Wall clock time and date at job start Tue Mar 31 2020 07:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47262 * 119.99937 * 2 1 3 5 5 C 1.53002 * 115.55165 * 29.64384 * 4 2 1 6 6 C 1.53078 * 117.51650 * 243.92124 * 4 2 1 7 7 C 1.52996 * 59.98490 * 252.52111 * 6 4 2 8 8 H 1.09002 * 117.50349 * 252.49397 * 7 6 4 9 9 C 1.50701 * 117.49780 * 107.49569 * 7 6 4 10 10 O 1.21277 * 120.00619 * 272.94732 * 9 7 6 11 11 N 1.34783 * 119.99419 * 92.94738 * 9 7 6 12 12 C 1.47425 * 125.65209 * 0.02792 * 11 9 7 13 13 C 1.54904 * 104.83268 * 155.83405 * 12 11 9 14 14 C 1.55159 * 101.61827 * 36.99030 * 13 12 11 15 15 O 1.42902 * 110.72258 * 82.88019 * 14 13 12 16 16 C 1.50699 * 110.72052 * 206.15463 * 14 13 12 17 17 H 1.08000 * 120.00346 * 118.54133 * 16 14 13 18 18 C 1.37877 * 119.99992 * 298.54417 * 16 14 13 19 19 N 1.31520 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00262 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46907 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47271 * 120.00109 * 20 18 16 23 23 H 1.48499 * 109.47247 * 239.99963 * 20 18 16 24 24 C 1.47030 * 125.64592 * 179.97438 * 11 9 7 25 25 H 1.08992 * 109.47369 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46826 * 300.00414 * 1 2 3 27 27 H 1.08998 * 109.47214 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.47064 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.47051 * 174.27002 * 3 2 1 30 30 H 1.08998 * 109.47110 * 294.27122 * 3 2 1 31 31 H 1.08991 * 109.47234 * 54.27253 * 3 2 1 32 32 H 1.08994 * 109.47512 * 205.66956 * 5 4 2 33 33 H 1.09002 * 109.46618 * 325.67330 * 5 4 2 34 34 H 1.09002 * 109.46740 * 85.66798 * 5 4 2 35 35 H 1.08998 * 117.49163 * 145.03415 * 6 4 2 36 36 H 1.08996 * 117.50893 * 0.02562 * 6 4 2 37 37 H 1.08999 * 110.36551 * 36.99156 * 12 11 9 38 38 H 1.09002 * 110.36243 * 274.67325 * 12 11 9 39 39 H 1.08997 * 111.00517 * 155.08385 * 13 12 11 40 40 H 1.08999 * 111.00959 * 278.89571 * 13 12 11 41 41 H 0.96702 * 113.99509 * 61.44992 * 15 14 13 42 42 H 0.96997 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.88416 * 300.51654 * 24 11 9 44 44 H 1.08997 * 109.88000 * 61.67747 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1289 -1.8235 1.7930 6 6 2.8385 0.1009 2.2640 7 6 3.5508 -0.9248 1.3802 8 1 3.8956 -1.8441 1.8536 9 6 4.4225 -0.3996 0.2687 10 8 3.9385 -0.1485 -0.8146 11 7 5.7401 -0.2089 0.4786 12 6 6.4562 -0.4722 1.7401 13 6 7.9288 -0.7042 1.3193 14 6 8.0886 0.3195 0.1643 15 8 8.3771 1.6211 0.6785 16 6 9.1603 -0.1250 -0.7976 17 1 8.9106 -0.3264 -1.8288 18 6 10.4595 -0.2745 -0.3610 19 7 10.7635 -0.0297 0.8950 20 14 11.7881 -0.8247 -1.5533 21 1 11.1915 -1.0339 -2.8970 22 1 12.8420 0.2184 -1.6360 23 1 12.3870 -2.0965 -1.0747 24 6 6.7017 0.2950 -0.5129 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1252 1.4442 0.1026 30 1 1.7629 1.9259 -0.9368 31 1 1.5954 1.9851 0.8342 32 1 1.3108 -1.9519 2.8600 33 1 0.0871 -1.5457 1.6328 34 1 1.3397 -2.7583 1.2734 35 1 2.7142 -0.1437 3.3189 36 1 3.0000 1.1557 2.0418 37 1 6.0555 -1.3623 2.2252 38 1 6.3826 0.3887 2.4048 39 1 8.6099 -0.4773 2.1394 40 1 8.0771 -1.7231 0.9616 41 1 9.2018 1.6716 1.1809 42 1 11.6775 -0.1352 1.2021 43 1 6.7238 -0.3677 -1.3781 44 1 6.4219 1.3021 -0.8220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:42 Heat of formation + Delta-G solvation = -78.971423 kcal Electronic energy + Delta-G solvation = -23413.822302 eV Core-core repulsion = 20138.156545 eV Total energy + Delta-G solvation = -3275.665757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.67229 -39.85290 -38.16076 -36.08661 -34.23006 -34.12694 -31.42407 -30.36211 -29.97018 -27.60967 -26.87075 -24.94122 -23.88794 -23.23867 -21.53121 -20.23337 -19.18878 -19.10080 -18.15455 -17.01975 -16.92430 -16.77401 -16.06282 -15.79232 -15.30940 -15.11679 -14.87287 -14.71974 -14.13785 -13.94365 -13.82456 -13.48731 -13.34509 -13.26716 -13.18229 -13.12156 -12.68762 -12.62554 -12.44961 -12.40712 -12.27493 -12.03307 -11.88819 -11.79452 -11.56753 -11.28328 -11.08499 -10.79106 -10.66212 -10.29545 -10.12468 -9.55914 -8.26284 -6.40779 1.38697 1.43076 1.53021 1.59742 2.02661 2.38629 2.78236 2.99074 3.49917 3.71586 3.83308 3.87852 3.98041 4.00967 4.12877 4.30129 4.32978 4.40849 4.50244 4.57736 4.66494 4.68733 4.76837 4.85623 4.86521 4.91588 4.98467 5.03537 5.08027 5.08571 5.16556 5.24477 5.25451 5.30097 5.43541 5.46031 5.51493 5.55849 5.66892 5.74774 6.06950 6.60188 6.68279 7.22080 7.29601 7.38644 8.79857 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.004051 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.792410 B = 6911.010299 C = 7081.982970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.084 4.084 5 C -0.117 4.117 6 C -0.141 4.141 7 C -0.192 4.192 8 H 0.141 0.859 9 C 0.544 3.456 10 O -0.572 6.572 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.125 4.125 14 C 0.236 3.764 15 O -0.592 6.592 16 C -0.565 4.565 17 H 0.049 0.951 18 C 0.039 3.961 19 N -0.904 5.904 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.274 1.274 24 C 0.131 3.869 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.380 0.620 42 H 0.272 0.728 43 H 0.055 0.945 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 -3.296 7.107 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.085 4.085 5 C -0.174 4.174 6 C -0.178 4.178 7 C -0.212 4.212 8 H 0.158 0.842 9 C 0.335 3.665 10 O -0.452 6.452 11 N -0.343 5.343 12 C -0.013 4.013 13 C -0.164 4.164 14 C 0.196 3.804 15 O -0.401 6.401 16 C -0.603 4.603 17 H 0.067 0.933 18 C -0.162 4.162 19 N -0.543 5.543 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.203 1.203 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.229 0.771 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.577 -3.031 6.361 18.012 hybrid contribution 2.035 -0.163 -0.772 2.182 sum -14.542 -3.194 5.589 15.903 Atomic orbital electron populations 1.21906 0.93524 1.02386 1.01873 1.20574 0.95998 0.94965 0.96203 1.21951 1.00274 0.96641 1.00599 1.21760 0.89349 0.99939 0.97434 1.21535 0.99268 0.95556 1.01048 1.23434 1.00446 0.96369 0.97552 1.22279 0.95000 1.03568 1.00379 0.84161 1.20071 0.80337 0.77062 0.89052 1.90629 1.73046 1.53568 1.28003 1.48722 1.07188 1.63850 1.14546 1.22438 0.92179 1.01282 0.85365 1.23070 0.93927 0.99541 0.99817 1.19590 0.89273 0.80862 0.90705 1.86123 1.46192 1.33042 1.74758 1.21747 0.94471 1.47498 0.96551 0.93318 1.25566 0.99982 0.93837 0.96858 1.69758 1.20589 1.48647 1.15285 0.85511 0.78850 0.78158 0.79096 1.20234 1.20288 1.19921 1.21732 0.88802 0.97022 0.91617 0.91160 0.91567 0.93165 0.92117 0.94636 0.94162 0.92062 0.90675 0.89704 0.92221 0.85126 0.89215 0.88594 0.91318 0.90214 0.92617 0.77083 0.91857 0.92688 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.00 71.98 0.58 -2.07 16 2 C -0.06 -1.53 2.37 -10.79 -0.03 -1.56 16 3 C -0.14 -3.96 7.04 71.98 0.51 -3.46 16 4 C -0.08 -1.88 2.51 -52.16 -0.13 -2.01 16 5 C -0.12 -1.83 9.38 71.98 0.68 -1.15 16 6 C -0.14 -3.02 8.99 30.62 0.28 -2.75 16 7 C -0.19 -5.06 4.95 -11.54 -0.06 -5.12 16 8 H 0.14 3.14 7.75 -2.39 -0.02 3.12 16 9 C 0.54 20.09 6.28 87.66 0.55 20.64 16 10 O -0.57 -24.39 12.23 -3.02 -0.04 -24.43 16 11 N -0.61 -24.21 3.33 -811.69 -2.70 -26.91 16 12 C 0.11 3.82 6.68 86.85 0.58 4.40 16 13 C -0.12 -5.35 5.46 31.99 0.17 -5.17 16 14 C 0.24 11.60 0.85 -10.34 -0.01 11.59 16 15 O -0.59 -30.23 13.08 -148.98 -1.95 -32.18 16 16 C -0.56 -30.34 8.22 25.60 0.21 -30.13 16 17 H 0.05 2.69 7.57 -2.91 -0.02 2.67 16 18 C 0.04 2.02 5.28 84.65 0.45 2.46 16 19 N -0.90 -45.95 10.69 21.45 0.23 -45.72 16 20 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 C 0.13 6.19 6.22 86.74 0.54 6.73 16 25 H 0.07 1.13 6.58 -2.39 -0.02 1.11 16 26 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 2.00 6.53 -2.39 -0.02 1.98 16 29 H 0.03 1.24 4.37 -2.39 -0.01 1.23 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.48 7.59 -2.39 -0.02 1.46 16 32 H 0.07 0.91 7.90 -2.39 -0.02 0.90 16 33 H 0.08 1.11 5.61 -2.39 -0.01 1.09 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.13 1.99 8.05 -2.39 -0.02 1.97 16 36 H 0.09 2.21 5.84 -2.39 -0.01 2.19 16 37 H 0.10 2.66 7.41 -2.39 -0.02 2.65 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 3.52 7.54 -2.39 -0.02 3.50 16 40 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 41 H 0.38 19.23 7.49 -74.06 -0.55 18.67 16 42 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 43 H 0.05 2.71 7.66 -2.38 -0.02 2.69 16 44 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -60.61 335.42 2.32 -58.29 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.44 Total: 34.95 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.31 Total: -7.59 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -2.47 Total: -72.64 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -1.98 Total: -56.61 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -60.61 2.32 -58.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.684 kcal (2) G-P(sol) polarization free energy of solvation -60.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds