Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.05330 * 2 1 4 4 C 1.54265 * 110.03302 * 238.58386 * 2 1 3 5 5 C 1.54891 * 104.19649 * 217.10501 * 4 2 1 6 6 C 1.54894 * 102.74771 * 37.93907 * 5 4 2 7 7 C 1.53877 * 110.03187 * 121.41408 * 2 1 3 8 8 H 1.09001 * 110.07359 * 238.59480 * 7 2 1 9 9 C 1.50700 * 110.03115 * 0.02562 * 7 2 1 10 10 O 1.21282 * 120.00547 * 84.61827 * 9 7 2 11 11 N 1.34777 * 119.99617 * 264.61974 * 9 7 2 12 12 C 1.47426 * 125.64935 * 0.04425 * 11 9 7 13 13 C 1.55128 * 104.93959 * 203.96542 * 12 11 9 14 14 C 1.55152 * 101.48652 * 323.22270 * 13 12 11 15 15 O 1.42901 * 110.72096 * 276.83003 * 14 13 12 16 16 C 1.50699 * 110.72104 * 153.73682 * 14 13 12 17 17 H 1.08003 * 119.99809 * 239.64647 * 16 14 13 18 18 C 1.37876 * 120.00359 * 59.63392 * 16 14 13 19 19 N 1.31523 * 119.99774 * 358.62942 * 18 16 14 20 20 Si 1.86793 * 120.00318 * 178.62150 * 18 16 14 21 21 H 1.48496 * 109.47430 * 270.00327 * 20 18 16 22 22 H 1.48497 * 109.47210 * 30.00567 * 20 18 16 23 23 H 1.48498 * 109.47184 * 150.00493 * 20 18 16 24 24 C 1.47027 * 125.64469 * 179.97438 * 11 9 7 25 25 H 1.08989 * 109.47387 * 299.26122 * 1 2 3 26 26 H 1.09006 * 109.46937 * 59.26677 * 1 2 3 27 27 H 1.08999 * 109.47000 * 179.25934 * 1 2 3 28 28 H 1.09006 * 109.47079 * 181.41501 * 3 2 1 29 29 H 1.08999 * 109.47210 * 301.41314 * 3 2 1 30 30 H 1.09000 * 109.47356 * 61.41781 * 3 2 1 31 31 H 1.08998 * 110.48747 * 98.42974 * 4 2 1 32 32 H 1.09003 * 110.60026 * 335.83538 * 4 2 1 33 33 H 1.09000 * 110.75669 * 279.63157 * 5 4 2 34 34 H 1.08997 * 110.91670 * 156.32735 * 5 4 2 35 35 H 1.08996 * 110.48965 * 203.38042 * 6 5 4 36 36 H 1.09005 * 110.59526 * 80.79102 * 6 5 4 37 37 H 1.09000 * 110.36409 * 322.92622 * 12 11 9 38 38 H 1.09001 * 110.36624 * 85.14648 * 12 11 9 39 39 H 1.09002 * 111.16188 * 205.12717 * 13 12 11 40 40 H 1.08998 * 110.93292 * 81.21910 * 13 12 11 41 41 H 0.96700 * 114.00067 * 290.46406 * 15 14 13 42 42 H 0.97001 * 119.99601 * 4.98019 * 19 18 16 43 43 H 1.08994 * 109.88242 * 59.56270 * 24 11 9 44 44 H 1.09000 * 109.88400 * 298.39482 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2369 5 6 3.3137 -1.5007 -0.7191 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6865 -0.0957 1.8332 9 6 0.9037 -1.2596 2.0612 10 8 0.3766 -2.3163 1.7847 11 7 0.4580 -0.5379 3.1085 12 6 1.0032 0.7576 3.5536 13 6 0.6209 0.8583 5.0536 14 6 -0.7836 0.1989 5.0594 15 8 -1.7874 1.1438 4.6832 16 6 -1.0899 -0.3913 6.4118 17 1 -1.2929 -1.4478 6.5064 18 6 -1.1108 0.4174 7.5283 19 7 -0.8368 1.6990 7.4172 20 14 -1.5283 -0.3070 9.1986 21 1 -2.9946 -0.2283 9.4199 22 1 -1.0963 -1.7270 9.2444 23 1 -0.8259 0.4585 10.2597 24 6 -0.6535 -0.9114 3.9956 25 1 -0.3633 0.5023 0.8964 26 1 -0.3633 0.5252 -0.8834 27 1 -0.3633 -1.0276 -0.0133 28 1 3.1443 1.4262 -0.0254 29 1 1.6761 1.9622 -0.8770 30 1 1.7174 1.9471 0.9024 31 1 2.3298 -0.0536 -2.0254 32 1 1.3152 -1.4660 -1.5988 33 1 4.1710 -0.8290 -0.6751 34 1 3.5357 -2.3678 -1.3412 35 1 3.7637 -2.1036 1.3310 36 1 2.2778 -2.8431 0.6594 37 1 2.0866 0.7739 3.4353 38 1 0.5486 1.5736 2.9918 39 1 0.5658 1.8979 5.3767 40 1 1.3195 0.2951 5.6722 41 1 -1.9436 1.8348 5.3414 42 1 -0.6912 2.0896 6.5413 43 1 -0.4378 -1.8642 4.4789 44 1 -1.5771 -0.9852 3.4216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = -103.844597 kcal Electronic energy + Delta-G solvation = -23926.839306 eV Core-core repulsion = 20650.094968 eV Total energy + Delta-G solvation = -3276.744338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52052 -38.44586 -36.98330 -34.68857 -32.31749 -32.24249 -30.22130 -29.17330 -28.13073 -27.33539 -25.08366 -24.32622 -22.72841 -21.01653 -20.01917 -19.52174 -18.01143 -17.85089 -16.80726 -15.96907 -15.47733 -15.00360 -14.63225 -14.40207 -13.97339 -13.90499 -13.52331 -13.23081 -13.05375 -12.84649 -12.58166 -12.38782 -11.89913 -11.80356 -11.73307 -11.60412 -11.37204 -11.18664 -11.09051 -10.86961 -10.74068 -10.64446 -10.61332 -10.57377 -10.51791 -10.41319 -10.20845 -9.36657 -9.25265 -8.67154 -8.24974 -8.08227 -6.59370 -4.42532 3.02302 3.33979 3.34941 3.47122 3.52564 4.33607 4.40963 4.53098 4.63870 4.95377 5.05474 5.22194 5.25818 5.28409 5.32185 5.37526 5.43463 5.54840 5.59497 5.65137 5.74333 5.76636 5.80590 5.85972 5.88462 5.95204 5.97593 6.07337 6.09288 6.21740 6.27062 6.32918 6.36496 6.44389 6.53911 6.69800 6.79916 6.94906 7.05379 7.74865 8.04327 8.16727 8.53603 8.61558 8.91043 9.29135 10.70941 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.004540 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.471299 B = 6166.379504 C = 6384.371890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.104 4.104 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.554 6.554 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.149 4.149 14 C 0.228 3.772 15 O -0.586 6.586 16 C -0.613 4.613 17 H 0.060 0.940 18 C 0.031 3.969 19 N -0.907 5.907 20 Si 1.074 2.926 21 H -0.285 1.285 22 H -0.287 1.287 23 H -0.282 1.282 24 C 0.130 3.870 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.371 0.629 42 H 0.269 0.731 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 -0.102 -12.766 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.125 4.125 8 H 0.107 0.893 9 C 0.325 3.675 10 O -0.433 6.433 11 N -0.341 5.341 12 C -0.023 4.023 13 C -0.188 4.188 14 C 0.188 3.812 15 O -0.394 6.394 16 C -0.651 4.651 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.901 3.099 21 H -0.211 1.211 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.008 3.992 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.220 0.780 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.726 -0.711 -11.908 14.213 hybrid contribution 0.161 0.138 -0.985 1.007 sum 7.887 -0.573 -12.893 15.125 Atomic orbital electron populations 1.22120 0.94028 1.03006 1.01959 1.20999 0.95907 0.94961 0.93241 1.21947 1.00747 0.94856 1.02116 1.22475 0.97364 0.98766 0.96443 1.22452 0.97529 0.99764 0.96109 1.22364 0.98925 0.97993 0.95852 1.22085 0.95561 0.98578 0.96313 0.89315 1.19988 0.84442 0.83701 0.79331 1.90631 1.59693 1.23285 1.69715 1.48645 1.34516 1.21826 1.29131 1.22453 0.97348 0.85164 0.97338 1.23569 1.00756 1.02227 0.92199 1.19746 0.84007 0.85411 0.92022 1.86279 1.60569 1.43387 1.49140 1.22373 1.53324 0.97310 0.92116 0.92211 1.25934 0.92597 0.94904 1.03904 1.70963 1.43970 1.12223 1.27543 0.83454 0.76864 0.75043 0.74493 1.21142 1.21280 1.20769 1.21925 0.88228 0.98409 0.90589 0.92096 0.92662 0.91416 0.92472 0.92419 0.92322 0.91557 0.91255 0.91622 0.91460 0.91613 0.89659 0.91952 0.91938 0.90242 0.90704 0.77977 0.91718 0.90881 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.21 37.16 0.27 -1.96 16 2 C -0.05 -0.63 0.94 -153.39 -0.14 -0.77 16 3 C -0.14 -1.48 8.15 37.15 0.30 -1.17 16 4 C -0.11 -1.22 5.90 -25.07 -0.15 -1.36 16 5 C -0.12 -1.23 6.91 -24.73 -0.17 -1.40 16 6 C -0.11 -1.45 6.32 -25.07 -0.16 -1.60 16 7 C -0.10 -1.47 2.59 -90.65 -0.23 -1.71 16 8 H 0.09 1.17 5.96 -51.93 -0.31 0.86 16 9 C 0.54 9.93 4.74 -10.99 -0.05 9.88 16 10 O -0.55 -11.90 15.12 5.56 0.08 -11.82 16 11 N -0.61 -11.92 3.00 -170.38 -0.51 -12.43 16 12 C 0.10 1.78 6.65 -2.41 -0.02 1.76 16 13 C -0.15 -3.15 5.33 -24.47 -0.13 -3.28 16 14 C 0.23 5.45 0.81 -89.94 -0.07 5.38 16 15 O -0.59 -14.32 13.08 -35.23 -0.46 -14.78 16 16 C -0.61 -16.19 8.21 -34.44 -0.28 -16.48 16 17 H 0.06 1.61 7.59 -52.48 -0.40 1.21 16 18 C 0.03 0.82 5.21 -17.82 -0.09 0.72 16 19 N -0.91 -24.24 12.93 55.43 0.72 -23.52 16 20 Si 1.07 23.61 29.90 -169.99 -5.08 18.53 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.13 2.96 6.22 -3.06 -0.02 2.94 16 25 H 0.06 1.00 7.29 -51.94 -0.38 0.62 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.12 6.78 -51.93 -0.35 0.77 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 32 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 37 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.71 6.39 -51.93 -0.33 1.37 16 40 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 41 H 0.37 8.94 6.70 45.56 0.31 9.25 16 42 H 0.27 6.91 3.76 -40.82 -0.15 6.75 16 43 H 0.07 1.72 7.67 -51.93 -0.40 1.32 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -28.95 333.23 -7.74 -36.69 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.55 Total: 11.36 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.95 Total: -9.05 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.21 Total: -35.95 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.38 Total: -26.60 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.08 Total: 18.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.95 -7.74 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.159 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds