Wall clock time and date at job start Tue Mar 31 2020 07:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.50697 * 110.43394 * 305.80464 * 3 2 1 5 5 O 1.21287 * 119.99751 * 118.65286 * 4 3 2 6 6 N 1.34779 * 120.00516 * 298.66046 * 4 3 2 7 7 C 1.47294 * 125.78987 * 354.97985 * 6 4 3 8 8 C 1.54323 * 107.30619 * 178.92440 * 7 6 4 9 9 C 1.55158 * 102.94132 * 337.81640 * 8 7 6 10 10 O 1.42897 * 111.00199 * 277.42562 * 9 8 7 11 11 C 1.50703 * 111.00413 * 153.57416 * 9 8 7 12 12 H 1.07996 * 120.00161 * 247.80372 * 11 9 8 13 13 C 1.37876 * 119.99626 * 67.80122 * 11 9 8 14 14 N 1.31515 * 120.00487 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99777 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47234 * 60.00251 * 15 13 11 17 17 H 1.48499 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47227 * 300.00299 * 15 13 11 19 19 C 1.47419 * 125.65130 * 174.97660 * 6 4 3 20 20 C 1.54888 * 110.48521 * 68.34894 * 3 2 1 21 21 C 1.55237 * 102.58427 * 156.68090 * 20 3 2 22 22 C 1.54271 * 104.23035 * 322.07748 * 21 20 3 23 23 C 1.53870 * 106.59851 * 23.61920 * 22 21 20 24 24 H 1.09003 * 109.47434 * 295.15232 * 1 2 3 25 25 H 1.09002 * 109.47406 * 55.15282 * 1 2 3 26 26 H 1.09008 * 109.47347 * 175.15408 * 1 2 3 27 27 H 1.09001 * 109.47173 * 239.99866 * 2 1 3 28 28 H 1.09000 * 109.47383 * 120.00397 * 2 1 3 29 29 H 1.08999 * 109.85657 * 59.49680 * 7 6 4 30 30 H 1.09001 * 109.99587 * 298.43128 * 7 6 4 31 31 H 1.08992 * 110.72379 * 219.45075 * 8 7 6 32 32 H 1.09002 * 110.71940 * 96.17683 * 8 7 6 33 33 H 0.96700 * 114.00031 * 292.19246 * 10 9 8 34 34 H 0.96999 * 120.00423 * 179.97438 * 14 13 11 35 35 H 1.08998 * 110.36863 * 85.26178 * 19 6 4 36 36 H 1.09000 * 110.36965 * 323.04675 * 19 6 4 37 37 H 1.09003 * 110.75169 * 275.06694 * 20 3 2 38 38 H 1.09000 * 110.75439 * 38.43955 * 20 3 2 39 39 H 1.09008 * 110.46675 * 203.39627 * 21 20 3 40 40 H 1.08994 * 110.47509 * 80.77691 * 21 20 3 41 41 H 1.08994 * 110.03594 * 264.32802 * 22 21 20 42 42 H 1.09004 * 110.02737 * 142.89950 * 22 21 20 43 43 H 1.09002 * 110.03279 * 240.71104 * 23 22 21 44 44 H 1.09000 * 110.03634 * 119.28138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4365 2.2139 -1.1453 5 8 0.7431 3.1843 -0.9242 6 7 1.6670 1.8256 -2.4152 7 6 2.5669 0.7371 -2.8332 8 6 2.4882 0.6415 -4.3714 9 6 1.1221 1.3040 -4.6913 10 8 0.0503 0.3735 -4.5251 11 6 1.1170 1.8880 -6.0805 12 1 1.0734 2.9585 -6.2161 13 6 1.1681 1.0555 -7.1784 14 7 1.2207 -0.2482 -7.0133 15 14 1.1611 1.7793 -8.9005 16 1 2.3390 2.6677 -9.0688 17 1 1.2215 0.6818 -9.8990 18 1 -0.0835 2.5638 -9.1026 19 6 1.0593 2.4206 -3.6193 20 6 1.7160 2.1320 1.3486 21 6 2.7746 3.2657 1.4118 22 6 4.0473 2.6297 0.8153 23 6 3.5802 1.4706 -0.0824 24 1 -0.3634 0.4368 0.9302 25 1 -0.3634 0.5872 -0.8434 26 1 -0.3634 -1.0240 -0.0868 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2435 -0.2029 -2.3863 30 1 3.5891 0.9604 -2.5274 31 1 2.4969 -0.3995 -4.6941 32 1 3.3038 1.1968 -4.8346 33 1 0.0480 -0.3438 -5.1736 34 1 1.2563 -0.8339 -7.7857 35 1 1.6316 3.2898 -3.9431 36 1 0.0242 2.7003 -3.4232 37 1 0.7064 2.5429 1.3395 38 1 1.8439 1.4369 2.1783 39 1 2.9476 3.5685 2.4446 40 1 2.4567 4.1181 0.8115 41 1 4.6846 2.2501 1.6139 42 1 4.5898 3.3660 0.2223 43 1 3.9908 0.5283 0.2806 44 1 3.8960 1.6443 -1.1111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:14 Heat of formation + Delta-G solvation = -99.502212 kcal Electronic energy + Delta-G solvation = -24122.366231 eV Core-core repulsion = 20845.810193 eV Total energy + Delta-G solvation = -3276.556038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43809 -37.85944 -36.48176 -34.37578 -33.10739 -32.14847 -29.89808 -28.92102 -28.09483 -27.62445 -25.15879 -22.98095 -22.64350 -20.87791 -20.26497 -19.59890 -18.28518 -17.17493 -16.16886 -15.57171 -15.34071 -15.02078 -14.97575 -14.72692 -14.01363 -13.52431 -13.48519 -13.21764 -12.97002 -12.75724 -12.26482 -12.02624 -11.88324 -11.70025 -11.47948 -11.35389 -11.30580 -11.08500 -11.05945 -10.88670 -10.86169 -10.58642 -10.51632 -10.43639 -10.32631 -10.21369 -9.94921 -9.43156 -9.09493 -8.68126 -8.21329 -7.90219 -6.31245 -4.38869 3.16679 3.20372 3.25343 3.28621 3.61623 4.25067 4.51280 4.68353 4.71133 4.94974 5.12502 5.24891 5.30352 5.42506 5.47374 5.56115 5.60463 5.70017 5.74669 5.76232 5.85514 5.92676 5.94150 5.97455 6.05108 6.08858 6.12505 6.27008 6.30159 6.33464 6.40713 6.45162 6.47427 6.58584 6.69187 6.89636 7.00988 7.29353 7.32111 7.72239 7.98742 8.22169 8.62555 8.74968 9.30175 9.47038 10.76369 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.004881 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.990729 B = 5735.204576 C = 5922.869064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.078 4.078 4 C 0.543 3.457 5 O -0.555 6.555 6 N -0.604 5.604 7 C 0.092 3.908 8 C -0.140 4.140 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.120 3.880 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.123 4.123 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.385 0.615 34 H 0.270 0.730 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -1.010 12.666 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.081 4.081 4 C 0.331 3.669 5 O -0.434 6.434 6 N -0.336 5.336 7 C -0.030 4.030 8 C -0.179 4.179 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.002 4.002 20 C -0.137 4.137 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.927 -0.253 13.242 14.131 hybrid contribution 0.296 -0.162 -1.557 1.593 sum 5.223 -0.415 11.685 12.805 Atomic orbital electron populations 1.21784 0.95269 1.01780 1.02200 1.21694 0.96744 0.93910 1.02738 1.21614 0.95933 0.95982 0.94590 1.19834 0.80469 0.84150 0.82461 1.90624 1.40544 1.28077 1.84168 1.48569 1.44728 1.34890 1.05454 1.22517 0.92226 0.89845 0.98399 1.23215 1.01477 1.03087 0.90139 1.19552 0.83065 0.85223 0.91180 1.86097 1.51585 1.42438 1.59267 1.21457 1.51780 0.93910 0.90259 0.91754 1.24977 0.93408 0.94829 0.99704 1.69550 1.50322 1.02458 1.31478 0.86465 0.78896 0.78708 0.82861 1.20049 1.21092 1.19983 1.22344 0.97860 0.96462 0.83507 1.22460 1.00244 0.96738 0.94265 1.22416 0.94727 0.98696 1.00372 1.22129 0.97811 0.97445 0.98721 1.22434 0.93175 0.99203 1.01195 0.92843 0.92107 0.92624 0.90563 0.91352 0.91777 0.92495 0.89947 0.91490 0.76309 0.92028 0.91401 0.91371 0.90293 0.91270 0.91981 0.91067 0.91927 0.92037 0.90910 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.49 37.15 0.35 -1.86 16 2 C -0.11 -1.51 4.70 -26.73 -0.13 -1.63 16 3 C -0.08 -1.13 0.28 -154.00 -0.04 -1.17 16 4 C 0.54 10.24 4.82 -10.99 -0.05 10.19 16 5 O -0.56 -12.18 15.50 5.55 0.09 -12.09 16 6 N -0.60 -11.91 3.30 -170.30 -0.56 -12.47 16 7 C 0.09 1.65 5.54 -2.92 -0.02 1.63 16 8 C -0.14 -2.96 5.64 -24.90 -0.14 -3.10 16 9 C 0.25 5.99 0.89 -89.62 -0.08 5.91 16 10 O -0.58 -14.81 13.18 -35.23 -0.46 -15.27 16 11 C -0.54 -13.83 8.25 -34.44 -0.28 -14.12 16 12 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 13 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 14 N -0.90 -22.85 10.79 55.43 0.60 -22.26 16 15 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.12 2.70 6.06 -2.53 -0.02 2.68 16 20 C -0.10 -1.31 4.86 -24.55 -0.12 -1.43 16 21 C -0.12 -1.56 6.54 -24.88 -0.16 -1.73 16 22 C -0.12 -1.42 6.80 -25.61 -0.17 -1.60 16 23 C -0.12 -1.53 5.39 -25.61 -0.14 -1.67 16 24 H 0.05 0.71 7.70 -51.93 -0.40 0.31 16 25 H 0.06 1.09 6.92 -51.93 -0.36 0.73 16 26 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 27 H 0.08 1.06 5.01 -51.93 -0.26 0.80 16 28 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.06 1.09 5.39 -51.93 -0.28 0.81 16 30 H 0.06 0.88 5.72 -51.93 -0.30 0.59 16 31 H 0.08 1.81 7.85 -51.93 -0.41 1.41 16 32 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.38 9.87 6.93 45.56 0.32 10.18 16 34 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.07 1.50 8.01 -51.93 -0.42 1.08 16 36 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 38 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 39 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 44 H 0.08 1.04 4.90 -51.93 -0.25 0.79 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -27.66 330.39 -7.93 -35.60 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -6.46 Total: 12.65 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.09 Total: -6.14 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.04 Total: -34.73 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.38 Total: -27.36 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.66 -7.93 -35.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.907 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds