Wall clock time and date at job start Tue Mar 31 2020 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.05330 * 2 1 4 4 C 1.54265 * 110.03302 * 238.58386 * 2 1 3 5 5 C 1.54891 * 104.19649 * 217.10501 * 4 2 1 6 6 C 1.54894 * 102.74771 * 37.93907 * 5 4 2 7 7 C 1.53877 * 110.03187 * 121.41408 * 2 1 3 8 8 H 1.09001 * 110.07359 * 238.59480 * 7 2 1 9 9 C 1.50700 * 110.03115 * 0.02562 * 7 2 1 10 10 O 1.21282 * 120.00547 * 84.61827 * 9 7 2 11 11 N 1.34777 * 119.99617 * 264.61974 * 9 7 2 12 12 C 1.47426 * 125.64935 * 0.04425 * 11 9 7 13 13 C 1.55128 * 104.93959 * 203.96542 * 12 11 9 14 14 C 1.55152 * 101.48652 * 323.22270 * 13 12 11 15 15 O 1.42901 * 110.72096 * 276.83003 * 14 13 12 16 16 C 1.50699 * 110.72104 * 153.73682 * 14 13 12 17 17 H 1.08003 * 119.99809 * 239.64647 * 16 14 13 18 18 C 1.37876 * 120.00359 * 59.63392 * 16 14 13 19 19 N 1.31523 * 119.99774 * 358.62942 * 18 16 14 20 20 Si 1.86793 * 120.00318 * 178.62150 * 18 16 14 21 21 H 1.48496 * 109.47430 * 270.00327 * 20 18 16 22 22 H 1.48497 * 109.47210 * 30.00567 * 20 18 16 23 23 H 1.48498 * 109.47184 * 150.00493 * 20 18 16 24 24 C 1.47027 * 125.64469 * 179.97438 * 11 9 7 25 25 H 1.08989 * 109.47387 * 299.26122 * 1 2 3 26 26 H 1.09006 * 109.46937 * 59.26677 * 1 2 3 27 27 H 1.08999 * 109.47000 * 179.25934 * 1 2 3 28 28 H 1.09006 * 109.47079 * 181.41501 * 3 2 1 29 29 H 1.08999 * 109.47210 * 301.41314 * 3 2 1 30 30 H 1.09000 * 109.47356 * 61.41781 * 3 2 1 31 31 H 1.08998 * 110.48747 * 98.42974 * 4 2 1 32 32 H 1.09003 * 110.60026 * 335.83538 * 4 2 1 33 33 H 1.09000 * 110.75669 * 279.63157 * 5 4 2 34 34 H 1.08997 * 110.91670 * 156.32735 * 5 4 2 35 35 H 1.08996 * 110.48965 * 203.38042 * 6 5 4 36 36 H 1.09005 * 110.59526 * 80.79102 * 6 5 4 37 37 H 1.09000 * 110.36409 * 322.92622 * 12 11 9 38 38 H 1.09001 * 110.36624 * 85.14648 * 12 11 9 39 39 H 1.09002 * 111.16188 * 205.12717 * 13 12 11 40 40 H 1.08998 * 110.93292 * 81.21910 * 13 12 11 41 41 H 0.96700 * 114.00067 * 290.46406 * 15 14 13 42 42 H 0.97001 * 119.99601 * 4.98019 * 19 18 16 43 43 H 1.08994 * 109.88242 * 59.56270 * 24 11 9 44 44 H 1.09000 * 109.88400 * 298.39482 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2369 5 6 3.3137 -1.5007 -0.7191 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6865 -0.0957 1.8332 9 6 0.9037 -1.2596 2.0612 10 8 0.3766 -2.3163 1.7847 11 7 0.4580 -0.5379 3.1085 12 6 1.0032 0.7576 3.5536 13 6 0.6209 0.8583 5.0536 14 6 -0.7836 0.1989 5.0594 15 8 -1.7874 1.1438 4.6832 16 6 -1.0899 -0.3913 6.4118 17 1 -1.2929 -1.4478 6.5064 18 6 -1.1108 0.4174 7.5283 19 7 -0.8368 1.6990 7.4172 20 14 -1.5283 -0.3070 9.1986 21 1 -2.9946 -0.2283 9.4199 22 1 -1.0963 -1.7270 9.2444 23 1 -0.8259 0.4585 10.2597 24 6 -0.6535 -0.9114 3.9956 25 1 -0.3633 0.5023 0.8964 26 1 -0.3633 0.5252 -0.8834 27 1 -0.3633 -1.0276 -0.0133 28 1 3.1443 1.4262 -0.0254 29 1 1.6761 1.9622 -0.8770 30 1 1.7174 1.9471 0.9024 31 1 2.3298 -0.0536 -2.0254 32 1 1.3152 -1.4660 -1.5988 33 1 4.1710 -0.8290 -0.6751 34 1 3.5357 -2.3678 -1.3412 35 1 3.7637 -2.1036 1.3310 36 1 2.2778 -2.8431 0.6594 37 1 2.0866 0.7739 3.4353 38 1 0.5486 1.5736 2.9918 39 1 0.5658 1.8979 5.3767 40 1 1.3195 0.2951 5.6722 41 1 -1.9436 1.8348 5.3414 42 1 -0.6912 2.0896 6.5413 43 1 -0.4378 -1.8642 4.4789 44 1 -1.5771 -0.9852 3.4216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:01 Heat of formation + Delta-G solvation = -121.783109 kcal Electronic energy + Delta-G solvation = -23927.617178 eV Core-core repulsion = 20650.094968 eV Total energy + Delta-G solvation = -3277.522211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86916 -39.99649 -38.44604 -36.46526 -34.33098 -33.20090 -31.78373 -30.66533 -29.65324 -28.30084 -26.73953 -25.63541 -24.27856 -22.23192 -21.52980 -20.91370 -19.96733 -19.17832 -18.22959 -17.50296 -16.76572 -16.51354 -16.17473 -15.79024 -15.66108 -15.32638 -14.90498 -14.59381 -14.31147 -14.23023 -13.88706 -13.74914 -13.58185 -13.46270 -13.04377 -12.93951 -12.76000 -12.61968 -12.52321 -12.41233 -12.24938 -11.95704 -11.94775 -11.77070 -11.57195 -11.43897 -11.38949 -11.23341 -10.82103 -10.63760 -10.19051 -9.72205 -8.67271 -6.52549 1.54847 1.56311 1.59304 1.79682 1.94579 2.49914 2.97014 3.33174 3.48352 3.56448 3.60716 3.77762 3.89353 4.07765 4.20050 4.24333 4.34262 4.36634 4.38528 4.39873 4.44288 4.58093 4.68190 4.70704 4.73440 4.83079 4.92125 4.97795 5.00184 5.02476 5.09342 5.12937 5.15349 5.20279 5.23945 5.28394 5.33348 5.42294 5.52341 5.77760 6.02629 6.46923 6.54679 6.95421 7.10069 7.24779 8.64957 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.004540 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.471299 B = 6166.379504 C = 6384.371890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.136 4.136 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.100 4.100 8 H 0.107 0.893 9 C 0.532 3.468 10 O -0.591 6.591 11 N -0.612 5.612 12 C 0.110 3.890 13 C -0.139 4.139 14 C 0.217 3.783 15 O -0.591 6.591 16 C -0.638 4.638 17 H 0.043 0.957 18 C -0.002 4.002 19 N -0.919 5.919 20 Si 1.115 2.885 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.137 3.863 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.371 0.629 42 H 0.268 0.732 43 H 0.054 0.946 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.388 1.113 -13.969 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.050 4.050 3 C -0.193 4.193 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.121 4.121 8 H 0.125 0.875 9 C 0.324 3.676 10 O -0.472 6.472 11 N -0.344 5.344 12 C -0.012 4.012 13 C -0.178 4.178 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.676 4.676 17 H 0.061 0.939 18 C -0.204 4.204 19 N -0.559 5.559 20 Si 0.937 3.063 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.202 1.202 24 C 0.014 3.986 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.220 0.780 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.000 0.519 -13.138 16.519 hybrid contribution -0.617 -0.286 -0.637 0.932 sum 9.383 0.233 -13.775 16.669 Atomic orbital electron populations 1.22065 0.96078 1.00890 1.01653 1.21080 0.94141 0.96609 0.93171 1.21937 1.02077 0.92866 1.02445 1.22481 0.97292 0.98902 0.96201 1.22450 0.97802 1.00586 0.93979 1.22402 0.98656 0.96212 0.98187 1.22239 0.93777 0.99634 0.96443 0.87471 1.20947 0.84991 0.82936 0.78767 1.90611 1.61108 1.25043 1.70466 1.48728 1.33786 1.22696 1.29214 1.22482 0.99607 0.84440 0.94678 1.23352 0.98502 1.01355 0.94619 1.19838 0.85299 0.85810 0.91285 1.86261 1.61148 1.43425 1.49074 1.22616 1.54251 0.96805 0.93893 0.93893 1.27042 0.91852 0.94800 1.06679 1.71020 1.44532 1.12558 1.27741 0.82921 0.77194 0.74826 0.71343 1.20172 1.20569 1.20151 1.21604 0.88845 0.97487 0.90685 0.94523 0.90691 0.94480 0.90304 0.91071 0.93091 0.88964 0.92719 0.89173 0.90342 0.90228 0.92578 0.88129 0.90862 0.90441 0.91941 0.78021 0.91813 0.92732 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 7.21 71.98 0.52 -3.73 16 2 C -0.05 -1.11 0.94 -51.46 -0.05 -1.16 16 3 C -0.14 -2.32 8.15 71.98 0.59 -1.74 16 4 C -0.11 -2.05 5.90 31.67 0.19 -1.86 16 5 C -0.11 -1.84 6.91 31.89 0.22 -1.62 16 6 C -0.12 -2.74 6.32 31.67 0.20 -2.54 16 7 C -0.10 -2.63 2.59 -10.81 -0.03 -2.65 16 8 H 0.11 2.42 5.96 -2.39 -0.01 2.41 16 9 C 0.53 19.81 4.74 87.66 0.42 20.23 16 10 O -0.59 -26.41 15.12 -3.04 -0.05 -26.45 16 11 N -0.61 -24.15 3.00 -811.34 -2.44 -26.58 16 12 C 0.11 3.75 6.65 86.93 0.58 4.33 16 13 C -0.14 -5.89 5.33 32.06 0.17 -5.72 16 14 C 0.22 10.65 0.81 -10.35 -0.01 10.64 16 15 O -0.59 -29.54 13.08 -148.98 -1.95 -31.49 16 16 C -0.64 -34.59 8.21 25.60 0.21 -34.38 16 17 H 0.04 2.40 7.59 -2.91 -0.02 2.38 16 18 C 0.00 -0.13 5.21 84.65 0.44 0.31 16 19 N -0.92 -49.05 12.93 21.45 0.28 -48.78 16 20 Si 1.11 47.54 29.90 68.60 2.05 49.60 16 21 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.14 6.50 6.22 86.73 0.54 7.04 16 25 H 0.04 1.19 7.29 -2.39 -0.02 1.18 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.04 1.26 6.78 -2.39 -0.02 1.24 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 32 H 0.05 1.17 7.85 -2.39 -0.02 1.15 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.66 6.91 -2.38 -0.02 1.64 16 37 H 0.10 2.70 6.73 -2.39 -0.02 2.68 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 3.29 6.39 -2.39 -0.02 3.28 16 40 H 0.06 2.77 8.04 -2.39 -0.02 2.75 16 41 H 0.37 18.23 6.70 -74.06 -0.50 17.73 16 42 H 0.27 13.85 3.76 -92.71 -0.35 13.50 16 43 H 0.05 2.73 7.67 -2.39 -0.02 2.72 16 44 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 Total: -1.00 -64.75 333.23 2.79 -61.96 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.91 Total: 34.59 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 3.98 Total: -12.84 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.16 Total: -75.36 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -2.00 Total: -57.95 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.05 Total: 49.60 kcal Total: -64.75 2.79 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.826 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds