Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48505 * 109.47093 * 269.99779 * 3 2 1 5 5 H 1.48502 * 109.46822 * 29.99443 * 3 2 1 6 6 H 1.48497 * 109.47403 * 149.99517 * 3 2 1 7 7 C 1.37884 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46686 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46686 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00187 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99583 * 179.97438 * 11 10 9 14 14 C 1.46934 * 120.62967 * 180.02562 * 13 11 10 15 15 C 1.53194 * 108.77475 * 233.63319 * 14 13 11 16 16 C 1.53044 * 109.31382 * 305.36499 * 15 14 13 17 17 C 1.53001 * 109.45908 * 181.38677 * 16 15 14 18 18 H 1.08993 * 110.75064 * 296.50155 * 17 16 15 19 19 C 1.55304 * 110.84593 * 59.97302 * 17 16 15 20 20 C 1.54944 * 100.97800 * 152.30096 * 19 17 16 21 21 O 1.43693 * 105.11450 * 323.61333 * 20 19 17 22 22 C 1.43240 * 109.99409 * 24.36003 * 21 20 19 23 23 C 1.53036 * 109.52653 * 61.37194 * 16 15 14 24 24 C 1.46929 * 120.63166 * 0.02836 * 13 11 10 25 25 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47238 * 60.00409 * 9 7 2 27 27 H 1.08999 * 109.47196 * 299.99808 * 9 7 2 28 28 H 1.09001 * 109.46789 * 60.00329 * 10 9 7 29 29 H 1.08996 * 109.47409 * 300.00444 * 10 9 7 30 30 H 1.08996 * 109.58462 * 113.84326 * 14 13 11 31 31 H 1.08997 * 109.69883 * 353.48995 * 14 13 11 32 32 H 1.09002 * 109.49475 * 185.41443 * 15 14 13 33 33 H 1.09000 * 109.52442 * 65.33209 * 15 14 13 34 34 H 1.09004 * 109.45937 * 301.35918 * 16 15 14 35 35 H 1.09002 * 111.12488 * 270.24072 * 19 17 16 36 36 H 1.08995 * 111.12730 * 34.36067 * 19 17 16 37 37 H 1.08996 * 110.31114 * 82.48962 * 20 19 17 38 38 H 1.09004 * 110.31323 * 204.65778 * 20 19 17 39 39 H 1.09001 * 109.83319 * 238.81565 * 22 21 20 40 40 H 1.08998 * 109.90329 * 117.88243 * 22 21 20 41 41 H 1.09000 * 109.50067 * 58.58186 * 23 16 15 42 42 H 1.09004 * 109.49914 * 178.68060 * 23 16 15 43 43 H 1.09001 * 109.58487 * 246.15411 * 24 13 11 44 44 H 1.08996 * 109.58717 * 6.43610 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4916 -4.9672 0.0020 12 8 0.2788 -4.9671 0.0020 13 7 2.1655 -6.1344 0.0014 14 6 1.4449 -7.4149 0.0013 15 6 1.9531 -8.2667 1.1688 16 6 3.4745 -8.4017 1.0722 17 6 3.9819 -9.2806 2.2172 18 1 3.7826 -8.8123 3.1810 19 6 3.3483 -10.6969 2.1493 20 6 4.4503 -11.5461 2.8312 21 8 5.6915 -10.9573 2.4099 22 6 5.4859 -9.5861 2.0502 23 6 4.1180 -7.0166 1.1689 24 6 3.6347 -6.1506 0.0008 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8920 28 1 2.8725 -3.6040 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 1.6270 -7.9366 -0.9382 31 1 0.3762 -7.2350 0.1182 32 1 1.4965 -9.2554 1.1234 33 1 1.6895 -7.7871 2.1114 34 1 3.7387 -8.8591 0.1187 35 1 2.4160 -10.7376 2.7127 36 1 3.1942 -11.0092 1.1165 37 1 4.3544 -11.4904 3.9155 38 1 4.3900 -12.5823 2.4981 39 1 5.7827 -9.4273 1.0135 40 1 6.0696 -8.9392 2.7051 41 1 3.8339 -6.5483 2.1113 42 1 5.2027 -7.1153 1.1237 43 1 3.9951 -6.5694 -0.9388 44 1 4.0114 -5.1343 0.1160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589714070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -107.090837 kcal Electronic energy + Delta-G solvation = -22372.488376 eV Core-core repulsion = 19095.603271 eV Total energy + Delta-G solvation = -3276.885106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39775 -39.38104 -37.26039 -34.14210 -33.51600 -31.67385 -31.22861 -30.41319 -29.18352 -26.12548 -24.73038 -23.72918 -22.30581 -21.87280 -20.97850 -20.27729 -18.56437 -17.15999 -16.77760 -16.35458 -15.75956 -15.41378 -15.23726 -15.14937 -14.44835 -14.24893 -14.08863 -13.76384 -13.59465 -13.39841 -13.02881 -12.55718 -12.41063 -12.14022 -12.07229 -11.90331 -11.57863 -11.36895 -11.29938 -11.13483 -10.94198 -10.91030 -10.61598 -10.55226 -10.44598 -9.95854 -9.83916 -9.60019 -9.16959 -8.97769 -8.41871 -8.30832 -5.96040 -4.00459 3.21959 3.29617 3.33134 3.39432 3.42021 3.55541 4.03946 4.24703 4.46275 4.48469 4.62792 4.79015 4.81942 4.88953 5.02103 5.02706 5.14730 5.21548 5.31882 5.35824 5.38874 5.42251 5.47384 5.49771 5.54808 5.59109 5.73262 5.73929 5.78444 5.85641 5.92101 6.02389 6.19682 6.21415 6.23248 6.66079 6.75326 6.91643 7.74351 7.76741 7.86555 8.07408 8.38653 8.75618 9.08096 9.63023 11.14966 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033989 B = 0.003031 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.599912 B = 9236.091495 C = 9788.575182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.625 5.625 14 C 0.110 3.890 15 C -0.127 4.127 16 C -0.075 4.075 17 C -0.117 4.117 18 H 0.086 0.914 19 C -0.152 4.152 20 C 0.050 3.950 21 O -0.388 6.388 22 C 0.055 3.945 23 C -0.133 4.133 24 C 0.109 3.891 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -22.623 3.632 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.012 4.012 15 C -0.166 4.166 16 C -0.093 4.093 17 C -0.136 4.136 18 H 0.104 0.896 19 C -0.189 4.189 20 C -0.027 4.027 21 O -0.308 6.308 22 C -0.021 4.021 23 C -0.171 4.171 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.516 -22.581 3.623 24.770 hybrid contribution 0.316 0.984 0.055 1.035 sum 9.832 -21.597 3.679 24.013 Atomic orbital electron populations 1.69998 1.06067 1.26578 1.50204 1.25030 0.94823 0.99230 0.95317 0.86594 0.79774 0.83522 0.78072 1.20666 1.21224 1.19878 1.21219 0.92899 0.91015 1.51370 0.92629 1.18905 0.93181 0.89395 0.98573 1.21877 1.00709 0.92025 1.02202 1.21584 0.88405 0.85522 0.74202 1.90653 1.14445 1.87178 1.48775 1.48295 1.06417 1.05846 1.75571 1.21456 0.98475 0.84021 0.97296 1.21977 0.94869 1.00068 0.99663 1.21129 0.95481 0.95039 0.97683 1.22795 0.94633 0.95858 1.00264 0.89582 1.23334 0.99054 0.94418 1.02127 1.23380 0.83120 0.97601 0.98550 1.88403 1.31122 1.24556 1.86678 1.23226 0.95459 0.82897 1.00564 1.22034 1.00241 0.95092 0.99735 1.21682 0.80189 1.01692 0.97868 0.92949 0.95867 0.95876 0.90326 0.90324 0.92253 0.89087 0.90965 0.91393 0.90684 0.89817 0.90160 0.92278 0.89876 0.91049 0.91419 0.91094 0.90734 0.91793 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.63 3.98 -27.88 -0.11 -2.74 16 11 C 0.51 10.07 7.70 -10.99 -0.08 9.99 16 12 O -0.54 -12.79 15.40 5.56 0.09 -12.71 16 13 N -0.63 -9.08 2.97 -172.73 -0.51 -9.59 16 14 C 0.11 1.37 6.43 -3.71 -0.02 1.34 16 15 C -0.13 -1.20 5.16 -26.61 -0.14 -1.33 16 16 C -0.07 -0.60 1.55 -90.58 -0.14 -0.74 16 17 C -0.12 -0.85 2.53 -88.67 -0.22 -1.08 16 18 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.15 -0.99 5.44 -24.48 -0.13 -1.12 16 20 C 0.05 0.36 7.78 38.18 0.30 0.66 16 21 O -0.39 -3.85 11.36 -35.23 -0.40 -4.25 16 22 C 0.05 0.44 6.57 37.88 0.25 0.69 16 23 C -0.13 -1.16 5.23 -26.59 -0.14 -1.30 16 24 C 0.11 1.19 6.35 -3.69 -0.02 1.17 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 29 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 32 H 0.07 0.56 7.23 -51.93 -0.38 0.18 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 35 H 0.08 0.48 8.13 -51.93 -0.42 0.05 16 36 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.53 7.49 -51.93 -0.39 0.14 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -34.24 344.09 -8.60 -42.84 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -7.67 Total: -4.04 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.00 Total: -7.28 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.22 Total: -36.41 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.31 Total: -16.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.24 -8.60 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589714070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.250 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds