Wall clock time and date at job start Tue Mar 31 2020 08:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 C 1.53003 * 109.46954 * 120.00319 * 2 1 3 5 5 C 1.52996 * 109.47202 * 64.99810 * 4 2 1 6 6 H 1.09002 * 115.54951 * 29.41896 * 5 4 2 7 7 C 1.53000 * 117.50107 * 243.74684 * 5 4 2 8 8 C 1.53002 * 117.49888 * 175.08922 * 5 4 2 9 9 H 1.08999 * 117.49664 * 0.02562 * 8 5 4 10 10 C 1.50695 * 117.50044 * 215.00904 * 8 5 4 11 11 O 1.21285 * 120.00075 * 359.97438 * 10 8 5 12 12 N 1.34778 * 120.00347 * 180.02562 * 10 8 5 13 13 C 1.47027 * 125.64630 * 0.02562 * 12 10 8 14 14 C 1.54316 * 107.26918 * 181.02530 * 13 12 10 15 15 C 1.55156 * 102.94612 * 22.19477 * 14 13 12 16 16 O 1.42898 * 111.00670 * 82.56860 * 15 14 13 17 17 C 1.50693 * 111.00460 * 206.38602 * 15 14 13 18 18 H 1.08001 * 120.00217 * 118.54811 * 17 15 14 19 19 C 1.37883 * 120.00074 * 298.54013 * 17 15 14 20 20 N 1.31513 * 119.99700 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00142 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46763 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46974 * 120.00114 * 21 19 17 24 24 H 1.48504 * 109.47192 * 240.00280 * 21 19 17 25 25 C 1.47417 * 125.65124 * 179.71201 * 12 10 8 26 26 H 1.08997 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47398 * 300.00207 * 1 2 3 28 28 H 1.09002 * 109.46627 * 60.00335 * 1 2 3 29 29 H 1.09003 * 109.47182 * 239.99855 * 2 1 3 30 30 H 1.09000 * 109.47325 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47317 * 300.00125 * 3 2 1 32 32 H 1.09003 * 109.47221 * 59.99879 * 3 2 1 33 33 H 1.09004 * 109.46862 * 304.99957 * 4 2 1 34 34 H 1.09000 * 109.47112 * 185.00023 * 4 2 1 35 35 H 1.09008 * 117.49673 * 359.97438 * 7 5 4 36 36 H 1.08999 * 117.49942 * 144.97366 * 7 5 4 37 37 H 1.08997 * 109.87927 * 300.44461 * 13 12 10 38 38 H 1.08999 * 109.88061 * 61.45244 * 13 12 10 39 39 H 1.09008 * 110.71851 * 140.55836 * 14 13 12 40 40 H 1.08998 * 110.72232 * 263.82691 * 14 13 12 41 41 H 0.96704 * 113.99979 * 61.45754 * 16 15 14 42 42 H 0.96998 * 119.99529 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.36738 * 274.74506 * 25 12 10 44 44 H 1.09006 * 110.36984 * 37.06525 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 1.5406 -2.6158 0.1866 7 6 0.6767 -2.7103 2.2636 8 6 2.1521 -3.1167 2.2948 9 1 2.7802 -2.6723 3.0669 10 6 2.4916 -4.5355 1.9173 11 8 2.3509 -4.9085 0.7719 12 7 2.9506 -5.3904 2.8528 13 6 3.1660 -5.0726 4.2720 14 6 3.7205 -6.3446 4.9472 15 6 4.3195 -7.1377 3.7558 16 8 5.6316 -6.6701 3.4371 17 6 4.3312 -8.6169 4.0430 18 1 3.7698 -9.2933 3.4155 19 6 5.0589 -9.1069 5.1067 20 7 5.7422 -8.2832 5.8710 21 14 5.0741 -10.9408 5.4623 22 1 4.2320 -11.6457 4.4627 23 1 6.4671 -11.4490 5.3819 24 1 4.5357 -11.1853 6.8245 25 6 3.3136 -6.8007 2.6238 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 0.3348 -1.9987 3.0153 36 1 -0.0488 -3.4689 1.9699 37 1 3.8862 -4.2597 4.3646 38 1 2.2219 -4.7858 4.7351 39 1 4.4958 -6.0907 5.6702 40 1 2.9187 -6.9097 5.4225 41 1 6.2707 -6.7718 4.1557 42 1 6.2538 -8.6279 6.6195 43 1 2.4309 -7.4362 2.6958 44 1 3.7873 -6.9171 1.6490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:55 Heat of formation + Delta-G solvation = -83.633965 kcal Electronic energy + Delta-G solvation = -22455.665205 eV Core-core repulsion = 19179.797266 eV Total energy + Delta-G solvation = -3275.867940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80196 -38.08866 -36.88137 -34.90322 -34.25608 -32.23501 -29.83781 -28.44188 -27.63402 -27.30871 -25.50998 -23.50112 -21.91991 -21.07938 -20.13589 -19.66649 -18.53262 -17.20878 -16.83658 -15.42594 -15.21470 -15.00563 -14.95928 -14.66751 -14.16754 -13.98875 -13.55206 -13.36933 -12.99640 -12.75623 -12.41166 -12.28182 -12.04232 -11.91512 -11.67131 -11.57431 -11.36647 -11.29557 -11.26356 -11.02240 -10.90687 -10.77924 -10.61662 -10.46183 -10.14318 -10.03183 -9.93075 -9.43148 -9.28195 -8.69842 -8.22681 -7.96207 -6.29790 -4.37597 2.90389 3.17924 3.27091 3.31540 3.51185 3.96251 4.25912 4.51509 4.70949 4.77023 4.92935 4.94753 4.99228 5.07734 5.30001 5.39994 5.48472 5.54944 5.56563 5.57019 5.64820 5.69568 5.74692 5.76400 5.85308 5.90305 5.98156 6.03778 6.07572 6.15231 6.20392 6.30812 6.36871 6.43887 6.66297 6.89750 6.98222 7.28931 7.33582 7.72207 8.01201 8.17406 8.64494 8.69906 9.29610 9.38491 10.77654 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044801 B = 0.003185 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.833366 B = 8788.580397 C = 8905.816928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.117 4.117 6 H 0.116 0.884 7 C -0.150 4.150 8 C -0.181 4.181 9 H 0.119 0.881 10 C 0.551 3.449 11 O -0.558 6.558 12 N -0.603 5.603 13 C 0.101 3.899 14 C -0.136 4.136 15 C 0.247 3.753 16 O -0.582 6.582 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.120 3.880 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.380 0.620 42 H 0.267 0.733 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 15.131 -3.360 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.135 4.135 6 H 0.134 0.866 7 C -0.187 4.187 8 C -0.202 4.202 9 H 0.137 0.863 10 C 0.340 3.660 11 O -0.437 6.437 12 N -0.334 5.334 13 C -0.022 4.022 14 C -0.175 4.175 15 C 0.207 3.793 16 O -0.391 6.391 17 C -0.572 4.572 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.002 4.002 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.210 15.121 -4.421 17.765 hybrid contribution 0.406 -1.156 1.107 1.651 sum -7.804 13.965 -3.314 16.337 Atomic orbital electron populations 1.21845 0.95180 1.02112 1.01218 1.21109 0.96039 0.95834 0.98379 1.21845 1.00997 0.96090 1.01560 1.21282 1.00904 0.92069 0.97969 1.22387 1.01680 0.93875 0.95591 0.86600 1.23062 0.90853 1.03064 1.01724 1.22290 0.99491 0.94173 1.04287 0.86288 1.19203 0.77083 0.85513 0.84240 1.90641 1.55214 1.78383 1.19500 1.48518 1.63013 1.12487 1.09419 1.22170 0.99080 1.00059 0.80904 1.23179 1.00900 0.93476 0.99946 1.19657 0.80391 0.91792 0.87476 1.86143 1.21573 1.86214 1.45127 1.21483 1.30630 0.91949 1.13163 0.91686 1.24994 0.94294 0.98634 0.95116 1.69727 1.30954 1.34720 1.18035 0.86365 0.78031 0.84458 0.78139 1.19579 1.20776 1.20839 1.22418 0.97624 0.79447 1.00683 0.92172 0.92907 0.93153 0.91021 0.92702 0.92820 0.92809 0.91674 0.91381 0.88147 0.88537 0.92538 0.92828 0.89522 0.91364 0.77009 0.92303 0.91071 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.01 37.16 0.33 -0.88 16 2 C -0.10 -0.85 2.88 -90.62 -0.26 -1.11 16 3 C -0.15 -1.13 9.19 37.15 0.34 -0.79 16 4 C -0.08 -0.84 4.96 -26.73 -0.13 -0.97 16 5 C -0.12 -1.45 4.23 -90.62 -0.38 -1.83 16 6 H 0.12 1.65 7.60 -51.93 -0.39 1.26 16 7 C -0.15 -1.77 9.88 -26.70 -0.26 -2.03 16 8 C -0.18 -2.64 5.26 -91.74 -0.48 -3.12 16 9 H 0.12 1.58 7.67 -51.93 -0.40 1.18 16 10 C 0.55 10.75 7.63 -10.99 -0.08 10.66 16 11 O -0.56 -12.60 16.51 5.55 0.09 -12.50 16 12 N -0.60 -12.24 3.32 -170.38 -0.57 -12.80 16 13 C 0.10 1.84 6.31 -3.07 -0.02 1.82 16 14 C -0.14 -2.92 5.38 -24.90 -0.13 -3.05 16 15 C 0.25 5.98 0.87 -89.50 -0.08 5.90 16 16 O -0.58 -14.85 13.17 -35.23 -0.46 -15.32 16 17 C -0.53 -13.89 8.27 -34.44 -0.28 -14.17 16 18 H 0.06 1.70 7.79 -52.49 -0.41 1.29 16 19 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 20 N -0.90 -22.84 10.76 55.43 0.60 -22.24 16 21 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.12 2.73 6.10 -2.41 -0.01 2.72 16 26 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.96 8.03 -51.92 -0.42 0.54 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.93 7.55 -51.92 -0.39 1.54 16 40 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 41 H 0.38 9.61 7.57 45.56 0.34 9.95 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 43 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 44 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -28.37 355.02 -8.63 -37.01 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.06 Total: 10.53 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.56 Total: -5.11 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.03 Total: -35.04 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.37 Total: -27.82 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.37 -8.63 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.628 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds