0.89024 0.91046 0.89805 0.91095 0.90199 0.88461 0.91062 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.85 4.07 -27.88 -0.11 -1.97 16 13 C 0.52 7.47 7.71 -10.98 -0.08 7.39 16 14 O -0.53 -9.79 15.47 5.56 0.09 -9.70 16 15 N -0.62 -7.04 3.03 -172.68 -0.52 -7.56 16 16 C 0.07 0.59 6.48 -3.81 -0.02 0.56 16 17 C 0.05 0.35 6.86 37.06 0.25 0.60 16 18 O -0.35 -3.38 10.44 -35.23 -0.37 -3.74 16 19 C 0.08 0.71 1.12 -90.28 -0.10 0.61 16 20 C -0.16 -1.44 7.23 -26.10 -0.19 -1.63 16 21 C -0.13 -0.99 8.03 -25.84 -0.21 -1.20 16 22 C -0.12 -0.89 7.47 -26.10 -0.20 -1.08 16 23 C 0.10 1.03 5.77 -3.62 -0.02 1.01 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 32 H 0.09 1.06 8.00 -51.93 -0.42 0.65 16 33 H 0.10 0.69 6.03 -51.93 -0.31 0.37 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.46 7.11 -51.93 -0.37 0.09 16 37 H 0.09 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.20 6.91 -51.93 -0.36 0.84 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -33.93 349.64 -8.98 -42.91 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.67 Total: -3.65 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.49 Total: -13.54 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.21 Total: -34.46 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.28 Total: -13.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.93 -8.98 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588663391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.504 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds