Wall clock time and date at job start Tue Mar 31 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48504 * 109.46863 * 274.99531 * 3 2 1 5 5 H 1.48491 * 109.47117 * 34.99237 * 3 2 1 6 6 H 1.48492 * 109.47381 * 154.99618 * 3 2 1 7 7 C 1.37878 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00455 * 185.05417 * 7 2 1 9 9 C 1.50702 * 119.99647 * 5.05934 * 7 2 1 10 10 O 1.42899 * 110.64213 * 61.54922 * 9 7 2 11 11 C 1.55152 * 110.71958 * 298.21260 * 9 7 2 12 12 C 1.55130 * 101.48617 * 205.96930 * 11 9 7 13 13 N 1.47427 * 104.72124 * 37.29438 * 12 11 9 14 14 C 1.34776 * 125.64788 * 155.82029 * 13 12 11 15 15 O 1.21282 * 119.99730 * 184.83558 * 14 13 12 16 16 C 1.50703 * 120.00212 * 4.83445 * 14 13 12 17 17 C 1.54072 * 108.87653 * 267.82173 * 16 14 13 18 18 C 1.54259 * 112.95009 * 197.39291 * 17 16 14 19 19 C 1.50480 * 112.38760 * 318.57833 * 18 17 16 20 20 C 1.54234 * 108.68307 * 93.93236 * 19 18 17 21 21 C 1.45547 * 112.40922 * 279.91733 * 20 19 18 22 22 C 1.50466 * 108.87709 * 144.84426 * 16 14 13 23 23 C 1.47019 * 108.70141 * 335.55492 * 13 12 11 24 24 H 0.96996 * 120.00351 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99685 * 298.00140 * 10 9 7 26 26 H 1.08999 * 111.00810 * 324.20465 * 11 9 7 27 27 H 1.09001 * 111.00700 * 88.02611 * 11 9 7 28 28 H 1.09006 * 110.49840 * 278.45603 * 12 11 9 29 29 H 1.09000 * 110.34498 * 156.05988 * 12 11 9 30 30 H 1.08997 * 108.76822 * 26.32826 * 16 14 13 31 31 H 1.09001 * 108.81201 * 318.36673 * 17 16 14 32 32 H 1.08998 * 108.81348 * 76.64165 * 17 16 14 33 33 H 1.08991 * 109.18449 * 197.65972 * 18 17 16 34 34 H 1.09001 * 108.68151 * 79.14873 * 18 17 16 35 35 H 1.09001 * 109.62425 * 334.12862 * 19 18 17 36 36 H 1.08993 * 109.62509 * 213.74492 * 19 18 17 37 37 H 1.08998 * 108.89559 * 40.66912 * 20 19 18 38 38 H 1.08998 * 108.89580 * 159.25787 * 20 19 18 39 39 H 1.09005 * 108.89596 * 182.69082 * 21 20 19 40 40 H 1.09004 * 108.88819 * 301.27825 * 21 20 19 41 41 H 1.09008 * 109.62753 * 95.21675 * 22 16 14 42 42 H 1.09001 * 109.63039 * 334.63753 * 22 16 14 43 43 H 1.08996 * 109.88314 * 120.70929 * 23 13 12 44 44 H 1.09004 * 109.88301 * 241.71237 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5954 1.4121 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0829 9 6 1.2555 -2.4966 -0.1140 10 8 0.5442 -2.5616 -1.3517 11 6 0.2920 -2.6833 1.0877 12 6 0.1779 -4.2289 1.1550 13 7 1.5279 -4.7191 0.8224 14 6 2.0418 -5.9115 1.1837 15 8 3.1977 -6.1760 0.9289 16 6 1.1801 -6.9162 1.9044 17 6 1.3488 -6.7192 3.4231 18 6 0.8672 -7.9330 4.2443 19 6 -0.4172 -8.5105 3.7139 20 6 -0.0782 -9.6593 2.7422 21 6 0.2987 -9.1763 1.4220 22 6 1.5672 -8.2995 1.4567 23 6 2.2185 -3.6944 0.0258 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1301 -1.8762 -1.4542 26 1 0.7259 -2.2801 2.0027 27 1 -0.6781 -2.2296 0.8849 28 1 -0.5472 -4.5903 0.4257 29 1 -0.1036 -4.5448 2.1596 30 1 0.1379 -6.7384 1.6394 31 1 2.4025 -6.5435 3.6399 32 1 0.7783 -5.8424 3.7294 33 1 0.7156 -7.6277 5.2795 34 1 1.6385 -8.7026 4.2149 35 1 -0.9758 -7.7375 3.1863 36 1 -1.0148 -8.8944 4.5406 37 1 0.7475 -10.2388 3.1550 38 1 -0.9492 -10.3072 2.6441 39 1 0.4787 -10.0319 0.7711 40 1 -0.5235 -8.5890 1.0131 41 1 2.2863 -8.7235 2.1578 42 1 2.0071 -8.2524 0.4605 43 1 3.1294 -3.3802 0.5354 44 1 2.4635 -4.0929 -0.9587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:41 Heat of formation + Delta-G solvation = -109.635228 kcal Electronic energy + Delta-G solvation = -23406.821190 eV Core-core repulsion = 20129.825751 eV Total energy + Delta-G solvation = -3276.995439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11571 -38.32433 -37.02936 -34.31878 -32.59667 -32.25031 -32.16060 -29.61366 -28.34636 -25.79526 -24.97292 -24.37521 -22.34628 -20.64765 -20.25812 -19.40211 -18.36817 -17.26190 -16.75303 -15.74322 -15.52289 -14.97657 -14.63321 -14.51186 -14.32989 -14.12953 -13.87300 -13.22527 -13.04270 -13.00321 -12.30969 -12.24514 -12.14151 -12.06259 -11.55226 -11.38130 -11.32840 -11.18678 -10.92945 -10.79934 -10.67251 -10.59430 -10.48967 -10.46709 -10.41543 -10.33141 -10.12174 -9.40788 -9.15958 -8.71344 -8.22918 -7.97536 -6.29452 -4.37009 3.08416 3.19629 3.27414 3.31189 3.57102 4.26499 4.49128 4.60372 4.73733 4.96145 5.03298 5.08096 5.10778 5.17985 5.27735 5.36005 5.54777 5.58927 5.67064 5.74201 5.85059 5.89055 5.92611 5.94334 6.00388 6.05088 6.08704 6.12607 6.19292 6.24717 6.27565 6.34914 6.42593 6.45445 6.71700 6.91994 6.98706 7.29461 7.35866 7.72116 8.01702 8.15805 8.64543 8.68901 9.27495 9.35114 10.77394 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.004061 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.148378 B = 6892.805718 C = 6991.693754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.584 6.584 11 C -0.131 4.131 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.523 3.477 15 O -0.557 6.557 16 C -0.097 4.097 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.100 4.100 23 C 0.122 3.878 24 H 0.267 0.733 25 H 0.380 0.620 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -13.791 6.951 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.170 4.170 12 C -0.029 4.029 13 N -0.340 5.340 14 C 0.311 3.689 15 O -0.436 6.436 16 C -0.118 4.118 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.137 4.137 23 C 0.000 4.000 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.226 -14.384 6.741 16.209 hybrid contribution -0.046 1.556 0.097 1.559 sum -3.272 -12.828 6.838 14.900 Atomic orbital electron populations 1.69758 1.05916 1.27539 1.50167 1.24976 0.95015 0.99488 0.93460 0.86422 0.79957 0.82529 0.78215 1.20417 1.21075 1.19697 1.21529 0.94055 0.90378 1.51399 0.91780 1.19461 0.87694 0.90834 0.81420 1.86151 1.55583 1.57644 1.39887 1.23321 1.02735 0.89805 1.01120 1.22576 0.83669 0.97838 0.98802 1.48707 1.16528 1.16135 1.52672 1.20369 0.87721 0.81410 0.79365 1.90644 1.17913 1.77973 1.57070 1.21099 1.00063 0.94756 0.95902 1.21843 1.02095 0.98435 0.91944 1.21338 0.97491 0.97596 0.98747 1.21367 0.97487 0.98108 0.98787 1.20496 1.01032 0.97907 0.95971 1.20513 0.97888 0.99799 0.97485 1.21214 0.97311 0.92892 1.02331 1.22049 0.96011 0.87711 0.94208 0.92296 0.77076 0.91441 0.89278 0.92084 0.92188 0.89624 0.91569 0.91684 0.92057 0.91970 0.91466 0.92065 0.92205 0.92515 0.92143 0.92067 0.91071 0.91099 0.91092 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.73 10.70 55.43 0.59 -22.14 16 2 C 0.07 1.87 5.27 -17.82 -0.09 1.78 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.02 8.21 -34.44 -0.28 -14.30 16 8 H 0.06 1.70 7.58 -52.49 -0.40 1.30 16 9 C 0.25 5.91 0.84 -89.94 -0.08 5.84 16 10 O -0.58 -14.49 13.08 -35.23 -0.46 -14.95 16 11 C -0.13 -2.81 5.42 -24.47 -0.13 -2.94 16 12 C 0.09 1.69 6.16 -2.41 -0.01 1.68 16 13 N -0.61 -12.15 3.32 -170.38 -0.57 -12.71 16 14 C 0.52 9.89 6.52 -10.98 -0.07 9.82 16 15 O -0.56 -12.34 16.50 5.56 0.09 -12.25 16 16 C -0.10 -1.36 1.44 -92.48 -0.13 -1.49 16 17 C -0.11 -1.30 5.21 -25.51 -0.13 -1.44 16 18 C -0.11 -1.11 5.34 -27.33 -0.15 -1.26 16 19 C -0.12 -1.07 5.59 -27.34 -0.15 -1.22 16 20 C -0.12 -1.02 5.26 -29.60 -0.16 -1.18 16 21 C -0.12 -1.21 5.26 -29.60 -0.16 -1.36 16 22 C -0.10 -1.28 4.76 -27.35 -0.13 -1.41 16 23 C 0.12 2.79 6.22 -3.07 -0.02 2.77 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.38 9.33 7.65 45.56 0.35 9.68 16 26 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 27 H 0.09 1.97 7.46 -51.93 -0.39 1.59 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 30 H 0.09 1.13 5.63 -51.93 -0.29 0.83 16 31 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 32 H 0.06 0.79 7.46 -51.93 -0.39 0.41 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 6.65 -51.93 -0.35 0.25 16 35 H 0.07 0.64 6.98 -51.93 -0.36 0.27 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 7.48 -51.93 -0.39 0.12 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 41 H 0.07 0.89 6.99 -51.92 -0.36 0.53 16 42 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16 43 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 44 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -28.00 332.49 -8.66 -36.66 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.61 Total: 9.88 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.70 Total: -4.71 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.03 Total: -34.85 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.37 Total: -27.20 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.00 -8.66 -36.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.975 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds