Wall clock time and date at job start Tue Mar 31 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48502 * 109.47228 * 270.00143 * 3 2 1 5 5 H 1.48502 * 109.47025 * 30.00018 * 3 2 1 6 6 H 1.48498 * 109.47089 * 149.99717 * 3 2 1 7 7 C 1.37870 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99858 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46862 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46862 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47328 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99619 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99984 * 179.97438 * 13 12 11 16 16 C 1.47414 * 121.27961 * 353.63498 * 15 13 12 17 17 C 1.53285 * 108.23822 * 131.86664 * 16 15 13 18 18 O 1.42918 * 109.58908 * 54.14055 * 17 16 15 19 19 C 1.43191 * 114.15356 * 295.74900 * 18 17 16 20 20 C 1.46701 * 121.27186 * 173.65485 * 15 13 12 21 21 C 1.53197 * 113.67781 * 95.36769 * 20 15 13 22 22 C 1.53885 * 86.90592 * 270.15451 * 21 20 15 23 23 C 1.53174 * 113.72195 * 357.06222 * 20 15 13 24 24 H 0.97000 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47413 * 59.99489 * 9 7 2 26 26 H 1.08998 * 109.46580 * 299.99584 * 9 7 2 27 27 H 1.09005 * 109.46990 * 59.99897 * 10 9 7 28 28 H 1.09000 * 109.47058 * 299.99991 * 10 9 7 29 29 H 1.09005 * 109.46996 * 60.00398 * 11 10 9 30 30 H 1.09000 * 109.47682 * 300.00106 * 11 10 9 31 31 H 1.08996 * 109.47018 * 60.00134 * 12 11 10 32 32 H 1.08998 * 109.47313 * 300.00021 * 12 11 10 33 33 H 1.09001 * 109.70941 * 12.18444 * 16 15 13 34 34 H 1.08997 * 109.74843 * 251.57916 * 16 15 13 35 35 H 1.08991 * 109.45476 * 294.09992 * 17 16 15 36 36 H 1.08999 * 109.42944 * 174.15993 * 17 16 15 37 37 H 1.08993 * 109.57335 * 179.67486 * 19 18 17 38 38 H 1.08995 * 109.56878 * 300.03981 * 19 18 17 39 39 H 1.08997 * 113.64279 * 24.66285 * 21 20 15 40 40 H 1.09004 * 113.63866 * 155.65531 * 21 20 15 41 41 H 1.09007 * 113.60301 * 220.42746 * 22 21 20 42 42 H 1.09003 * 113.59890 * 89.57893 * 22 21 20 43 43 H 1.09001 * 113.64686 * 204.31272 * 23 20 15 44 44 H 1.09003 * 113.64207 * 335.21122 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 6 6.0615 -4.0790 0.0004 13 6 7.5686 -4.0790 0.0010 14 8 8.1749 -3.0286 0.0014 15 7 8.2424 -5.2461 0.0020 16 6 7.5407 -6.5349 0.1423 17 6 8.0581 -7.4837 -0.9448 18 8 9.4830 -7.5661 -0.8705 19 6 10.1564 -6.3334 -1.1486 20 6 9.7025 -5.2827 -0.1360 21 6 10.4454 -5.3509 1.2021 22 6 10.4450 -3.8121 1.1856 23 6 10.3362 -3.9042 -0.3466 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6807 0.8904 26 1 3.8751 -0.6796 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8897 29 1 5.9148 -2.1227 0.8900 30 1 5.9149 -2.1225 -0.8900 31 1 5.6982 -4.5931 -0.8894 32 1 5.6983 -4.5925 0.8905 33 1 6.4681 -6.3848 0.0191 34 1 7.7419 -6.9586 1.1262 35 1 7.7670 -7.1059 -1.9249 36 1 7.6290 -8.4745 -0.7956 37 1 11.2334 -6.4790 -1.0659 38 1 9.9076 -6.0008 -2.1563 39 1 9.8524 -5.7796 2.0099 40 1 11.4409 -5.7885 1.1274 41 1 11.3804 -3.3717 1.5311 42 1 9.5682 -3.3709 1.6596 43 1 11.3013 -3.9393 -0.8521 44 1 9.6561 -3.1724 -0.7827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588950913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:49 Heat of formation + Delta-G solvation = -53.759529 kcal Electronic energy + Delta-G solvation = -22738.169453 eV Core-core repulsion = 19463.596966 eV Total energy + Delta-G solvation = -3274.572487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52012 -38.63610 -37.39157 -35.04311 -34.72358 -32.53820 -30.29173 -30.13610 -27.93021 -26.09733 -25.87780 -24.03247 -22.70290 -21.84887 -20.32887 -20.03360 -18.49137 -17.42951 -16.76091 -16.57173 -16.08186 -15.97698 -15.56630 -15.33948 -14.76078 -14.49650 -14.17739 -13.88695 -13.75071 -13.29920 -12.72709 -12.67485 -12.34975 -12.23395 -12.08478 -11.87101 -11.72780 -11.36346 -11.21162 -11.02506 -10.85360 -10.73695 -10.59155 -10.55302 -10.28902 -9.87551 -9.67459 -9.56499 -9.14164 -9.05280 -8.67570 -8.50461 -6.01618 -3.99222 2.51236 2.57919 3.34386 3.38297 3.41519 3.47284 4.21169 4.28489 4.39573 4.49065 4.53411 4.61144 4.76695 4.82640 4.83416 5.05307 5.10589 5.16982 5.18299 5.23127 5.33238 5.34765 5.41195 5.49357 5.62127 5.71242 5.80520 5.98792 6.02546 6.03417 6.10472 6.22405 6.38769 6.61452 6.65350 6.68814 6.78607 6.96692 7.19688 7.36282 7.49153 7.83584 8.11845 8.57071 9.03225 9.61747 11.11912 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.003305 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.753807 B = 8471.057121 C = 9128.453675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.519 3.481 14 O -0.518 6.518 15 N -0.602 5.602 16 C 0.073 3.927 17 C 0.047 3.953 18 O -0.379 6.379 19 C 0.069 3.931 20 C 0.112 3.888 21 C -0.142 4.142 22 C -0.128 4.128 23 C -0.155 4.155 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.976 -16.161 -0.717 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.179 4.179 13 C 0.309 3.691 14 O -0.395 6.395 15 N -0.337 5.337 16 C -0.050 4.050 17 C -0.031 4.031 18 O -0.297 6.297 19 C -0.008 4.008 20 C 0.026 3.974 21 C -0.180 4.180 22 C -0.165 4.165 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 22.216 -15.633 -0.669 27.173 hybrid contribution 0.145 0.920 -0.004 0.931 sum 22.361 -14.714 -0.673 26.776 Atomic orbital electron populations 1.69920 1.06313 1.26844 1.51447 1.25041 0.94732 0.99229 0.94598 0.86773 0.80424 0.83554 0.78541 1.20307 1.21439 1.18917 1.21181 0.89663 0.94381 1.50556 0.91121 1.19571 0.96914 0.92448 0.96299 1.21476 0.91663 0.99967 1.00898 1.21487 0.97240 0.92672 1.02902 1.21845 0.90278 1.01823 1.03959 1.21078 0.90673 0.82435 0.74889 1.90510 1.68955 1.31493 1.48546 1.47796 1.05634 1.06360 1.73895 1.22506 0.98250 0.83874 1.00324 1.22954 0.81711 1.00526 0.97911 1.87988 1.18246 1.31980 1.91465 1.22901 0.97603 0.83485 0.96857 1.21867 0.80723 0.97995 0.96797 1.23302 1.00175 0.97664 0.96885 1.22808 1.02079 0.95005 0.96644 1.23658 1.00894 0.96332 0.98348 0.92802 0.96635 0.97071 0.92902 0.92857 0.91757 0.91772 0.89058 0.89072 0.88138 0.90441 0.92429 0.87487 0.87660 0.92535 0.91473 0.89494 0.92018 0.89559 0.90783 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.14 -1.71 4.09 -27.88 -0.11 -1.82 16 13 C 0.52 6.73 7.35 -10.99 -0.08 6.65 16 14 O -0.52 -8.17 10.55 5.56 0.06 -8.11 16 15 N -0.60 -6.36 2.86 -157.68 -0.45 -6.81 16 16 C 0.07 0.57 6.57 -3.40 -0.02 0.55 16 17 C 0.05 0.34 6.92 37.30 0.26 0.59 16 18 O -0.38 -3.52 10.76 -35.23 -0.38 -3.90 16 19 C 0.07 0.59 6.20 37.07 0.23 0.82 16 20 C 0.11 1.12 1.23 -131.61 -0.16 0.96 16 21 C -0.14 -1.35 7.44 -26.17 -0.19 -1.55 16 22 C -0.13 -1.42 7.49 -25.81 -0.19 -1.61 16 23 C -0.16 -1.71 6.71 -26.18 -0.18 -1.88 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.09 0.97 7.89 -51.93 -0.41 0.56 16 32 H 0.09 0.98 7.83 -51.93 -0.41 0.57 16 33 H 0.10 0.64 6.14 -51.93 -0.32 0.32 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.73 7.95 -51.93 -0.41 0.32 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.69 7.97 -51.93 -0.41 0.28 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.17 6.63 -51.93 -0.34 0.83 16 43 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.13 1.74 5.02 -54.51 -0.27 1.47 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -33.12 339.10 -8.39 -41.51 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.58 Total: -2.57 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.26 Total: -15.28 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.32 Total: -34.37 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.32 Total: -12.01 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.12 -8.39 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588950913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.254 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds