Wall clock time and date at job start Tue Mar 31 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99344 * 2 1 4 4 H 1.48503 * 109.46745 * 239.99945 * 3 2 1 5 5 H 1.48496 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47279 * 120.00103 * 3 2 1 7 7 C 1.37876 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99950 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.91774 * 62.44770 * 9 7 2 11 11 C 1.55157 * 111.00368 * 298.54392 * 9 7 2 12 12 C 1.54320 * 102.94056 * 206.42440 * 11 9 7 13 13 N 1.47012 * 107.27512 * 22.19542 * 12 11 9 14 14 C 1.34774 * 125.65295 * 181.02070 * 13 12 11 15 15 O 1.21284 * 120.00607 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99678 * 0.02620 * 14 13 12 17 17 C 1.53004 * 109.46759 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46634 * 180.02562 * 17 16 14 19 19 C 1.54894 * 110.75410 * 175.00220 * 18 17 16 20 20 C 1.54266 * 104.31305 * 156.31914 * 19 18 17 21 21 C 1.53869 * 106.60031 * 336.32486 * 20 19 18 22 22 C 1.54266 * 106.59800 * 359.97438 * 21 20 19 23 23 C 1.47427 * 108.70305 * 1.28352 * 13 12 11 24 24 H 0.96997 * 120.00503 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99758 * 297.55203 * 10 9 7 26 26 H 1.09004 * 110.71844 * 88.06065 * 11 9 7 27 27 H 1.08998 * 110.72041 * 324.78812 * 11 9 7 28 28 H 1.09004 * 109.88101 * 262.77177 * 12 11 9 29 29 H 1.09007 * 110.00941 * 141.68917 * 12 11 9 30 30 H 1.09002 * 109.47273 * 60.00034 * 16 14 13 31 31 H 1.08998 * 109.46964 * 299.99689 * 16 14 13 32 32 H 1.08993 * 109.47124 * 60.00217 * 17 16 14 33 33 H 1.08998 * 109.47152 * 299.99603 * 17 16 14 34 34 H 1.08993 * 110.82117 * 51.65872 * 18 17 16 35 35 H 1.09002 * 110.48891 * 37.57340 * 19 18 17 36 36 H 1.08998 * 110.48494 * 275.06427 * 19 18 17 37 37 H 1.09001 * 110.03084 * 95.60669 * 20 19 18 38 38 H 1.08995 * 110.03255 * 217.03136 * 20 19 18 39 39 H 1.08999 * 110.04012 * 119.28327 * 21 20 19 40 40 H 1.09003 * 110.03070 * 240.71854 * 21 20 19 41 41 H 1.09005 * 110.48526 * 142.29451 * 22 21 20 42 42 H 1.09007 * 110.48724 * 264.79935 * 22 21 20 43 43 H 1.09002 * 110.36748 * 94.48454 * 23 13 12 44 44 H 1.08997 * 110.36970 * 216.80783 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4619 -2.6326 -1.1832 11 6 0.3733 -2.6345 1.2726 12 6 0.2582 -4.1629 1.4521 13 7 1.3943 -4.7722 0.7455 14 6 1.6419 -6.0934 0.6487 15 8 2.6141 -6.4852 0.0384 16 6 0.7108 -7.0842 1.2988 17 6 1.2160 -8.5049 1.0393 18 6 0.2703 -9.5107 1.6988 19 6 0.6831 -10.9624 1.3502 20 6 0.0960 -11.8116 2.4964 21 6 -0.0726 -10.8684 3.7004 22 6 0.4185 -9.4791 3.2440 23 6 2.2214 -3.6983 0.1658 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2245 -1.9578 -1.2764 26 1 -0.6090 -2.1898 1.1124 27 1 0.8673 -2.1814 2.1321 28 1 -0.6789 -4.5170 1.0223 29 1 0.2999 -4.4183 2.5110 30 1 -0.2891 -6.9722 0.8795 31 1 0.6772 -6.9006 2.3727 32 1 2.2159 -8.6171 1.4583 33 1 1.2493 -8.6882 -0.0346 34 1 -0.7622 -9.3217 1.4054 35 1 1.7689 -11.0546 1.3246 36 1 0.2532 -11.2621 0.3945 37 1 -0.8716 -12.2180 2.2022 38 1 0.7802 -12.6214 2.7494 39 1 -1.1220 -10.8170 3.9906 40 1 0.5299 -11.2205 4.5378 41 1 -0.2065 -8.6944 3.6705 42 1 1.4608 -9.3310 3.5267 43 1 3.0361 -3.4398 0.8422 44 1 2.6147 -4.0039 -0.8038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:54 Heat of formation + Delta-G solvation = -117.289292 kcal Electronic energy + Delta-G solvation = -22452.558602 eV Core-core repulsion = 19175.231258 eV Total energy + Delta-G solvation = -3277.327344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56659 -38.41404 -37.18183 -34.25849 -33.11848 -32.23458 -29.92507 -28.89351 -28.57084 -27.73256 -25.18509 -23.28034 -21.96517 -20.43455 -20.01582 -19.67993 -18.57196 -17.19299 -16.56591 -16.06677 -15.47846 -15.02023 -14.97212 -14.84003 -14.24024 -14.05849 -13.56414 -13.46771 -13.02042 -12.89969 -12.27066 -12.15615 -11.80983 -11.73876 -11.49133 -11.35961 -11.30204 -11.23070 -11.13983 -10.88691 -10.83343 -10.64372 -10.63421 -10.59421 -10.50480 -10.41675 -10.03109 -9.42340 -9.25617 -8.68839 -8.23484 -7.95658 -6.29402 -4.37476 3.14365 3.21110 3.25939 3.29286 3.60921 4.26014 4.41603 4.48926 4.57568 4.92980 5.02069 5.06620 5.16895 5.31367 5.40172 5.44134 5.49420 5.54525 5.58153 5.59941 5.69775 5.74074 5.78217 5.82064 5.88513 5.93285 6.02064 6.04013 6.11364 6.17568 6.30300 6.32109 6.43076 6.44932 6.67098 6.89507 6.98359 7.28929 7.33409 7.72166 8.01567 8.19027 8.64282 8.71017 9.29607 9.38450 10.77941 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.003104 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.795569 B = 9017.464580 C = 9204.555625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.520 3.480 15 O -0.558 6.558 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.093 4.093 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.122 4.122 23 C 0.119 3.881 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -15.743 7.132 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.175 4.175 12 C -0.024 4.024 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.438 6.438 16 C -0.174 4.174 17 C -0.132 4.132 18 C -0.112 4.112 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.002 4.002 24 H 0.078 0.922 25 H 0.230 0.770 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.813 -16.426 6.723 17.970 hybrid contribution -0.096 1.527 0.249 1.550 sum -2.909 -14.899 6.972 16.705 Atomic orbital electron populations 1.69708 1.05954 1.27726 1.50090 1.24987 0.95025 0.99503 0.93463 0.86475 0.79546 0.82067 0.78888 1.19997 1.21128 1.20057 1.21411 0.93696 0.90212 1.52065 0.91798 1.19647 0.87025 0.90700 0.81910 1.86144 1.51489 1.56894 1.44538 1.23175 1.03150 0.89987 1.01184 1.22172 0.88623 0.96740 0.94817 1.48660 1.27255 1.05160 1.53040 1.20298 0.86256 0.81836 0.80732 1.90648 1.30592 1.78608 1.43951 1.21641 0.99527 0.94446 1.01769 1.21320 0.98795 0.91598 1.01448 1.22252 0.99538 0.94446 0.94946 1.22407 1.00908 0.94524 0.97994 1.22126 1.00685 0.98037 0.95411 1.22129 1.00964 0.95422 0.97782 1.22534 1.01405 0.96649 0.95404 1.22397 0.93769 0.86205 0.97879 0.92188 0.77035 0.89537 0.91382 0.92467 0.92937 0.89352 0.89406 0.91240 0.91226 0.90582 0.91472 0.91789 0.92099 0.92139 0.92063 0.92134 0.91691 0.91473 0.91153 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.82 10.76 55.43 0.60 -22.22 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.91 8.27 -34.44 -0.28 -14.19 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.96 0.87 -89.50 -0.08 5.88 16 10 O -0.58 -14.79 13.17 -35.23 -0.46 -15.25 16 11 C -0.14 -2.89 5.38 -24.90 -0.13 -3.03 16 12 C 0.10 1.77 6.48 -3.07 -0.02 1.75 16 13 N -0.61 -12.11 3.32 -170.38 -0.57 -12.68 16 14 C 0.52 9.81 7.85 -10.99 -0.09 9.73 16 15 O -0.56 -12.36 16.24 5.55 0.09 -12.27 16 16 C -0.13 -1.82 4.79 -27.88 -0.13 -1.95 16 17 C -0.09 -1.17 4.01 -26.73 -0.11 -1.27 16 18 C -0.09 -0.92 2.89 -88.42 -0.26 -1.18 16 19 C -0.12 -1.10 6.26 -25.07 -0.16 -1.25 16 20 C -0.12 -1.00 6.80 -25.62 -0.17 -1.18 16 21 C -0.13 -1.01 6.80 -25.62 -0.17 -1.19 16 22 C -0.12 -1.11 5.72 -24.87 -0.14 -1.26 16 23 C 0.12 2.70 6.09 -2.41 -0.01 2.68 16 24 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 25 H 0.38 9.56 7.57 45.56 0.34 9.90 16 26 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 27 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 32 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.57 8.11 -51.93 -0.42 0.14 16 42 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 43 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 44 H 0.07 1.68 8.03 -51.93 -0.42 1.26 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -28.23 348.29 -9.10 -37.34 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.13 Total: 9.44 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.86 Total: -4.69 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.03 Total: -34.90 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.37 Total: -27.52 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.23 -9.10 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.951 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds