Wall clock time and date at job start Tue Mar 31 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48502 * 109.47228 * 270.00143 * 3 2 1 5 5 H 1.48502 * 109.47025 * 30.00018 * 3 2 1 6 6 H 1.48498 * 109.47089 * 149.99717 * 3 2 1 7 7 C 1.37870 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99858 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46862 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46862 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47328 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99619 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99984 * 179.97438 * 13 12 11 16 16 C 1.47414 * 121.27961 * 353.63498 * 15 13 12 17 17 C 1.53285 * 108.23822 * 131.86664 * 16 15 13 18 18 O 1.42918 * 109.58908 * 54.14055 * 17 16 15 19 19 C 1.43191 * 114.15356 * 295.74900 * 18 17 16 20 20 C 1.46701 * 121.27186 * 173.65485 * 15 13 12 21 21 C 1.53197 * 113.67781 * 95.36769 * 20 15 13 22 22 C 1.53885 * 86.90592 * 270.15451 * 21 20 15 23 23 C 1.53174 * 113.72195 * 357.06222 * 20 15 13 24 24 H 0.97000 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47413 * 59.99489 * 9 7 2 26 26 H 1.08998 * 109.46580 * 299.99584 * 9 7 2 27 27 H 1.09005 * 109.46990 * 59.99897 * 10 9 7 28 28 H 1.09000 * 109.47058 * 299.99991 * 10 9 7 29 29 H 1.09005 * 109.46996 * 60.00398 * 11 10 9 30 30 H 1.09000 * 109.47682 * 300.00106 * 11 10 9 31 31 H 1.08996 * 109.47018 * 60.00134 * 12 11 10 32 32 H 1.08998 * 109.47313 * 300.00021 * 12 11 10 33 33 H 1.09001 * 109.70941 * 12.18444 * 16 15 13 34 34 H 1.08997 * 109.74843 * 251.57916 * 16 15 13 35 35 H 1.08991 * 109.45476 * 294.09992 * 17 16 15 36 36 H 1.08999 * 109.42944 * 174.15993 * 17 16 15 37 37 H 1.08993 * 109.57335 * 179.67486 * 19 18 17 38 38 H 1.08995 * 109.56878 * 300.03981 * 19 18 17 39 39 H 1.08997 * 113.64279 * 24.66285 * 21 20 15 40 40 H 1.09004 * 113.63866 * 155.65531 * 21 20 15 41 41 H 1.09007 * 113.60301 * 220.42746 * 22 21 20 42 42 H 1.09003 * 113.59890 * 89.57893 * 22 21 20 43 43 H 1.09001 * 113.64686 * 204.31272 * 23 20 15 44 44 H 1.09003 * 113.64207 * 335.21122 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6364 -0.0001 12 6 6.0615 -4.0790 0.0004 13 6 7.5686 -4.0790 0.0010 14 8 8.1749 -3.0286 0.0014 15 7 8.2424 -5.2461 0.0020 16 6 7.5407 -6.5349 0.1423 17 6 8.0581 -7.4837 -0.9448 18 8 9.4830 -7.5661 -0.8705 19 6 10.1564 -6.3334 -1.1486 20 6 9.7025 -5.2827 -0.1360 21 6 10.4454 -5.3509 1.2021 22 6 10.4450 -3.8121 1.1856 23 6 10.3362 -3.9042 -0.3466 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6807 0.8904 26 1 3.8751 -0.6796 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8897 29 1 5.9148 -2.1227 0.8900 30 1 5.9149 -2.1225 -0.8900 31 1 5.6982 -4.5931 -0.8894 32 1 5.6983 -4.5925 0.8905 33 1 6.4681 -6.3848 0.0191 34 1 7.7419 -6.9586 1.1262 35 1 7.7670 -7.1059 -1.9249 36 1 7.6290 -8.4745 -0.7956 37 1 11.2334 -6.4790 -1.0659 38 1 9.9076 -6.0008 -2.1563 39 1 9.8524 -5.7796 2.0099 40 1 11.4409 -5.7885 1.1274 41 1 11.3804 -3.3717 1.5311 42 1 9.5682 -3.3709 1.6596 43 1 11.3013 -3.9393 -0.8521 44 1 9.6561 -3.1724 -0.7827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588950913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:48 Heat of formation + Delta-G solvation = -74.683717 kcal Electronic energy + Delta-G solvation = -22739.076794 eV Core-core repulsion = 19463.596966 eV Total energy + Delta-G solvation = -3275.479828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33990 -39.49691 -38.16902 -36.60153 -35.58504 -34.54309 -31.81766 -30.92158 -28.79260 -27.57709 -26.73170 -24.83686 -24.03543 -22.77403 -21.85023 -21.20394 -19.34850 -18.85490 -18.22649 -17.44990 -17.00102 -16.74871 -16.37908 -16.32903 -16.09218 -15.72752 -15.56678 -14.84545 -14.71965 -14.54256 -14.23288 -13.81815 -13.72582 -13.50640 -13.24379 -12.88183 -12.82961 -12.58561 -12.33718 -12.14436 -12.01664 -11.87505 -11.75204 -11.60161 -11.46378 -11.35572 -11.32406 -11.24655 -11.05498 -10.76754 -9.99907 -9.48260 -8.30420 -6.33536 1.34129 1.35748 1.48391 1.56269 1.78301 2.35215 2.79615 3.05097 3.39212 3.57989 3.66055 3.80628 3.89261 3.96887 4.00449 4.11052 4.16997 4.24490 4.37096 4.44777 4.56799 4.61215 4.61707 4.72308 4.76301 4.79638 4.80894 4.86516 4.90892 4.99011 5.12285 5.17387 5.19031 5.22655 5.27183 5.38310 5.58785 5.64539 5.67950 5.77788 6.09042 6.28661 6.34480 6.74551 7.18435 7.31455 8.86238 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.003305 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.753807 B = 8471.057121 C = 9128.453675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.016 4.016 10 C -0.093 4.093 11 C -0.094 4.094 12 C -0.132 4.132 13 C 0.514 3.486 14 O -0.554 6.554 15 N -0.600 5.600 16 C 0.068 3.932 17 C 0.045 3.955 18 O -0.391 6.391 19 C 0.072 3.928 20 C 0.108 3.892 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.156 4.156 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.925 -17.385 -0.913 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.171 4.171 13 C 0.304 3.696 14 O -0.433 6.433 15 N -0.334 5.334 16 C -0.054 4.054 17 C -0.032 4.032 18 O -0.309 6.309 19 C -0.005 4.005 20 C 0.022 3.978 21 C -0.169 4.169 22 C -0.170 4.170 23 C -0.193 4.193 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 24.175 -16.905 -0.865 29.512 hybrid contribution -0.514 1.234 0.061 1.338 sum 23.661 -15.671 -0.804 28.391 Atomic orbital electron populations 1.70059 1.08130 1.28097 1.52885 1.25988 0.95607 1.03387 0.94283 0.85698 0.79367 0.78645 0.79197 1.19172 1.20737 1.17652 1.21549 0.92133 0.93214 1.49973 0.94456 1.19567 0.93872 0.95871 0.96053 1.21334 0.93743 0.96728 1.01291 1.21257 0.94749 0.95427 1.01776 1.21737 0.90078 0.99277 1.06013 1.21139 0.90876 0.82711 0.74829 1.90531 1.69588 1.32915 1.50313 1.47851 1.06166 1.06665 1.72675 1.22761 0.99016 0.82571 1.01034 1.23116 0.80856 1.01646 0.97620 1.87978 1.19314 1.32136 1.91462 1.22941 0.98634 0.82816 0.96125 1.21983 0.80425 0.97823 0.97554 1.23269 1.01142 0.96154 0.96308 1.22739 1.01129 0.96395 0.96726 1.23586 1.01361 0.96358 0.98042 0.92502 0.96880 0.96896 0.92440 0.92548 0.93063 0.92824 0.86869 0.87070 0.86540 0.89778 0.92395 0.85110 0.85815 0.92649 0.92027 0.87332 0.91146 0.92556 0.88768 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.44 0.30 -60.22 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.66 6.54 99.48 0.65 -11.00 16 7 C -0.53 -31.20 9.66 25.60 0.25 -30.96 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.34 16 9 C -0.02 -0.78 4.04 29.85 0.12 -0.66 16 10 C -0.09 -3.54 5.15 30.59 0.16 -3.38 16 11 C -0.09 -2.98 4.50 30.59 0.14 -2.84 16 12 C -0.13 -2.99 4.09 29.85 0.12 -2.87 16 13 C 0.51 12.85 7.35 87.66 0.64 13.50 16 14 O -0.55 -17.66 10.55 -3.03 -0.03 -17.69 16 15 N -0.60 -11.67 2.86 -771.18 -2.21 -13.87 16 16 C 0.07 0.87 6.57 86.30 0.57 1.44 16 17 C 0.04 0.51 6.92 72.08 0.50 1.01 16 18 O -0.39 -6.15 10.76 -148.98 -1.60 -7.75 16 19 C 0.07 1.06 6.20 71.93 0.45 1.51 16 20 C 0.11 1.98 1.23 3.63 0.00 1.98 16 21 C -0.13 -2.24 7.44 30.96 0.23 -2.01 16 22 C -0.13 -2.87 7.49 31.19 0.23 -2.64 16 23 C -0.16 -3.31 6.71 30.95 0.21 -3.10 16 24 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 26 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 27 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.11 2.09 7.89 -2.39 -0.02 2.07 16 32 H 0.11 2.10 7.83 -2.39 -0.02 2.08 16 33 H 0.12 1.10 6.14 -2.39 -0.01 1.09 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.33 7.95 -2.39 -0.02 1.31 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.40 7.97 -2.38 -0.02 1.38 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.06 1.57 6.63 -2.39 -0.02 1.55 16 43 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 44 H 0.10 2.73 5.02 -43.23 -0.22 2.51 16 Total: -1.00 -72.98 339.10 3.12 -69.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.70 Total: 10.23 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.08 Total: -28.32 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.91 Total: -74.10 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.63 Total: -25.45 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -72.98 3.12 -69.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588950913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.820 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds