Wall clock time and date at job start Tue Mar 31 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 115.56394 * 2 1 4 4 C 1.52997 * 117.50033 * 145.68909 * 2 1 3 5 5 C 1.50700 * 117.49985 * 214.97810 * 4 2 1 6 6 O 1.21286 * 120.00223 * 0.35975 * 5 4 2 7 7 N 1.34774 * 120.00351 * 180.36039 * 5 4 2 8 8 C 1.47426 * 125.64583 * 0.02562 * 7 5 4 9 9 C 1.54909 * 104.83437 * 155.83346 * 8 7 5 10 10 C 1.55161 * 101.57935 * 37.01215 * 9 8 7 11 11 O 1.42897 * 110.72406 * 82.86041 * 10 9 8 12 12 C 1.50698 * 110.71949 * 206.13510 * 10 9 8 13 13 H 1.08006 * 120.00262 * 117.94329 * 12 10 9 14 14 C 1.37875 * 120.00103 * 297.94606 * 12 10 9 15 15 N 1.31510 * 120.00084 * 6.34667 * 14 12 10 16 16 Si 1.86800 * 120.00165 * 186.34341 * 14 12 10 17 17 H 1.48500 * 109.47035 * 84.96614 * 16 14 12 18 18 H 1.48503 * 109.47395 * 204.96846 * 16 14 12 19 19 H 1.48503 * 109.47485 * 324.96876 * 16 14 12 20 20 C 1.47019 * 125.65372 * 179.97438 * 7 5 4 21 21 C 1.52994 * 60.00230 * 107.49073 * 4 2 1 22 22 C 1.52998 * 117.50445 * 107.49019 * 21 4 2 23 23 C 1.53003 * 117.49729 * 252.51642 * 21 4 2 24 24 H 1.09005 * 109.47082 * 325.70284 * 1 2 3 25 25 H 1.08995 * 109.47216 * 85.70309 * 1 2 3 26 26 H 1.09003 * 109.47247 * 205.70598 * 1 2 3 27 27 H 1.08999 * 109.47486 * 205.57787 * 3 2 1 28 28 H 1.09006 * 109.46453 * 325.57361 * 3 2 1 29 29 H 1.08995 * 109.47423 * 85.57014 * 3 2 1 30 30 H 1.09000 * 117.50028 * 359.97427 * 4 2 1 31 31 H 1.09003 * 110.36774 * 36.99826 * 8 7 5 32 32 H 1.08995 * 110.36804 * 274.67079 * 8 7 5 33 33 H 1.08997 * 111.00849 * 155.07967 * 9 8 7 34 34 H 1.08997 * 111.00668 * 278.93780 * 9 8 7 35 35 H 0.96702 * 114.00084 * 57.89636 * 11 10 9 36 36 H 0.96996 * 120.00248 * 180.02562 * 15 14 12 37 37 H 1.09007 * 109.88007 * 300.51219 * 20 7 5 38 38 H 1.08994 * 109.88333 * 61.52095 * 20 7 5 39 39 H 1.09001 * 109.46830 * 111.38878 * 22 21 4 40 40 H 1.08994 * 109.47350 * 231.39515 * 22 21 4 41 41 H 1.09002 * 109.46901 * 351.39555 * 22 21 4 42 42 H 1.08999 * 109.47047 * 8.60350 * 23 21 4 43 43 H 1.09002 * 109.47465 * 128.60599 * 23 21 4 44 44 H 1.09006 * 109.47049 * 248.60424 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 3.5292 -0.7811 1.4608 6 8 3.9685 0.3482 1.4066 7 7 4.1975 -1.7319 2.1432 8 6 3.7800 -3.1382 2.2894 9 6 5.0903 -3.9133 2.5754 10 6 5.8616 -2.9034 3.4657 11 8 5.4352 -3.0001 4.8261 12 6 7.3485 -3.1220 3.3547 13 1 7.9819 -2.3387 2.9649 14 6 7.9004 -4.3218 3.7506 15 7 7.1202 -5.3187 4.1070 16 14 9.7564 -4.5315 3.7807 17 1 10.2911 -4.0225 5.0692 18 1 10.0944 -5.9705 3.6384 19 1 10.3591 -3.7682 2.6586 20 6 5.4641 -1.5389 2.8643 21 6 2.2364 -1.1210 -0.7650 22 6 3.5489 -0.7759 -1.4715 23 6 1.3587 -2.1562 -1.4714 24 1 -0.3633 0.8490 0.5791 25 1 -0.3633 0.0770 -1.0247 26 1 -0.3634 -0.9260 0.4458 27 1 3.1832 1.3081 -0.4437 28 1 1.5821 2.0737 -0.5810 29 1 2.2754 1.7423 1.0245 30 1 1.6112 -1.8582 1.2686 31 1 3.3214 -3.4956 1.3674 32 1 3.0872 -3.2434 3.1243 33 1 4.8877 -4.8368 3.1178 34 1 5.6341 -4.1154 1.6526 35 1 5.5421 -3.8811 5.2102 36 1 7.5084 -6.1627 4.3859 37 1 6.2358 -1.1991 2.1736 38 1 5.3298 -0.8057 3.6596 39 1 3.9365 -1.6635 -1.9717 40 1 3.3700 0.0073 -2.2080 41 1 4.2753 -0.4260 -0.7380 42 1 0.7296 -2.6603 -0.7378 43 1 0.7292 -1.6569 -2.2080 44 1 1.9921 -2.8888 -1.9717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:30 Heat of formation + Delta-G solvation = -70.497066 kcal Electronic energy + Delta-G solvation = -23545.867576 eV Core-core repulsion = 20270.569295 eV Total energy + Delta-G solvation = -3275.298281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45963 -38.38915 -36.70611 -34.29515 -32.25469 -31.14454 -29.87685 -28.71270 -28.49182 -27.66159 -26.18097 -25.12499 -22.70246 -21.31663 -19.54661 -18.26827 -17.77059 -17.19449 -16.59966 -15.34119 -15.07603 -14.93163 -14.70118 -14.46337 -14.09838 -13.63833 -13.16923 -12.97591 -12.94485 -12.54725 -12.39750 -12.32364 -12.09356 -11.99924 -11.84138 -11.68789 -11.53187 -11.49642 -11.35677 -11.25969 -10.90159 -10.69411 -10.60383 -10.47834 -10.11562 -9.67069 -9.52124 -9.37496 -8.96847 -8.70081 -8.22161 -7.94881 -6.28507 -4.35645 2.88412 3.21033 3.27663 3.30741 3.51554 3.84060 4.27206 4.64624 4.70083 4.73046 4.97501 5.04203 5.14188 5.28165 5.48724 5.56351 5.59800 5.66329 5.68561 5.75026 5.85045 5.91908 5.92088 5.94749 5.96303 6.02262 6.09077 6.10176 6.16484 6.24999 6.33138 6.39387 6.46708 6.70078 6.72677 6.92694 7.00481 7.29173 7.36538 7.72830 8.03440 8.17593 8.65679 8.72443 9.27382 9.35677 10.78478 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.004355 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.929326 B = 6428.145560 C = 6461.421601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.173 4.173 5 C 0.553 3.447 6 O -0.550 6.550 7 N -0.605 5.605 8 C 0.095 3.905 9 C -0.131 4.131 10 C 0.246 3.754 11 O -0.584 6.584 12 C -0.535 4.535 13 H 0.063 0.937 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.124 3.876 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.113 4.113 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.379 0.621 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 3.571 -9.005 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.162 4.162 4 C -0.194 4.194 5 C 0.342 3.658 6 O -0.429 6.429 7 N -0.337 5.337 8 C -0.028 4.028 9 C -0.170 4.170 10 C 0.206 3.794 11 O -0.392 6.392 12 C -0.573 4.573 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.728 3.272 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.002 3.998 21 C -0.096 4.096 22 C -0.181 4.181 23 C -0.170 4.170 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.725 4.665 -9.097 15.556 hybrid contribution 1.102 -1.090 0.309 1.580 sum -10.623 3.576 -8.788 14.243 Atomic orbital electron populations 1.21334 0.91983 1.01970 1.01711 1.21672 0.94210 0.91750 1.01457 1.21366 0.99997 0.92320 1.02470 1.22689 0.97897 1.04008 0.94851 1.19170 0.84338 0.83944 0.78360 1.90647 1.69239 1.20475 1.62576 1.48599 1.24201 1.10343 1.50539 1.22505 0.99419 0.81145 0.99707 1.23296 0.92771 0.99524 1.01420 1.19464 0.92252 0.87939 0.79706 1.86166 1.87629 1.37181 1.28212 1.21482 0.91939 1.00280 1.43621 0.91836 1.24966 0.98790 0.95218 0.93888 1.69769 1.35189 1.03420 1.44908 0.86463 0.84742 0.77156 0.78806 1.20291 1.21137 1.19794 1.22039 0.83792 0.99261 0.94675 1.21655 0.98308 0.99446 0.90231 1.21459 0.94801 1.01314 1.00485 1.21359 0.98642 0.97093 0.99930 0.92068 0.92008 0.92466 0.91095 0.93854 0.91479 0.86610 0.92138 0.92255 0.89313 0.91468 0.77237 0.92303 0.91134 0.92278 0.92218 0.92017 0.91144 0.92319 0.91981 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.84 37.15 0.33 -0.80 16 2 C -0.09 -1.16 2.70 -154.51 -0.42 -1.58 16 3 C -0.10 -1.46 7.90 37.16 0.29 -1.17 16 4 C -0.17 -2.56 4.54 -91.78 -0.42 -2.98 16 5 C 0.55 10.43 6.23 -10.99 -0.07 10.37 16 6 O -0.55 -11.54 12.55 5.55 0.07 -11.47 16 7 N -0.60 -12.12 3.33 -170.52 -0.57 -12.69 16 8 C 0.09 1.75 6.47 -2.53 -0.02 1.73 16 9 C -0.13 -2.83 5.38 -24.58 -0.13 -2.97 16 10 C 0.25 5.93 0.84 -89.94 -0.08 5.86 16 11 O -0.58 -14.54 13.07 -35.23 -0.46 -15.00 16 12 C -0.53 -14.02 8.21 -34.44 -0.28 -14.30 16 13 H 0.06 1.68 7.58 -52.48 -0.40 1.28 16 14 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 15 N -0.89 -22.80 10.75 55.43 0.60 -22.20 16 16 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.12 2.83 6.21 -3.07 -0.02 2.81 16 21 C -0.10 -1.21 2.70 -154.51 -0.42 -1.63 16 22 C -0.12 -1.66 8.19 37.16 0.30 -1.36 16 23 C -0.11 -1.13 8.88 37.16 0.33 -0.80 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 26 H 0.06 0.54 7.78 -51.93 -0.40 0.13 16 27 H 0.07 1.09 5.13 -51.93 -0.27 0.82 16 28 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 1.06 7.26 -51.93 -0.38 0.68 16 30 H 0.12 1.58 7.61 -51.93 -0.40 1.18 16 31 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.98 7.45 -51.93 -0.39 1.59 16 34 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 35 H 0.38 9.29 7.74 45.56 0.35 9.64 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.07 1.64 7.66 -51.92 -0.40 1.24 16 38 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.06 0.74 7.99 -51.93 -0.42 0.32 16 41 H 0.07 1.16 5.28 -51.93 -0.27 0.88 16 42 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 43 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 44 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -27.57 340.48 -7.59 -35.16 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.65 Total: 10.86 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.68 Total: -5.02 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.03 Total: -34.89 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.39 Total: -26.48 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.57 -7.59 -35.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.336 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds