Wall clock time and date at job start Tue Mar 31 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00272 * 2 1 4 4 H 1.48496 * 109.47338 * 274.97150 * 3 2 1 5 5 H 1.48502 * 109.47043 * 34.97058 * 3 2 1 6 6 H 1.48500 * 109.47001 * 154.96481 * 3 2 1 7 7 C 1.37874 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00018 * 185.78724 * 7 2 1 9 9 C 1.50700 * 120.00142 * 5.78767 * 7 2 1 10 10 O 1.42905 * 110.63948 * 295.08188 * 9 7 2 11 11 C 1.55150 * 110.72273 * 58.22382 * 9 7 2 12 12 C 1.55389 * 101.36769 * 153.94325 * 11 9 7 13 13 N 1.47419 * 104.87510 * 323.02187 * 12 11 9 14 14 C 1.34780 * 125.64740 * 204.09406 * 13 12 11 15 15 O 1.21276 * 119.99941 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99911 * 0.03926 * 14 13 12 17 17 C 1.54237 * 108.89710 * 301.39417 * 16 14 13 18 18 C 1.50549 * 108.48412 * 159.17699 * 17 16 14 19 19 C 1.54065 * 112.41664 * 94.26934 * 18 17 16 20 20 C 1.54067 * 112.81405 * 318.28262 * 19 18 17 21 21 C 1.50478 * 112.49574 * 318.27989 * 20 19 18 22 22 C 1.45542 * 108.89305 * 178.60166 * 16 14 13 23 23 C 1.47017 * 108.70458 * 24.12762 * 13 12 11 24 24 H 0.97003 * 119.99264 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99774 * 59.29974 * 10 9 7 26 26 H 1.09002 * 111.00603 * 272.11773 * 11 9 7 27 27 H 1.09008 * 111.00414 * 35.96654 * 11 9 7 28 28 H 1.08998 * 110.34387 * 204.16100 * 12 11 9 29 29 H 1.09006 * 110.43904 * 81.92202 * 12 11 9 30 30 H 1.09000 * 108.87070 * 59.99827 * 16 14 13 31 31 H 1.08997 * 109.62681 * 278.97866 * 17 16 14 32 32 H 1.09006 * 109.62505 * 39.55602 * 17 16 14 33 33 H 1.09000 * 108.92815 * 333.51237 * 18 17 16 34 34 H 1.09008 * 108.83737 * 214.96679 * 18 17 16 35 35 H 1.08991 * 108.81891 * 197.41813 * 19 18 17 36 36 H 1.09004 * 108.81418 * 79.13820 * 19 18 17 37 37 H 1.09002 * 108.87767 * 197.50921 * 20 19 18 38 38 H 1.08996 * 108.87970 * 79.05704 * 20 19 18 39 39 H 1.09002 * 109.62344 * 334.44808 * 21 20 19 40 40 H 1.08993 * 109.79316 * 213.96113 * 21 20 19 41 41 H 1.08998 * 108.89778 * 303.44456 * 22 16 14 42 42 H 1.08999 * 108.89253 * 62.03879 * 22 16 14 43 43 H 1.09002 * 109.88497 * 239.52547 * 23 13 12 44 44 H 1.09001 * 109.88320 * 118.36101 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3917 2.1070 -1.3947 5 1 1.5032 2.6200 0.8025 6 1 3.5953 1.4120 0.5925 7 6 2.0045 -1.1941 -0.0005 8 1 3.0804 -1.1966 0.0938 9 6 1.2567 -2.4958 -0.1327 10 8 0.4113 -2.7082 0.9997 11 6 0.4319 -2.5241 -1.4465 12 6 0.3404 -4.0514 -1.7178 13 7 1.6466 -4.5895 -1.2965 14 6 2.2058 -5.7323 -1.7414 15 8 3.2899 -6.0798 -1.3232 16 6 1.4841 -6.5781 -2.7587 17 6 0.1138 -6.9907 -2.1835 18 6 -0.7891 -7.3703 -3.3269 19 6 -0.7744 -8.8848 -3.6092 20 6 0.6391 -9.4930 -3.5331 21 6 1.6784 -8.6167 -4.1782 22 6 2.3136 -7.7273 -3.0898 23 6 2.2379 -3.6736 -0.3102 24 1 -0.4849 0.8401 0.0004 25 1 -0.2489 -2.0144 1.1333 26 1 -0.5569 -2.0906 -1.2966 27 1 0.9619 -2.0150 -2.2517 28 1 0.1773 -4.2386 -2.7792 29 1 -0.4611 -4.4955 -1.1275 30 1 1.3249 -5.9863 -3.6601 31 1 0.2388 -7.8425 -1.5150 32 1 -0.3210 -6.1536 -1.6372 33 1 -0.4657 -6.8413 -4.2234 34 1 -1.8079 -7.0662 -3.0867 35 1 -1.1795 -9.0606 -4.6056 36 1 -1.4119 -9.3845 -2.8798 37 1 0.6339 -10.4611 -4.0340 38 1 0.9033 -9.6412 -2.4861 39 1 1.2091 -7.9892 -4.9359 40 1 2.4476 -9.2354 -4.6403 41 1 3.2819 -7.3736 -3.4436 42 1 2.4635 -8.3251 -2.1907 43 1 3.1970 -3.3054 -0.6745 44 1 2.3734 -4.1896 0.6403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:46 Heat of formation + Delta-G solvation = -105.437979 kcal Electronic energy + Delta-G solvation = -23494.375442 eV Core-core repulsion = 20217.562010 eV Total energy + Delta-G solvation = -3276.813433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29449 -38.20733 -37.01717 -34.38680 -32.53119 -32.24460 -32.14160 -29.60114 -28.31082 -25.81114 -24.99449 -24.30760 -22.45967 -20.88739 -19.71605 -19.34212 -18.75062 -17.26870 -16.57699 -15.85517 -15.35678 -15.18117 -14.92399 -14.54258 -14.23670 -13.95307 -13.52247 -13.36803 -13.07292 -12.90991 -12.35731 -12.18455 -12.14501 -12.04729 -11.55989 -11.48198 -11.37591 -11.06307 -10.88942 -10.80079 -10.67132 -10.61517 -10.54369 -10.48969 -10.39469 -10.18737 -10.09068 -9.40789 -9.16515 -8.66252 -8.23549 -7.98220 -6.31291 -4.38097 3.09087 3.18331 3.26464 3.30764 3.56481 4.25572 4.56927 4.63713 4.73964 4.95836 5.01459 5.05600 5.13420 5.20948 5.27948 5.36770 5.47239 5.64955 5.69325 5.72654 5.81199 5.90736 5.91919 5.94369 6.03181 6.08834 6.11629 6.13446 6.19243 6.25159 6.32538 6.41600 6.45667 6.47117 6.70763 6.90652 6.97754 7.28617 7.34856 7.71284 8.01056 8.15232 8.64013 8.68475 9.28068 9.39511 10.76330 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033388 B = 0.004165 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.425845 B = 6721.188897 C = 7070.772940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.587 6.587 11 C -0.135 4.135 12 C 0.096 3.904 13 N -0.607 5.607 14 C 0.521 3.479 15 O -0.557 6.557 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.104 4.104 23 C 0.122 3.878 24 H 0.268 0.732 25 H 0.383 0.617 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -12.750 -8.582 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.026 4.026 13 N -0.339 5.339 14 C 0.309 3.691 15 O -0.437 6.437 16 C -0.115 4.115 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.142 4.142 23 C 0.000 4.000 24 H 0.078 0.922 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.003 -13.415 -8.318 16.068 hybrid contribution 0.010 1.547 -0.127 1.553 sum -2.993 -11.868 -8.445 14.870 Atomic orbital electron populations 1.69705 1.05961 1.27626 1.50104 1.24979 0.95001 0.99495 0.93476 0.86416 0.80036 0.82524 0.78125 1.20496 1.21017 1.19650 1.21537 0.94166 0.90335 1.51435 0.91767 1.19477 0.86522 0.90449 0.82939 1.86129 1.51290 1.52372 1.49758 1.23376 1.02907 0.90574 1.00491 1.22646 0.84807 0.96975 0.98221 1.48631 1.20762 1.21862 1.42660 1.20396 0.85605 0.80324 0.82734 1.90645 1.21790 1.71372 1.59848 1.20199 0.96373 0.96974 0.97945 1.21564 0.93412 1.02412 0.98319 1.21333 0.99708 0.95836 0.98502 1.21913 0.96668 0.95596 1.01185 1.21363 0.94709 0.98404 1.01287 1.21310 0.97880 0.98129 0.97876 1.20313 0.98618 0.96054 0.99215 1.22056 0.97120 0.90033 0.90756 0.92226 0.76728 0.89362 0.91535 0.92132 0.91700 0.89241 0.91207 0.90140 0.91941 0.91952 0.92489 0.92432 0.92618 0.91969 0.91690 0.91889 0.91524 0.91406 0.91100 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.66 10.69 55.43 0.59 -22.07 16 2 C 0.07 1.86 5.23 -17.82 -0.09 1.77 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.99 8.21 -34.44 -0.28 -14.27 16 8 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 9 C 0.25 5.89 0.85 -89.94 -0.08 5.82 16 10 O -0.59 -14.57 13.08 -35.23 -0.46 -15.03 16 11 C -0.13 -2.86 5.47 -24.33 -0.13 -2.99 16 12 C 0.10 1.70 5.18 -2.27 -0.01 1.69 16 13 N -0.61 -11.96 3.29 -170.22 -0.56 -12.52 16 14 C 0.52 9.79 7.16 -10.98 -0.08 9.72 16 15 O -0.56 -12.31 16.11 5.56 0.09 -12.22 16 16 C -0.09 -1.30 1.42 -94.64 -0.13 -1.44 16 17 C -0.12 -1.47 4.69 -27.31 -0.13 -1.60 16 18 C -0.12 -1.15 5.32 -27.40 -0.15 -1.29 16 19 C -0.12 -1.02 5.85 -25.62 -0.15 -1.17 16 20 C -0.12 -1.11 5.31 -27.43 -0.15 -1.25 16 21 C -0.11 -1.13 5.61 -27.34 -0.15 -1.28 16 22 C -0.10 -1.34 3.84 -29.60 -0.11 -1.46 16 23 C 0.12 2.78 6.22 -3.07 -0.02 2.76 16 24 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 25 H 0.38 9.49 7.48 45.56 0.34 9.83 16 26 H 0.09 1.94 7.53 -51.93 -0.39 1.55 16 27 H 0.07 1.46 8.04 -51.92 -0.42 1.04 16 28 H 0.06 0.90 7.41 -51.93 -0.38 0.52 16 29 H 0.06 1.11 6.78 -51.93 -0.35 0.76 16 30 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16 31 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 32 H 0.08 1.09 4.65 -51.93 -0.24 0.84 16 33 H 0.06 0.60 6.63 -51.93 -0.34 0.25 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.62 6.62 -51.93 -0.34 0.28 16 39 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 42 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 43 H 0.07 1.65 7.68 -51.93 -0.40 1.25 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -27.82 328.26 -8.57 -36.38 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.49 Total: 10.43 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.66 Total: -5.01 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.03 Total: -34.59 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.37 Total: -27.26 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.82 -8.57 -36.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.056 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds