Wall clock time and date at job start Tue Mar 31 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48500 * 109.47346 * 269.99969 * 3 2 1 5 5 H 1.48502 * 109.46996 * 30.00289 * 3 2 1 6 6 H 1.48502 * 109.46958 * 149.99721 * 3 2 1 7 7 C 1.37873 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00503 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47500 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47009 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 C 1.52996 * 109.44404 * 181.23493 * 16 15 14 18 18 H 1.09000 * 110.80534 * 300.49798 * 17 16 15 19 19 C 1.54815 * 110.90888 * 176.86801 * 17 16 15 20 20 C 1.54099 * 104.18540 * 220.92384 * 19 17 16 21 21 O 1.43740 * 107.29982 * 357.96887 * 20 19 17 22 22 C 1.44423 * 106.99745 * 26.49015 * 21 20 19 23 23 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 24 24 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 25 25 H 0.97003 * 119.99721 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47024 * 59.99757 * 9 7 2 27 27 H 1.08997 * 109.47328 * 300.00207 * 9 7 2 28 28 H 1.09001 * 109.46917 * 60.00014 * 10 9 7 29 29 H 1.08997 * 109.47262 * 300.00569 * 10 9 7 30 30 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 31 31 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 32 32 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 33 33 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 34 34 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 35 35 H 1.08992 * 110.48827 * 339.59982 * 19 17 16 36 36 H 1.09003 * 110.48682 * 102.24810 * 19 17 16 37 37 H 1.08999 * 109.88236 * 117.39816 * 20 19 17 38 38 H 1.09003 * 109.87681 * 238.39440 * 20 19 17 39 39 H 1.09004 * 110.65179 * 201.48459 * 22 21 20 40 40 H 1.08999 * 110.60308 * 78.46588 * 22 21 20 41 41 H 1.09002 * 109.49876 * 178.74890 * 23 16 15 42 42 H 1.09005 * 109.52615 * 58.67140 * 23 16 15 43 43 H 1.08998 * 109.58787 * 246.16207 * 24 13 11 44 44 H 1.09007 * 109.58600 * 6.44520 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 6 1.4916 -4.9672 -0.0045 12 8 0.2788 -4.9672 -0.0045 13 7 2.1654 -6.1345 -0.0052 14 6 1.4448 -7.4148 -0.0064 15 6 1.9514 -8.2703 1.1592 16 6 3.4736 -8.4022 1.0655 17 6 3.9800 -9.2815 2.2106 18 1 3.7160 -8.8499 3.1760 19 6 5.5086 -9.5021 2.1034 20 6 5.7021 -10.9872 2.4664 21 8 4.4076 -11.5195 2.7936 22 6 3.4328 -10.7261 2.0823 23 6 4.1174 -7.0173 1.1631 24 6 3.6346 -6.1507 -0.0036 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5576 0.8879 28 1 2.8718 -3.6052 0.8873 29 1 2.8719 -3.6036 -0.8926 30 1 0.3765 -7.2330 0.1111 31 1 1.6256 -7.9350 -0.9470 32 1 1.6870 -7.7929 2.1027 33 1 1.4947 -9.2588 1.1104 34 1 3.7385 -8.8594 0.1121 35 1 5.8513 -9.3101 1.0867 36 1 6.0367 -8.8641 2.8120 37 1 6.1199 -11.5254 1.6156 38 1 6.3691 -11.0752 3.3241 39 1 2.4529 -10.8085 2.5527 40 1 3.3839 -11.0263 1.0356 41 1 5.2020 -7.1162 1.1185 42 1 3.8333 -6.5490 2.1056 43 1 3.9965 -6.5686 -0.9429 44 1 4.0111 -5.1344 0.1133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589714069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:10 Heat of formation + Delta-G solvation = -107.061881 kcal Electronic energy + Delta-G solvation = -22371.837398 eV Core-core repulsion = 19094.953548 eV Total energy + Delta-G solvation = -3276.883850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38411 -39.37541 -37.25710 -34.11735 -33.52039 -31.84472 -30.82158 -30.63404 -29.14619 -26.03478 -24.86908 -23.68529 -22.34956 -21.94979 -20.85515 -20.25826 -18.55628 -17.12439 -16.73742 -16.23370 -15.69532 -15.54241 -15.39987 -15.18199 -14.43669 -14.22358 -14.11197 -13.78907 -13.50141 -13.38663 -13.03456 -12.50442 -12.43379 -12.13178 -12.06222 -11.90470 -11.56228 -11.34768 -11.26769 -11.12891 -10.93404 -10.84726 -10.60984 -10.53386 -10.46251 -9.99899 -9.95893 -9.59998 -9.16952 -8.97710 -8.41660 -8.30841 -5.96068 -4.00549 3.22010 3.29834 3.32964 3.39267 3.41786 3.60386 4.12268 4.30432 4.46488 4.47895 4.62529 4.70177 4.82455 4.92474 5.02357 5.03223 5.18148 5.21863 5.31542 5.38417 5.38820 5.41211 5.44835 5.49648 5.54520 5.60427 5.73705 5.73836 5.79341 5.85582 5.92910 6.02726 6.20120 6.21340 6.23535 6.52778 6.75552 6.91637 7.74250 7.76864 7.86568 8.07422 8.38574 8.75785 9.07994 9.62948 11.14931 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.003031 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.402874 B = 9234.589005 C = 9791.949554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.625 5.625 14 C 0.110 3.890 15 C -0.130 4.130 16 C -0.075 4.075 17 C -0.116 4.116 18 H 0.086 0.914 19 C -0.152 4.152 20 C 0.046 3.954 21 O -0.382 6.382 22 C 0.051 3.949 23 C -0.130 4.130 24 C 0.109 3.891 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -21.867 2.665 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.410 6.410 13 N -0.361 5.361 14 C -0.012 4.012 15 C -0.168 4.168 16 C -0.094 4.094 17 C -0.134 4.134 18 H 0.105 0.895 19 C -0.190 4.190 20 C -0.031 4.031 21 O -0.301 6.301 22 C -0.026 4.026 23 C -0.168 4.168 24 C -0.015 4.015 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.300 -21.904 2.802 24.806 hybrid contribution 0.652 1.049 -0.146 1.244 sum 11.952 -20.855 2.656 24.183 Atomic orbital electron populations 1.70003 1.06061 1.26574 1.50197 1.25028 0.94827 0.99228 0.95322 0.86592 0.79768 0.83527 0.78063 1.20673 1.21221 1.19885 1.21217 0.92892 0.91021 1.51374 0.92641 1.18905 0.93184 0.89389 0.98586 1.21873 1.00707 0.92036 1.02183 1.21580 0.88406 0.85515 0.74212 1.90652 1.14443 1.87168 1.48749 1.48290 1.06405 1.05851 1.75578 1.21449 0.98500 0.84017 0.97279 1.22004 0.94949 1.00076 0.99794 1.21125 0.95340 0.95227 0.97678 1.22798 0.94579 0.95886 1.00175 0.89531 1.23016 0.96502 0.96566 1.02874 1.23152 0.86306 0.93132 1.00516 1.88874 1.15624 1.56005 1.69576 1.23664 0.93121 0.88914 0.96886 1.21986 1.00223 0.94987 0.99644 1.21667 0.80228 1.01677 0.97887 0.92949 0.95866 0.95860 0.90334 0.90346 0.89065 0.92250 0.91281 0.90977 0.90821 0.90352 0.90370 0.92555 0.90045 0.88926 0.92050 0.90728 0.91166 0.91871 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.62 3.99 -27.88 -0.11 -2.73 16 11 C 0.51 10.07 7.70 -10.98 -0.08 9.99 16 12 O -0.53 -12.79 15.39 5.56 0.09 -12.71 16 13 N -0.62 -9.07 2.98 -172.80 -0.51 -9.59 16 14 C 0.11 1.37 6.43 -3.71 -0.02 1.34 16 15 C -0.13 -1.23 5.21 -26.59 -0.14 -1.36 16 16 C -0.08 -0.59 1.55 -90.57 -0.14 -0.73 16 17 C -0.12 -0.86 2.65 -88.61 -0.24 -1.09 16 18 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.15 -0.98 5.64 -25.20 -0.14 -1.12 16 20 C 0.05 0.33 7.70 37.73 0.29 0.62 16 21 O -0.38 -3.79 11.52 -35.23 -0.41 -4.20 16 22 C 0.05 0.40 6.25 38.22 0.24 0.64 16 23 C -0.13 -1.13 5.20 -26.64 -0.14 -1.27 16 24 C 0.11 1.18 6.34 -3.74 -0.02 1.15 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 29 H 0.08 1.47 7.94 -51.93 -0.41 1.05 16 30 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 7.68 -51.93 -0.40 0.05 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 40 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 41 H 0.07 0.52 7.22 -51.93 -0.37 0.14 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.03 5.93 -51.92 -0.31 0.73 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -34.25 343.89 -8.63 -42.89 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -7.66 Total: -4.02 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.04 Total: -7.39 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.22 Total: -36.40 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.32 Total: -16.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.25 -8.63 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589714069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.177 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds