Wall clock time and date at job start Tue Mar 31 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47325 * 269.99774 * 3 2 1 5 5 H 1.48502 * 109.47092 * 29.99922 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99516 * 3 2 1 7 7 C 1.37875 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.53072 * 109.44921 * 64.78953 * 10 9 7 12 12 C 1.53189 * 109.29158 * 181.24523 * 11 10 9 13 13 N 1.46928 * 108.89422 * 305.57863 * 12 11 10 14 14 C 1.34779 * 120.62641 * 233.51737 * 13 12 11 15 15 O 1.21288 * 119.99430 * 175.34454 * 14 13 12 16 16 C 1.50701 * 120.00523 * 355.34444 * 14 13 12 17 17 H 1.09002 * 109.46367 * 52.82051 * 16 14 13 18 18 O 1.42893 * 109.47172 * 172.81697 * 16 14 13 19 19 C 1.52996 * 109.47006 * 292.81989 * 16 14 13 20 20 C 1.53774 * 113.61476 * 279.56303 * 19 16 14 21 21 C 1.53782 * 87.08187 * 220.01802 * 20 19 16 22 22 C 1.53778 * 87.07959 * 25.43262 * 21 20 19 23 23 C 1.46924 * 118.74051 * 53.53606 * 13 12 11 24 24 C 1.53038 * 109.46000 * 185.00238 * 10 9 7 25 25 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47065 * 59.99495 * 9 7 2 27 27 H 1.08995 * 109.47093 * 300.00044 * 9 7 2 28 28 H 1.09000 * 109.44528 * 304.96367 * 10 9 7 29 29 H 1.08999 * 109.39382 * 61.37034 * 11 10 9 30 30 H 1.09004 * 109.62296 * 301.25506 * 11 10 9 31 31 H 1.09005 * 109.58970 * 185.71690 * 12 11 10 32 32 H 1.09002 * 109.59028 * 65.43571 * 12 11 10 33 33 H 0.96699 * 113.99874 * 59.99927 * 18 16 14 34 34 H 1.09005 * 112.85089 * 50.87346 * 19 16 14 35 35 H 1.08999 * 113.61634 * 334.56927 * 20 19 16 36 36 H 1.08998 * 113.61677 * 105.47055 * 20 19 16 37 37 H 1.08994 * 113.61398 * 270.88612 * 21 20 19 38 38 H 1.09006 * 113.61337 * 139.97862 * 21 20 19 39 39 H 1.08998 * 113.61480 * 220.01436 * 22 21 20 40 40 H 1.09003 * 113.69122 * 89.12423 * 22 21 20 41 41 H 1.08998 * 109.58431 * 66.17880 * 23 13 12 42 42 H 1.08995 * 109.58453 * 186.46799 * 23 13 12 43 43 H 1.09002 * 109.50484 * 58.65905 * 24 10 9 44 44 H 1.09000 * 109.52215 * 298.58027 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 3.0439 -3.6499 1.3064 12 6 4.0595 -4.7967 1.2893 13 7 3.3507 -6.0560 1.0239 14 6 3.4926 -7.1112 1.8503 15 8 2.8382 -8.1161 1.6686 16 6 4.4644 -7.0426 3.0001 17 1 4.2631 -6.1503 3.5930 18 8 4.3147 -8.2031 3.8202 19 6 5.8935 -6.9826 2.4571 20 6 6.4540 -8.3540 2.0451 21 6 7.7896 -7.9055 2.6615 22 6 6.9695 -6.9606 3.5555 23 6 2.4846 -6.1433 -0.1598 24 6 1.4842 -4.9837 -0.1253 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.9289 -3.5551 -0.8418 29 1 2.3634 -3.7792 2.1480 30 1 3.5695 -2.7001 1.4054 31 1 4.5602 -4.8559 2.2558 32 1 4.7968 -4.6203 0.5061 33 1 4.4791 -9.0359 3.3570 34 1 6.0266 -6.2096 1.7001 35 1 5.9905 -9.1903 2.5684 36 1 6.4987 -8.5011 0.9660 37 1 8.4418 -7.3859 1.9596 38 1 8.3022 -8.6934 3.2134 39 1 7.4303 -5.9829 3.6959 40 1 6.6463 -7.4146 4.4923 41 1 3.0917 -6.0754 -1.0625 42 1 1.9480 -7.0920 -0.1507 43 1 0.8991 -4.9805 -1.0449 44 1 0.8181 -5.1032 0.7292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592817799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:15 Heat of formation + Delta-G solvation = -85.461563 kcal Electronic energy + Delta-G solvation = -23027.325469 eV Core-core repulsion = 19751.378279 eV Total energy + Delta-G solvation = -3275.947190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79664 -38.94016 -37.41433 -35.67700 -34.08965 -32.27457 -31.07232 -29.17459 -27.84418 -25.95374 -24.93321 -23.68677 -22.92989 -21.71063 -20.02434 -19.58374 -18.95620 -17.53596 -17.04723 -16.44434 -16.28154 -15.43428 -15.28038 -14.57652 -14.24565 -14.09377 -13.77510 -13.54232 -13.27150 -13.08476 -12.78494 -12.69352 -12.28978 -12.24266 -11.97586 -11.78530 -11.42491 -11.22721 -11.04611 -10.89122 -10.80135 -10.73045 -10.69392 -10.48455 -10.40712 -10.15997 -9.73278 -9.37999 -9.26793 -9.00703 -8.42039 -8.37731 -6.02861 -4.05307 2.58926 3.04257 3.28487 3.35566 3.37085 4.08936 4.19113 4.32897 4.37526 4.42249 4.53377 4.66439 4.94373 5.04727 5.23135 5.31417 5.35113 5.39101 5.42366 5.46456 5.48653 5.50548 5.63259 5.64480 5.69940 5.70560 5.92289 5.94139 6.02001 6.18565 6.32469 6.33608 6.47568 6.62396 6.90968 6.94509 7.06518 7.29973 7.51782 7.63416 7.77857 7.96550 8.17733 8.38424 9.01202 9.58735 11.08383 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.003917 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.986606 B = 7146.678202 C = 7861.744768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.120 4.120 12 C 0.100 3.900 13 N -0.600 5.600 14 C 0.488 3.512 15 O -0.546 6.546 16 C 0.101 3.899 17 H 0.126 0.874 18 O -0.536 6.536 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.130 4.130 23 C 0.111 3.889 24 C -0.129 4.129 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.378 0.622 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -14.289 4.251 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.334 5.334 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.038 3.962 17 H 0.143 0.857 18 O -0.343 6.343 19 C -0.164 4.164 20 C -0.177 4.177 21 C -0.176 4.176 22 C -0.167 4.167 23 C -0.011 4.011 24 C -0.167 4.167 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.200 -14.275 4.615 19.983 hybrid contribution 0.436 0.825 -0.564 1.090 sum 13.636 -13.451 4.051 19.577 Atomic orbital electron populations 1.69962 1.06073 1.26581 1.50797 1.25024 0.94793 0.99197 0.95425 0.86644 0.79838 0.83730 0.78069 1.20739 1.21293 1.19897 1.21226 0.92895 0.90944 1.50503 0.92602 1.19125 0.93608 0.90996 0.97242 1.21190 0.97985 0.94692 0.96024 1.21927 0.97582 0.97055 0.99255 1.22051 0.95350 0.83798 1.01023 1.48193 1.46439 1.12750 1.26035 1.21478 0.83818 0.83257 0.83895 1.90669 1.47063 1.31735 1.72983 1.21718 0.92402 0.90970 0.91111 0.85702 1.86591 1.93082 1.16053 1.38539 1.23352 0.93219 0.99814 1.00008 1.22924 0.97026 0.96559 1.01183 1.22759 0.96142 0.99531 0.99202 1.22917 0.95831 1.00316 0.97624 1.21682 0.92677 1.00389 0.86393 1.22019 0.97644 0.94755 1.02320 0.93011 0.96593 0.96609 0.92352 0.92180 0.89511 0.90421 0.91332 0.77122 0.87552 0.89828 0.91246 0.90115 0.91303 0.91135 0.89110 0.91797 0.89727 0.91108 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.79 8.39 -34.44 -0.29 -14.08 16 8 H 0.06 1.42 7.05 -52.48 -0.37 1.05 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.51 2.10 -90.56 -0.19 -1.70 16 11 C -0.12 -1.99 5.19 -26.60 -0.14 -2.13 16 12 C 0.10 1.28 4.97 -3.71 -0.02 1.26 16 13 N -0.60 -8.44 2.97 -172.77 -0.51 -8.95 16 14 C 0.49 7.08 7.02 -10.98 -0.08 7.00 16 15 O -0.55 -9.69 15.73 -14.26 -0.22 -9.91 16 16 C 0.10 1.15 2.60 -27.88 -0.07 1.08 16 17 H 0.13 1.36 7.10 -51.93 -0.37 0.99 16 18 O -0.54 -6.47 12.23 -55.04 -0.67 -7.14 16 19 C -0.15 -1.30 3.01 -89.81 -0.27 -1.58 16 20 C -0.14 -1.16 7.40 -25.92 -0.19 -1.36 16 21 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 22 C -0.13 -1.01 7.53 -25.92 -0.20 -1.21 16 23 C 0.11 1.63 6.44 -3.71 -0.02 1.60 16 24 C -0.13 -2.16 5.36 -26.61 -0.14 -2.30 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 31 H 0.08 0.81 5.15 -51.93 -0.27 0.54 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.38 3.87 6.54 45.56 0.30 4.17 16 34 H 0.11 0.94 6.42 -51.93 -0.33 0.61 16 35 H 0.08 0.66 5.93 -51.93 -0.31 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -31.27 338.89 -9.31 -40.57 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.68 Total: 2.60 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.04 Total: -12.60 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.22 Total: -34.59 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.90 Total: -17.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.27 -9.31 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592817799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.887 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds