Wall clock time and date at job start Tue Mar 31 2020 07:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47262 * 119.99937 * 2 1 3 5 5 C 1.53002 * 115.55165 * 29.64384 * 4 2 1 6 6 C 1.53078 * 117.51650 * 243.92124 * 4 2 1 7 7 C 1.52996 * 59.98490 * 252.52111 * 6 4 2 8 8 H 1.09002 * 117.50349 * 252.49397 * 7 6 4 9 9 C 1.50701 * 117.49780 * 107.49569 * 7 6 4 10 10 O 1.21277 * 120.00619 * 272.94732 * 9 7 6 11 11 N 1.34783 * 119.99419 * 92.94738 * 9 7 6 12 12 C 1.47425 * 125.65209 * 0.02792 * 11 9 7 13 13 C 1.54904 * 104.83268 * 155.83405 * 12 11 9 14 14 C 1.55159 * 101.61827 * 36.99030 * 13 12 11 15 15 O 1.42902 * 110.72258 * 82.88019 * 14 13 12 16 16 C 1.50699 * 110.72052 * 206.15463 * 14 13 12 17 17 H 1.08000 * 120.00346 * 118.54133 * 16 14 13 18 18 C 1.37877 * 119.99992 * 298.54417 * 16 14 13 19 19 N 1.31520 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00262 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46907 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47271 * 120.00109 * 20 18 16 23 23 H 1.48499 * 109.47247 * 239.99963 * 20 18 16 24 24 C 1.47030 * 125.64592 * 179.97438 * 11 9 7 25 25 H 1.08992 * 109.47369 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46826 * 300.00414 * 1 2 3 27 27 H 1.08998 * 109.47214 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.47064 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.47051 * 174.27002 * 3 2 1 30 30 H 1.08998 * 109.47110 * 294.27122 * 3 2 1 31 31 H 1.08991 * 109.47234 * 54.27253 * 3 2 1 32 32 H 1.08994 * 109.47512 * 205.66956 * 5 4 2 33 33 H 1.09002 * 109.46618 * 325.67330 * 5 4 2 34 34 H 1.09002 * 109.46740 * 85.66798 * 5 4 2 35 35 H 1.08998 * 117.49163 * 145.03415 * 6 4 2 36 36 H 1.08996 * 117.50893 * 0.02562 * 6 4 2 37 37 H 1.08999 * 110.36551 * 36.99156 * 12 11 9 38 38 H 1.09002 * 110.36243 * 274.67325 * 12 11 9 39 39 H 1.08997 * 111.00517 * 155.08385 * 13 12 11 40 40 H 1.08999 * 111.00959 * 278.89571 * 13 12 11 41 41 H 0.96702 * 113.99509 * 61.44992 * 15 14 13 42 42 H 0.96997 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.88416 * 300.51654 * 24 11 9 44 44 H 1.08997 * 109.88000 * 61.67747 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1289 -1.8235 1.7930 6 6 2.8385 0.1009 2.2640 7 6 3.5508 -0.9248 1.3802 8 1 3.8956 -1.8441 1.8536 9 6 4.4225 -0.3996 0.2687 10 8 3.9385 -0.1485 -0.8146 11 7 5.7401 -0.2089 0.4786 12 6 6.4562 -0.4722 1.7401 13 6 7.9288 -0.7042 1.3193 14 6 8.0886 0.3195 0.1643 15 8 8.3771 1.6211 0.6785 16 6 9.1603 -0.1250 -0.7976 17 1 8.9106 -0.3264 -1.8288 18 6 10.4595 -0.2745 -0.3610 19 7 10.7635 -0.0297 0.8950 20 14 11.7881 -0.8247 -1.5533 21 1 11.1915 -1.0339 -2.8970 22 1 12.8420 0.2184 -1.6360 23 1 12.3870 -2.0965 -1.0747 24 6 6.7017 0.2950 -0.5129 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1252 1.4442 0.1026 30 1 1.7629 1.9259 -0.9368 31 1 1.5954 1.9851 0.8342 32 1 1.3108 -1.9519 2.8600 33 1 0.0871 -1.5457 1.6328 34 1 1.3397 -2.7583 1.2734 35 1 2.7142 -0.1437 3.3189 36 1 3.0000 1.1557 2.0418 37 1 6.0555 -1.3623 2.2252 38 1 6.3826 0.3887 2.4048 39 1 8.6099 -0.4773 2.1394 40 1 8.0771 -1.7231 0.9616 41 1 9.2018 1.6716 1.1809 42 1 11.6775 -0.1352 1.2021 43 1 6.7238 -0.3677 -1.3781 44 1 6.4219 1.3021 -0.8220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:50 Heat of formation + Delta-G solvation = -62.457906 kcal Electronic energy + Delta-G solvation = -23413.106222 eV Core-core repulsion = 20138.156545 eV Total energy + Delta-G solvation = -3274.949677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 6.38 seconds Orbital eigenvalues (eV) -40.37455 -38.33443 -36.66818 -34.32989 -33.06537 -32.23239 -29.77685 -29.29388 -28.34898 -26.35491 -25.35466 -23.56020 -22.77290 -21.83025 -19.75232 -18.82028 -18.00994 -17.31377 -16.68987 -15.53734 -15.39285 -14.97957 -14.48049 -14.34110 -14.24355 -13.79707 -13.44083 -13.20792 -13.01413 -12.75250 -12.36132 -12.16699 -12.03933 -11.79655 -11.59284 -11.42166 -11.37820 -11.36226 -10.92576 -10.90111 -10.70302 -10.62468 -10.51594 -10.46169 -10.11696 -10.08499 -9.66614 -9.39334 -8.98169 -8.68331 -8.22917 -7.94955 -6.30085 -4.37462 2.98205 3.17979 3.27092 3.31761 3.47904 3.86640 4.26066 4.64818 4.75872 4.86908 4.96120 4.98080 5.22845 5.30105 5.46164 5.56181 5.61262 5.65398 5.73464 5.75512 5.76661 5.79909 5.93730 5.96497 6.01394 6.04238 6.07775 6.11653 6.17312 6.25467 6.43155 6.44964 6.60110 6.70216 6.72359 6.91793 6.99511 7.29114 7.34508 7.72011 8.01439 8.15979 8.64747 8.70669 9.28947 9.37795 10.77465 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.004051 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.792410 B = 6911.010299 C = 7081.982970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.121 4.121 6 C -0.156 4.156 7 C -0.177 4.177 8 H 0.120 0.880 9 C 0.550 3.450 10 O -0.543 6.543 11 N -0.604 5.604 12 C 0.098 3.902 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.123 3.877 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.382 0.618 42 H 0.267 0.733 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -2.212 5.105 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.090 4.090 5 C -0.178 4.178 6 C -0.194 4.194 7 C -0.198 4.198 8 H 0.138 0.862 9 C 0.338 3.662 10 O -0.422 6.422 11 N -0.337 5.337 12 C -0.025 4.025 13 C -0.174 4.174 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.002 3.998 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.111 -1.943 4.339 15.841 hybrid contribution 1.584 -0.562 -0.082 1.683 sum -13.527 -2.505 4.257 14.400 Atomic orbital electron populations 1.21964 0.96067 1.01181 1.01169 1.20624 0.93880 0.96129 0.96768 1.22011 1.02292 0.95334 1.00275 1.21603 0.90196 0.99269 0.97895 1.21503 0.99341 0.96885 1.00071 1.23332 1.02305 0.97574 0.96141 1.22260 0.94543 1.02161 1.00790 0.86202 1.19201 0.80734 0.78058 0.88182 1.90636 1.72701 1.52604 1.26297 1.48637 1.06834 1.63406 1.14792 1.22464 0.94604 0.99349 0.86035 1.23299 0.91572 1.01203 1.01297 1.19473 0.89316 0.80716 0.89838 1.86136 1.46382 1.32154 1.74723 1.21558 0.92987 1.46033 0.96654 0.91741 1.24984 0.98639 0.93995 0.95382 1.69711 1.20022 1.49149 1.14644 0.86372 0.81230 0.78260 0.81195 1.19583 1.20744 1.20836 1.22059 0.88241 0.98367 0.91158 0.92622 0.93077 0.93030 0.88741 0.91491 0.93285 0.94001 0.92590 0.91060 0.92176 0.88375 0.87842 0.92295 0.92043 0.89429 0.91546 0.76827 0.92295 0.91082 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.00 37.16 0.30 -1.26 16 2 C -0.06 -0.75 2.37 -90.62 -0.21 -0.97 16 3 C -0.14 -2.05 7.04 37.16 0.26 -1.79 16 4 C -0.09 -1.11 2.51 -154.47 -0.39 -1.50 16 5 C -0.12 -1.19 9.38 37.16 0.35 -0.84 16 6 C -0.16 -1.92 8.99 -26.69 -0.24 -2.16 16 7 C -0.18 -2.52 4.95 -91.77 -0.45 -2.98 16 8 H 0.12 1.56 7.75 -51.93 -0.40 1.15 16 9 C 0.55 10.14 6.28 -10.98 -0.07 10.07 16 10 O -0.54 -11.18 12.23 5.56 0.07 -11.11 16 11 N -0.60 -11.91 3.33 -170.49 -0.57 -12.48 16 12 C 0.10 1.78 6.68 -2.53 -0.02 1.76 16 13 C -0.13 -2.89 5.46 -24.58 -0.13 -3.03 16 14 C 0.25 5.91 0.85 -89.91 -0.08 5.84 16 15 O -0.59 -14.57 13.08 -35.23 -0.46 -15.03 16 16 C -0.53 -13.94 8.22 -34.44 -0.28 -14.23 16 17 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 19 N -0.90 -22.80 10.69 55.43 0.59 -22.21 16 20 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.12 2.78 6.22 -3.04 -0.02 2.77 16 25 H 0.05 0.53 6.58 -51.93 -0.34 0.19 16 26 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.53 6.53 -51.93 -0.34 1.19 16 29 H 0.07 1.15 4.37 -51.93 -0.23 0.92 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.53 7.59 -51.93 -0.39 0.13 16 32 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 33 H 0.07 0.62 5.61 -51.93 -0.29 0.33 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.10 1.37 5.84 -51.93 -0.30 1.07 16 37 H 0.06 0.91 7.41 -51.93 -0.38 0.52 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 40 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 41 H 0.38 9.47 7.49 45.56 0.34 9.82 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 43 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 44 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -27.20 335.42 -7.86 -35.06 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.44 Total: 12.09 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.08 Total: -6.56 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.03 Total: -34.69 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.39 Total: -26.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.20 -7.86 -35.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.399 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.38 seconds