Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47071 * 2 1 4 4 C 1.53000 * 109.46917 * 119.99344 * 2 1 3 5 5 C 1.52997 * 115.55270 * 273.39109 * 4 2 1 6 6 C 1.53005 * 117.49920 * 127.68666 * 4 2 1 7 7 C 1.53002 * 59.99960 * 252.50769 * 6 4 2 8 8 H 1.08990 * 117.51906 * 252.51420 * 7 6 4 9 9 C 1.50704 * 117.49696 * 107.48640 * 7 6 4 10 10 O 1.21275 * 120.00059 * 329.67408 * 9 7 6 11 11 N 1.34777 * 119.99651 * 149.95301 * 9 7 6 12 12 C 1.47023 * 125.65107 * 359.41462 * 11 9 7 13 13 C 1.54333 * 107.26606 * 178.84926 * 12 11 9 14 14 C 1.55156 * 103.01893 * 338.14200 * 13 12 11 15 15 O 1.42904 * 111.03627 * 277.21398 * 14 13 12 16 16 C 1.50704 * 111.00195 * 153.37938 * 14 13 12 17 17 H 1.07998 * 120.00469 * 247.79882 * 16 14 13 18 18 C 1.37886 * 119.99980 * 67.80153 * 16 14 13 19 19 N 1.31520 * 119.99560 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00007 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47294 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47141 * 120.00247 * 20 18 16 23 23 H 1.48501 * 109.47201 * 240.00024 * 20 18 16 24 24 C 1.47429 * 125.64467 * 179.72234 * 11 9 7 25 25 H 1.09001 * 109.46818 * 306.45258 * 1 2 3 26 26 H 1.08997 * 109.46852 * 66.45106 * 1 2 3 27 27 H 1.08998 * 109.47000 * 186.45181 * 1 2 3 28 28 H 1.08996 * 109.47279 * 239.99063 * 2 1 3 29 29 H 1.09005 * 109.47229 * 172.52687 * 3 2 1 30 30 H 1.09007 * 109.46414 * 292.51626 * 3 2 1 31 31 H 1.08993 * 109.47564 * 52.52286 * 3 2 1 32 32 H 1.08997 * 109.47533 * 205.66908 * 5 4 2 33 33 H 1.09004 * 109.47505 * 325.67236 * 5 4 2 34 34 H 1.09001 * 109.47003 * 85.66912 * 5 4 2 35 35 H 1.08998 * 117.49825 * 145.01898 * 6 4 2 36 36 H 1.09002 * 117.49526 * 359.97438 * 6 4 2 37 37 H 1.08997 * 109.87672 * 298.40026 * 12 11 9 38 38 H 1.09002 * 109.88182 * 59.55945 * 12 11 9 39 39 H 1.08996 * 110.85227 * 219.67250 * 13 12 11 40 40 H 1.09003 * 110.66330 * 96.52448 * 13 12 11 41 41 H 0.96703 * 113.99614 * 292.21703 * 15 14 13 42 42 H 0.97001 * 119.99220 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.37000 * 322.93101 * 24 11 9 44 44 H 1.08997 * 110.36488 * 85.14392 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.1829 0.1476 2.5006 6 6 3.0577 -1.8460 1.0498 7 6 1.6177 -2.1785 1.4457 8 1 1.4416 -2.5184 2.4662 9 6 0.7312 -2.7939 0.3937 10 8 0.9050 -2.5282 -0.7768 11 7 -0.2583 -3.6350 0.7542 12 6 -0.5747 -4.0464 2.1298 13 6 -1.7956 -4.9875 2.0571 14 6 -2.4450 -4.6133 0.6986 15 8 -3.2806 -3.4613 0.8294 16 6 -3.2179 -5.7759 0.1308 17 1 -2.8729 -6.2667 -0.7671 18 6 -4.3655 -6.2129 0.7579 19 7 -4.7859 -5.6147 1.8512 20 14 -5.3238 -7.6534 0.0538 21 1 -4.6466 -8.1466 -1.1722 22 1 -5.3850 -8.7455 1.0582 23 1 -6.7015 -7.2138 -0.2839 24 6 -1.1987 -4.2999 -0.1662 25 1 -0.3633 0.6106 0.8266 26 1 -0.3633 0.4106 -0.9421 27 1 -0.3633 -1.0211 0.1155 28 1 1.8933 -0.5140 -0.8899 29 1 3.1218 1.4455 0.1337 30 1 1.7900 1.9162 -0.9494 31 1 1.5717 1.9935 0.8155 32 1 2.9366 -0.2845 3.1588 33 1 2.4867 1.1538 2.2117 34 1 1.2272 0.1926 3.0228 35 1 3.8294 -1.9672 1.8100 36 1 3.3636 -2.0726 0.0284 37 1 0.2757 -4.5718 2.5643 38 1 -0.8190 -3.1710 2.7316 39 1 -2.4840 -4.7943 2.8798 40 1 -1.4781 -6.0303 2.0585 41 1 -4.0736 -3.6093 1.3626 42 1 -5.5935 -5.9219 2.2920 43 1 -1.4637 -3.6318 -0.9857 44 1 -0.7627 -5.2205 -0.5541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = -69.386570 kcal Electronic energy + Delta-G solvation = -23560.098484 eV Core-core repulsion = 20284.848357 eV Total energy + Delta-G solvation = -3275.250126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.28880 -38.26209 -36.59454 -34.28100 -33.30008 -32.14996 -29.88782 -28.80071 -28.24811 -26.74098 -25.58110 -23.46416 -22.41715 -21.85103 -19.72940 -19.04410 -17.91547 -17.29122 -16.72377 -15.49728 -15.14051 -14.99310 -14.70513 -14.44236 -13.87904 -13.71452 -13.55611 -13.12878 -12.92895 -12.57060 -12.36868 -12.21908 -11.97973 -11.75906 -11.64107 -11.56448 -11.33653 -11.32525 -11.11085 -10.89995 -10.86723 -10.61204 -10.50113 -10.45284 -10.05190 -9.94050 -9.62103 -9.42713 -9.16632 -8.69702 -8.21481 -7.92981 -6.31800 -4.39322 2.84998 3.17216 3.26451 3.30769 3.55419 4.02756 4.24852 4.65447 4.76894 4.93171 4.95072 4.99434 5.22160 5.34146 5.45315 5.55588 5.56178 5.67212 5.73885 5.76474 5.78731 5.87070 5.87896 5.97343 6.01745 6.08572 6.10311 6.13083 6.14547 6.31100 6.42498 6.44574 6.63716 6.67000 6.72343 6.88659 7.00628 7.29320 7.31839 7.72105 7.98152 8.19309 8.62736 8.73472 9.29892 9.46987 10.75966 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.004235 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.218785 B = 6609.498999 C = 6692.447719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.144 4.144 7 C -0.183 4.183 8 H 0.115 0.885 9 C 0.557 3.443 10 O -0.552 6.552 11 N -0.605 5.605 12 C 0.101 3.899 13 C -0.140 4.140 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.535 4.535 17 H 0.066 0.934 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.121 3.879 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 8.127 3.474 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.178 4.178 6 C -0.181 4.181 7 C -0.204 4.204 8 H 0.133 0.867 9 C 0.346 3.654 10 O -0.433 6.433 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.178 4.178 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.001 4.001 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.237 0.763 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.131 8.566 2.606 15.077 hybrid contribution -1.107 -1.287 0.351 1.733 sum 11.024 7.279 2.958 13.537 Atomic orbital electron populations 1.21892 0.94613 1.02850 1.00677 1.20679 0.96123 0.94837 0.96078 1.21906 1.00557 0.96230 1.01370 1.21536 1.01569 0.87928 0.97618 1.21490 1.01806 0.99573 0.94904 1.23204 0.90237 1.01556 1.03134 1.22410 0.98011 1.00238 0.99725 0.86717 1.19004 0.79869 0.77904 0.88579 1.90639 1.71477 1.61939 1.19202 1.48509 1.31139 1.44660 1.09343 1.22134 0.98504 0.98487 0.83043 1.23202 0.94576 0.97482 1.02566 1.19567 0.86187 0.84319 0.89051 1.86102 1.39371 1.37479 1.76443 1.21541 1.09379 1.14765 1.11633 0.91600 1.24993 0.96855 0.96894 0.94265 1.69577 1.24087 1.41709 1.18427 0.86348 0.79712 0.81659 0.79196 1.19554 1.20806 1.20730 1.22359 0.88582 0.95984 0.93175 0.93678 0.93117 0.91539 0.89455 0.92835 0.92915 0.92681 0.92549 0.91116 0.92062 0.88376 0.87925 0.92988 0.92465 0.89923 0.91439 0.76284 0.92133 0.91167 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.60 37.16 0.32 -1.97 16 2 C -0.06 -0.82 2.22 -90.62 -0.20 -1.02 16 3 C -0.14 -1.57 7.90 37.16 0.29 -1.28 16 4 C -0.09 -1.10 1.92 -154.51 -0.30 -1.40 16 5 C -0.12 -1.24 9.51 37.16 0.35 -0.89 16 6 C -0.14 -1.80 9.36 -26.73 -0.25 -2.05 16 7 C -0.18 -2.70 5.45 -91.77 -0.50 -3.20 16 8 H 0.11 1.55 7.21 -51.93 -0.37 1.18 16 9 C 0.56 10.53 5.15 -10.98 -0.06 10.47 16 10 O -0.55 -11.69 13.52 5.56 0.08 -11.62 16 11 N -0.60 -12.10 3.33 -170.51 -0.57 -12.67 16 12 C 0.10 1.85 5.95 -3.06 -0.02 1.83 16 13 C -0.14 -2.98 5.64 -24.89 -0.14 -3.12 16 14 C 0.25 6.01 0.89 -89.62 -0.08 5.93 16 15 O -0.58 -14.99 13.18 -35.23 -0.46 -15.46 16 16 C -0.53 -13.87 8.25 -34.44 -0.28 -14.15 16 17 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 18 C 0.07 1.84 5.30 -17.81 -0.09 1.74 16 19 N -0.90 -22.99 10.79 55.43 0.60 -22.39 16 20 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.12 2.72 6.08 -2.53 -0.02 2.70 16 25 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.28 4.68 -51.93 -0.24 1.04 16 28 H 0.09 1.40 6.64 -51.93 -0.34 1.06 16 29 H 0.05 0.52 8.04 -51.93 -0.42 0.11 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.05 0.56 6.97 -51.93 -0.36 0.19 16 32 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 33 H 0.07 0.64 5.70 -51.93 -0.30 0.35 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.10 1.39 7.88 -51.93 -0.41 0.98 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.84 7.85 -51.93 -0.41 1.44 16 40 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.39 9.98 6.93 45.56 0.32 10.30 16 42 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.07 1.69 8.04 -51.93 -0.42 1.27 16 44 H 0.07 1.52 8.02 -51.93 -0.42 1.10 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -27.59 340.72 -7.91 -35.50 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.70 Total: 12.86 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.97 Total: -6.40 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.03 Total: -35.06 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.39 Total: -27.08 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.59 -7.91 -35.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.886 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds